Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002908.1

Orthogroup ID

OG0013358

Physical Location & Seq

Genomic Coordinates Reverse (-)

45794 .. 46978

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002908.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgagaggaaactcggatgacaatgctccaaatgtccctcttctgaagctcctagattgctctcttagggtttctgtgattcctcttagtattgcaactatatggttgactgtgaccaaccaccaagacaacactggctatgggaagctggacttcggcaacttcatgggcctcaagtacatggtttgcatcagcaccatttctgctgtatatgcttttgttgctgctgtgtcctcatggatcagatgcttagtctctaaagcttggcttttctttgtccctgaccagatactagcctacctaatggtcacatctgtggctgcagtgatggagatggtgtttttagcttataaaggtgacagggcagtctcatggagtgaagcttgtgcttcatatggacaattctgcagtagaatgaagttggccttggttctccactctctggccctttgtagcttccttgttttagctgtgatttctgcttatagggtcttcagcatgtatgaggcaccttctgtttctcataaagaggtggagttagaagagaacactacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

185

Amino Acids

20.46

Weight (kDa)

6.27

Isoelectric Point (pI)

20.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54980
fragaria_vesca	FvH4_3g22910
malus_domestica	MD03G1199400.v1.1 MD11G1216200.v1.1 MD11G1216300.v1.1
prunus_persica	Prupe.4G215200_v2.0.a1
pyrus_communis	pycom03g15100
rosa_chinensis	RchiOBHm_Chr5g0040241
rosa_laevigata	RLG00000033966
rosa_multiflora	Rmu_sc0002908.1_g000012 Rmu_sc0010162.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041070
rosa_rugosa	Rorug05G0184200
rosa_samantha	Rh5AG271100 Rh5BG274400 Rh5CG307300 Rh5DG282600
rosa_wichuraiana	Rw5G025350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AasI	GACNNNNNNGTC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	508
AccB7I	CCANNNNNTGG	1 cut(s)	442
AclWI	GGATC	1 cut(s)	248
AcuI	CTGAAG	2 cut(s)	65, 478
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	7 cut(s)	49, 148, 263, 347, 383, 456, 470
AluI	AGCT	7 cut(s)	49, 148, 263, 347, 383, 456, 470
Alw26I	GTCTC	2 cut(s)	259, 373
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	3 cut(s)	169, 423, 444
ApeKI	GCWGC	2 cut(s)	224, 320
AspS9I	GGNCC	2 cut(s)	169, 445
AsuHPI	GGTGA	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	484
BbvI	GCAGC	2 cut(s)	211, 307
BccI	CCATC	2 cut(s)	322, 328
BcoDI	GTCTC	2 cut(s)	259, 373
BfaI	CTAG	2 cut(s)	53, 293
BfmI	CTRYAG	2 cut(s)	321, 406
BisI	GCNGC	2 cut(s)	225, 321
BlsI	GCNGC	2 cut(s)	226, 322
BmgT120I	GGNCC	2 cut(s)	169, 445
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	2 cut(s)	198, 236
BpiI	GAAGAC	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	211, 307
BshFI	GGCC	3 cut(s)	171, 425, 446
BshNI	GGYRCC	1 cut(s)	508
BslFI	GGGAC	2 cut(s)	20, 263
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	259, 373
BsmFI	GGGAC	2 cut(s)	20, 263
BsnI	GGCC	3 cut(s)	171, 425, 446
Bsp143I	GATC	1 cut(s)	240
BspANI	GGCC	3 cut(s)	171, 425, 446
BspLI	GGNNCC	1 cut(s)	510
BspMAI	CTGCAG	2 cut(s)	325, 410
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	45, 537
BstDEI	CTNAG	3 cut(s)	65, 86, 250
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	2 cut(s)	259, 373
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 221
BstNSI	RCATGY	1 cut(s)	502
BstSFI	CTRYAG	2 cut(s)	321, 406
BstV1I	GCAGC	2 cut(s)	211, 307
BstV2I	GAAGAC	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	171, 425, 446
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	132, 330
Cfr13I	GGNCC	2 cut(s)	169, 445
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	5 cut(s)	166, 181, 237, 372, 499
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	65, 86, 250
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	45, 537
EarI	CTCTTC	2 cut(s)	45, 537
Eco130I	CCWWGG	1 cut(s)	426
Eco57I	CTGAAG	2 cut(s)	65, 478
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	5 cut(s)	169, 184, 240, 375, 502
FalI	AAGNNNNNCTT	6 cut(s)	137, 169, 252, 284, 410, 442
FaqI	GGGAC	2 cut(s)	20, 263
FatI	CATG	5 cut(s)	165, 180, 236, 371, 498
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	225, 321
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	225, 321
FspBI	CTAG	2 cut(s)	53, 293
GluI	GCNGC	2 cut(s)	225, 321
HaeIII	GGCC	3 cut(s)	171, 425, 446
Hin1II	CATG	5 cut(s)	169, 184, 240, 375, 502
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	2 cut(s)	261, 381
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	16, 45, 245
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	95, 189, 323, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 221
HpyF3I	CTNAG	3 cut(s)	65, 86, 250
Hsp92II	CATG	5 cut(s)	169, 184, 240, 375, 502
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	31, 54
LpnPI	CCDG	6 cut(s)	120, 134, 294, 299, 346, 428
Lsp1109I	GCAGC	2 cut(s)	211, 307
LweI	GCATC	2 cut(s)	198, 236
MaeI	CTAG	2 cut(s)	53, 293
MaeIII	GTNAC	3 cut(s)	112, 307, 356
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	3 cut(s)	32, 484, 554
MluCI	AATT	1 cut(s)	401
MnlI	CCTC	6 cut(s)	48, 93, 182, 244, 499, 523
MslI	CAYNNNNRTG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	212, 221
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	5 cut(s)	169, 184, 240, 375, 502
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	3 cut(s)	112, 307, 356
NspI	RCATGY	1 cut(s)	502
OliI	CACNNNNGTG	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	226, 322
PsiI	TTATAA	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	2 cut(s)	169, 445
PstI	CTGCAG	2 cut(s)	325, 410
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	314
SatI	GCNGC	2 cut(s)	225, 321
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	2 cut(s)	169, 445
SfaNI	GCATC	2 cut(s)	198, 236
SfcI	CTRYAG	2 cut(s)	321, 406
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	401
SspMI	CTAG	2 cut(s)	53, 293
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	1 cut(s)	401
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	139, 330
TseFI	GTSAC	3 cut(s)	112, 307, 356
TseI	GCWGC	2 cut(s)	224, 320
Tsp45I	GTSAC	3 cut(s)	112, 307, 356
TspDTI	ATGAA	3 cut(s)	154, 381, 431
TspRI	CASTG	2 cut(s)	139, 330
Van91I	CCANNNNNTGG	1 cut(s)	442
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	53, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.