Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

80321301 .. 80321699

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATATGGAGGCAATTCATGATCAAGAAGTAATCCCAACTCTTGAATTTTCTAGCGAGTTTTTAGTCTCAAAGCAAGGGAGTGAGGAATGGAAAGCTATGAGGAACAAAGTGAGAGAGGCATGTCAGAGTTATGGTTGCTTTCTGCTGTTGGTGCGGGAAGAGACAATCCCCATCAACTTAAGTGAAGAAATGGTGATGGCCATGAAGGGTTTGTTCGATCTCCCTGAAGAGACCAAGCAGAAGCACAAAAGTACGAACTCTTTCCGTGACTACCAAGGCAAATCCCCCAACTTTCCATTGAGCGAAAGCTTTGGAATTGATAGTTCAGACCAGATTGATGCAGCTCAAGCCTTCACCAACCTCGTGTGGCCTCAAGGGAACCCTGCGTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

132

Amino Acids

15.1

Weight (kDa)

4.63

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	12 - 125	1.6e-13	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	3 cut(s)	98, 312, 347
AluI	AGCT	3 cut(s)	98, 312, 347
Alw26I	GTCTC	3 cut(s)	73, 158, 227
AoxI	GGCC	2 cut(s)	201, 371
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	208, 349
BalI	TGGCCA	1 cut(s)	203
BauI	CACGAG	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	182, 193
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	73, 158, 227
BfaI	CTAG	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	181
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	383
BmsI	GCATC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	333, 360
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	356
BshFI	GGCC	2 cut(s)	203, 373
BsmAI	GTCTC	3 cut(s)	73, 158, 227
BsnI	GGCC	2 cut(s)	203, 373
Bso31I	GGTCTC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	22, 220
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	203, 373
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	22, 220
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	365
Bst6I	CTCTTC	2 cut(s)	156, 225
BstAFI	CTTAAG	1 cut(s)	181
BstKTI	GATC	2 cut(s)	25, 223
BstMAI	GTCTC	3 cut(s)	73, 158, 227
BstMBI	GATC	2 cut(s)	22, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 350
BstNSI	RCATGY	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	203, 373
CciI	TCATGA	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	3 cut(s)	20, 123, 205
CviJI	RGCY	6 cut(s)	98, 203, 312, 347, 353, 373
CviKI_1	RGCY	6 cut(s)	98, 203, 312, 347, 353, 373
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	2 cut(s)	24, 222
DpnII	GATC	2 cut(s)	22, 220
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	156, 225
EarI	CTCTTC	2 cut(s)	156, 225
Eco130I	CCWWGG	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	3 cut(s)	23, 126, 208
FaiI	YATR	6 cut(s)	8, 21, 101, 124, 135, 206
FatI	CATG	3 cut(s)	19, 122, 204
FauI	CCCGC	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	203, 373
Hin1II	CATG	3 cut(s)	23, 126, 208
HindIII	AAGCTT	1 cut(s)	310
HphI	GGTGA	2 cut(s)	208, 349
Hpy188I	TCNGA	2 cut(s)	129, 331
Hpy188III	TCNNGA	3 cut(s)	20, 26, 44
HpyAV	CCTTC	2 cut(s)	202, 364
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 350
Hsp92II	CATG	3 cut(s)	23, 126, 208
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	22, 220
LpnPI	CCDG	2 cut(s)	240, 347
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	2 cut(s)	24, 222
MboI	GATC	2 cut(s)	22, 220
MboII	GAAGA	3 cut(s)	173, 200, 242
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	3 cut(s)	15, 47, 318
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	6 cut(s)	4, 79, 96, 112, 374, 384
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	203
MspCI	CTTAAG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	154, 350
NdeII	GATC	2 cut(s)	22, 220
NlaIII	CATG	3 cut(s)	23, 126, 208
NlaIV	GGNNCC	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	126
PagI	TCATGA	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	383
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	22, 220
SetI	ASST	4 cut(s)	100, 314, 349, 366
SfaNI	GCATC	1 cut(s)	331
SmlI	CTYRAG	3 cut(s)	181, 348, 375
SmoI	CTYRAG	3 cut(s)	181, 348, 375
Sse9I	AATT	3 cut(s)	15, 47, 318
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	277
TaqI	TCGA	1 cut(s)	219
TasI	AATT	3 cut(s)	15, 47, 318
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	8, 221
TspGWI	ACGGA	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.