MD11G1216200.v1.1

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013358
Physical Location & Seq
Reverse (-)
31574371 .. 31574781
411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1216200.v1.1.491

Sequence Viewer

Length: 411 bp
ATGTGTCCTCGCTCATGTTCTGTAATTTATTTTCTTTCTTGTTTCAAATTTTGGGTGCATACTGTAGCTTATTTAATGGTCACATCTTGGGCGGCAGTGGTGGAGATATTGTCTTTAGCTTACAAAGGGGACAAGACAGTCTCATGGAGTGAAGCCTGCACTTCTTTTGGGAAGTTCTGCTGCAGAATGAAGGTGGCATTGGTTATCCATGCCCTGGCTCTTTGTTGCTTTCTTGTCTTGGCTGTGCTCTCAGCTTATAGGGTGTTTTCAGCATGTTTGAGCCACCTTCTGTATCTGATAAGGAGGTGGAAGAAGAGAGGACTTAGATTCGAATGGTTTCTAGAGGTCTCTTGTGGTAGACATATGATTCGGCTTGAAATTAAACACACACACACACACACATATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

137

Amino Acids

15.82

Weight (kDa)

9.4

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 21 - 76 3.2e-10 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54980
fragaria_vesca FvH4_3g22910
malus_domestica MD03G1199400.v1.1 MD11G1216200.v1.1 MD11G1216300.v1.1
prunus_persica Prupe.4G215200_v2.0.a1
pyrus_communis pycom03g15100
rosa_chinensis RchiOBHm_Chr5g0040241
rosa_laevigata RLG00000033966
rosa_multiflora Rmu_sc0002908.1_g000012 Rmu_sc0010162.1_g000006
rosa_roxburghii Rroxscaffold_1G00041070
rosa_rugosa Rorug05G0184200
rosa_samantha Rh5AG271100 Rh5BG274400 Rh5CG307300 Rh5DG282600
rosa_wichuraiana Rw5G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 358
AciI CCGC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 46, 377
AjnI CCWGG 1 cut(s) 213
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 3 cut(s) 68, 119, 254
AluI AGCT 3 cut(s) 68, 119, 254
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 2 cut(s) 145, 352
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
Asp700I GAANNNNTTC 1 cut(s) 336
AsuII TTCGAA 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 145, 352
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 2 cut(s) 63, 181
BisI GCNGC 2 cut(s) 93, 181
BlsI GCNGC 2 cut(s) 94, 182
Bme1390I CCNGG 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 145, 352
BsmFI GGGAC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 249
BspACI CCGC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 64, 139
Bst6I CTCTTC 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 250, 323
BstMAI GTCTC 2 cut(s) 145, 352
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 2 cut(s) 63, 181
BstV1I GCAGC 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 157
CviAII CATG 4 cut(s) 15, 144, 209, 273
CviJI RGCY 8 cut(s) 68, 119, 155, 218, 242, 254, 282, 373
CviKI_1 RGCY 8 cut(s) 68, 119, 155, 218, 242, 254, 282, 373
DdeI CTNAG 2 cut(s) 250, 323
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 213
FaeI CATG 4 cut(s) 18, 147, 212, 276
FaqI GGGAC 1 cut(s) 143
FatI CATG 4 cut(s) 14, 143, 208, 272
FauNDI CATATG 1 cut(s) 363
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 93, 181
Fsp4HI GCNGC 2 cut(s) 93, 181
FspBI CTAG 1 cut(s) 341
GluI GCNGC 2 cut(s) 93, 181
Hin1II CATG 4 cut(s) 18, 147, 212, 276
HinfI GANTC 2 cut(s) 327, 367
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 184, 296
HpyCH4III ACNGT 2 cut(s) 64, 139
HpyCH4V TGCA 3 cut(s) 58, 159, 183
HpyF3I CTNAG 2 cut(s) 250, 323
Hsp92II CATG 4 cut(s) 18, 147, 212, 276
LpnPI CCDG 3 cut(s) 169, 200, 227
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 2 cut(s) 322, 325
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 3 cut(s) 24, 47, 378
MnlI CCTC 4 cut(s) 18, 297, 311, 337
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 2 cut(s) 74, 381
MslI CAYNNNNRTG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
NdeI CATATG 1 cut(s) 363
NlaIII CATG 4 cut(s) 18, 147, 212, 276
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 276
NspV TTCGAA 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 2 cut(s) 327, 367
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 2 cut(s) 94, 182
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PstI CTGCAG 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 2 cut(s) 74, 381
SatI GCNGC 2 cut(s) 93, 181
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 249
SetI ASST 7 cut(s) 70, 121, 195, 256, 288, 308, 348
SfcI CTRYAG 2 cut(s) 63, 181
SfuI TTCGAA 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 406
Sse9I AATT 3 cut(s) 24, 47, 378
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 64, 139
TaqI TCGA 1 cut(s) 330
TasI AATT 3 cut(s) 24, 47, 378
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 327, 367
Tru1I TTAA 2 cut(s) 74, 381
Tru9I TTAA 2 cut(s) 74, 381
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 1 cut(s) 102
Van91I CCANNNNNTGG 1 cut(s) 214
XapI RAATTY 1 cut(s) 47
XbaI TCTAGA 1 cut(s) 340
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.