MD11G1227000.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0019293
Physical Location & Seq
Reverse (-)
33053155 .. 33054089
935 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1227000.v1.1.491

Sequence Viewer

Length: 501 bp
ATGGATGTGAATGTGATGTTTCTAATCGTCATCGCAGTGGCAGCAACAGAAGCGACGTTATGCAGCGCAGAAGCTGCAGAATATGTAGTAGGAGACGACTTAGGCTGGACTATCCCTCCGGATGGCGCTGCCACTTATGCTGCATGGGCTTCTAACCATAGCTTGGTTGTTGGTGACATTCTTGTGTTTAAGTTTGCAGCAGGAGAACAAGACTTGGCATTCGTAACCAAGGAAGATTTGGGCACTTGTAACACCGCAGATCCCTTGCATGTATTTGAGAAGGCAACCACAATAAAATTTCTTGGAACCGACACATATTATGTAACGTCAACTTTTGCCGGGCACTGCAGCAAAGGGCAAAAGATGACTTTTGACATCGCTCCCTCTTCAACTACCAGTACCATTTCACTAGCAAGTCCAAGTCCAAGTCCAAGTGCTGATAAAAAGCCCCTCCAGCAGTCTCTCAACTTTGTGTCTCAGATCTCTGGGCTGGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

167

Amino Acids

17.51

Weight (kDa)

4.47

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 36 - 120 2.7e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019293)

Species Orthologous Gene IDs
malus_domestica MD11G1227000.v1.1
pyrus_communis pycom11g19960
rosa_chinensis RchiOBHm_Chr2g0088041
rosa_multiflora Rmu_sc0003275.1_g000012
rosa_roxburghii Rroxscaffold_2G00153030
rosa_rugosa Rorug01G0480400
rosa_samantha Rh2BG034300 Rh2DG034900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 163
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 1 cut(s) 400
AfiI CCNNNNNNNGG 2 cut(s) 122, 163
AgsI TTSAA 1 cut(s) 390
AluBI AGCT 2 cut(s) 74, 162
AluI AGCT 2 cut(s) 74, 162
Alw26I GTCTC 3 cut(s) 87, 465, 480
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 118
ApeKI GCWGC 7 cut(s) 41, 63, 74, 128, 140, 197, 348
ApoI RAATTY 1 cut(s) 296
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspLEI GCGC 2 cut(s) 68, 128
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 185
BaeGI GKGCMC 2 cut(s) 245, 345
BbvI GCAGC 7 cut(s) 53, 61, 75, 115, 127, 209, 360
BccI CCATC 1 cut(s) 116
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 87, 465, 480
BfaI CTAG 2 cut(s) 410, 499
BfmI CTRYAG 2 cut(s) 75, 346
BfoI RGCGCY 1 cut(s) 129
BglII AGATCT 1 cut(s) 480
BisI GCNGC 7 cut(s) 42, 64, 75, 129, 141, 198, 349
BlsI GCNGC 7 cut(s) 43, 65, 76, 130, 142, 199, 350
Bme1390I CCNGG 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 163
Bse1I ACTGG 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 2 cut(s) 10, 127
BseLI CCNNNNNNNGG 2 cut(s) 122, 163
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 1 cut(s) 396
BseSI GKGCMC 2 cut(s) 245, 345
BseXI GCAGC 7 cut(s) 53, 61, 75, 115, 127, 209, 360
BsiSI CCGG 2 cut(s) 119, 339
BslI CCNNNNNNNGG 2 cut(s) 122, 163
BsmAI GTCTC 3 cut(s) 87, 465, 480
BsmBI CGTCTC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 245, 345
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 259, 480
BspACI CCGC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 490
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 2 cut(s) 79, 350
BspPI GGATC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 259, 480
BssT1I CCWWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 391
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 100, 477
BstF5I GGATG 2 cut(s) 10, 127
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 68, 128
BstKTI GATC 2 cut(s) 262, 483
BstMAI GTCTC 3 cut(s) 87, 465, 480
BstMBI GATC 2 cut(s) 259, 480
BstMWI GCNNNNNNNGC 6 cut(s) 41, 50, 74, 137, 146, 454
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 338
BstSFI CTRYAG 2 cut(s) 75, 346
BstSLI GKGCMC 2 cut(s) 245, 345
BstV1I GCAGC 7 cut(s) 53, 61, 75, 115, 127, 209, 360
BstX2I RGATCY 2 cut(s) 259, 480
BstYI RGATCY 2 cut(s) 259, 480
BtgZI GCGATG 2 cut(s) 16, 361
BtsCI GGATG 2 cut(s) 10, 127
BtsI GCAGTG 2 cut(s) 42, 343
BtsIMutI CAGTG 2 cut(s) 42, 343
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 2 cut(s) 68, 128
Csp6I GTAC 1 cut(s) 399
CviAII CATG 2 cut(s) 144, 269
CviJI RGCY 6 cut(s) 74, 105, 149, 162, 448, 490
CviKI_1 RGCY 6 cut(s) 74, 105, 149, 162, 448, 490
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 2 cut(s) 100, 477
DpnI GATC 2 cut(s) 261, 482
DpnII GATC 2 cut(s) 259, 480
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 2 cut(s) 147, 272
FaiI YATR 8 cut(s) 61, 84, 138, 145, 159, 270, 316, 321
FatI CATG 2 cut(s) 143, 268
Fnu4HI GCNGC 7 cut(s) 42, 64, 75, 129, 141, 198, 349
FokI GGATG 2 cut(s) 17, 134
Fsp4HI GCNGC 7 cut(s) 42, 64, 75, 129, 141, 198, 349
FspBI CTAG 2 cut(s) 410, 499
GlaI GCGC 2 cut(s) 67, 127
GluI GCNGC 7 cut(s) 42, 64, 75, 129, 141, 198, 349
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 2 cut(s) 119, 339
HhaI GCGC 2 cut(s) 68, 128
Hin1II CATG 2 cut(s) 147, 272
Hin6I GCGC 2 cut(s) 66, 126
HinP1I GCGC 2 cut(s) 66, 126
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HpaII CCGG 2 cut(s) 119, 339
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 56, 326
HpyCH4V TGCA 6 cut(s) 63, 77, 143, 197, 268, 348
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 50, 74, 137, 146, 454
HpyF3I CTNAG 2 cut(s) 100, 477
HpySE526I ACGT 2 cut(s) 56, 326
Hsp92II CATG 2 cut(s) 147, 272
HspAI GCGC 2 cut(s) 66, 126
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 259, 480
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 8 cut(s) 91, 132, 186, 352, 409, 467, 471, 476
Lsp1109I GCAGC 7 cut(s) 53, 61, 75, 115, 127, 209, 360
MaeI CTAG 2 cut(s) 410, 499
MaeII ACGT 2 cut(s) 56, 326
MaeIII GTNAC 4 cut(s) 173, 223, 248, 322
MalI GATC 2 cut(s) 261, 482
MboI GATC 2 cut(s) 259, 480
MboII GAAGA 2 cut(s) 245, 378
MflI RGATCY 2 cut(s) 259, 480
MhlI GDGCHC 2 cut(s) 245, 345
MluCI AATT 1 cut(s) 296
MnlI CCTC 3 cut(s) 126, 394, 461
MroI TCCGGA 1 cut(s) 118
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 35, 182
MspI CCGG 2 cut(s) 119, 339
MspR9I CCNGG 1 cut(s) 340
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 6 cut(s) 41, 50, 74, 137, 146, 454
NciI CCSGG 1 cut(s) 340
NdeII GATC 2 cut(s) 259, 480
NlaIII CATG 2 cut(s) 147, 272
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 1 cut(s) 272
PctI GAATGC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 163
PkrI GCNGC 7 cut(s) 43, 65, 76, 130, 142, 199, 350
PspN4I GGNNCC 1 cut(s) 307
PstI CTGCAG 2 cut(s) 79, 350
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 2 cut(s) 259, 480
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
RseI CAYNNNNRTG 2 cut(s) 35, 182
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 7 cut(s) 42, 64, 75, 129, 141, 198, 349
Sau3AI GATC 2 cut(s) 259, 480
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 2 cut(s) 245, 345
SetI ASST 4 cut(s) 59, 76, 164, 329
SfcI CTRYAG 2 cut(s) 75, 346
SmiMI CAYNNNNRTG 2 cut(s) 35, 182
Sse9I AATT 1 cut(s) 296
SsiI CCGC 1 cut(s) 255
SspMI CTAG 2 cut(s) 410, 499
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 2 cut(s) 59, 329
TasI AATT 1 cut(s) 296
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 42, 350
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 7 cut(s) 41, 63, 74, 128, 140, 197, 348
Tsp45I GTSAC 1 cut(s) 173
TspRI CASTG 2 cut(s) 42, 350
Van91I CCANNNNNTGG 1 cut(s) 163
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XspI CTAG 2 cut(s) 410, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.