pycom11g19960

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0019293
Physical Location & Seq
Reverse (-)
22500344 .. 22501286
943 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g19960.1

Sequence Viewer

Length: 513 bp
ATGAGTATAAGCATGGATGTGAACGTGATGTTTCTAATCGTCATCGCAGTGGCAGCAACAGAAGCGACGTTACGTAGCGCAGAAGCTGCAGAATATGTAGTAGGAGACGACTTAGGCTGGACTATCCCTCCGGATGGCGCTGCCACTTATGCTGCATGGGCTTCTAACCATAGCTTGTTTGTTGGTGACATTCTTGTGTTTAAGTTTGCAGCAGGAGAACAAGACTTGGCATTCGTAACCAAGGAAGATTTGGGCACTTGTAACACCGCAGATCCCTTGCATGTATTTGAGAATGCAACCACAATAAAATTTCTTGGAACCGACACATATTATGTAACGTCAACTTTTGCCGGGCACTGCAGCAAAGGGCAAAAGATGACTTTTGACATCGCTCCCTCTTCAACCACCAGTACCATTTCACTAGCCAGTCCAAGTCCAAGTCCAAGTGCGGATAAAAAGCCCCTCCAGCAGTCTCTCAACTTTGTGTCTCAGATCTCCGGGCTGGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

171

Amino Acids

18.01

Weight (kDa)

4.47

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 124 4.1e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019293)

Species Orthologous Gene IDs
malus_domestica MD11G1227000.v1.1
pyrus_communis pycom11g19960
rosa_chinensis RchiOBHm_Chr2g0088041
rosa_multiflora Rmu_sc0003275.1_g000012
rosa_roxburghii Rroxscaffold_2G00153030
rosa_rugosa Rorug01G0480400
rosa_samantha Rh2BG034300 Rh2DG034900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 2 cut(s) 267, 449
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 402
AluBI AGCT 2 cut(s) 86, 174
AluI AGCT 2 cut(s) 86, 174
Alw26I GTCTC 3 cut(s) 99, 477, 492
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 130
ApeKI GCWGC 6 cut(s) 53, 86, 140, 152, 209, 360
ApoI RAATTY 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspLEI GCGC 2 cut(s) 80, 140
AsuC2I CCSGG 2 cut(s) 352, 499
AsuHPI GGTGA 1 cut(s) 197
BaeGI GKGCMC 2 cut(s) 257, 357
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BbvI GCAGC 6 cut(s) 65, 73, 127, 139, 221, 372
BccI CCATC 1 cut(s) 128
BcnI CCSGG 2 cut(s) 352, 499
BcoDI GTCTC 3 cut(s) 99, 477, 492
BfaI CTAG 2 cut(s) 422, 511
BfmI CTRYAG 2 cut(s) 87, 358
BfoI RGCGCY 1 cut(s) 141
BglII AGATCT 1 cut(s) 492
BisI GCNGC 6 cut(s) 54, 87, 141, 153, 210, 361
BlsI GCNGC 6 cut(s) 55, 88, 142, 154, 211, 362
Bme1390I CCNGG 2 cut(s) 352, 499
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 2 cut(s) 352, 499
BpmI CTGGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 352, 499
BsaAI YACGTR 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 408, 426
BseAI TCCGGA 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 22, 139
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 2 cut(s) 408, 426
BseSI GKGCMC 2 cut(s) 257, 357
BseXI GCAGC 6 cut(s) 65, 73, 127, 139, 221, 372
BsiSI CCGG 3 cut(s) 131, 351, 498
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 3 cut(s) 99, 477, 492
BsmBI CGTCTC 1 cut(s) 99
BsmI GAATGC 2 cut(s) 230, 298
Bsp1286I GDGCHC 2 cut(s) 257, 357
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 2 cut(s) 271, 492
BspACI CCGC 2 cut(s) 267, 449
BspCNI CTCAG 1 cut(s) 502
BspEI TCCGGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 319
BspMAI CTGCAG 2 cut(s) 91, 362
BspPI GGATC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 408, 426
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 271, 492
BssT1I CCWWGG 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 403
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 112, 489
BstF5I GGATG 2 cut(s) 22, 139
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 80, 140
BstKTI GATC 2 cut(s) 274, 495
BstMAI GTCTC 3 cut(s) 99, 477, 492
BstMBI GATC 2 cut(s) 271, 492
BstMWI GCNNNNNNNGC 6 cut(s) 53, 62, 86, 149, 158, 466
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 350, 497
BstSFI CTRYAG 2 cut(s) 87, 358
BstSLI GKGCMC 2 cut(s) 257, 357
BstSNI TACGTA 1 cut(s) 74
BstV1I GCAGC 6 cut(s) 65, 73, 127, 139, 221, 372
BstX2I RGATCY 2 cut(s) 271, 492
BstYI RGATCY 2 cut(s) 271, 492
BtgZI GCGATG 2 cut(s) 28, 373
BtsCI GGATG 2 cut(s) 22, 139
BtsI GCAGTG 2 cut(s) 54, 355
BtsIMutI CAGTG 2 cut(s) 54, 355
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 2 cut(s) 80, 140
Csp6I GTAC 1 cut(s) 411
CviAII CATG 3 cut(s) 13, 156, 281
CviJI RGCY 7 cut(s) 86, 117, 161, 174, 425, 460, 502
CviKI_1 RGCY 7 cut(s) 86, 117, 161, 174, 425, 460, 502
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 2 cut(s) 112, 489
DpnI GATC 2 cut(s) 273, 494
DpnII GATC 2 cut(s) 271, 492
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Eco105I TACGTA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 3 cut(s) 16, 159, 284
FaiI YATR 9 cut(s) 8, 14, 96, 150, 157, 171, 282, 328, 333
FatI CATG 3 cut(s) 12, 155, 280
Fnu4HI GCNGC 6 cut(s) 54, 87, 141, 153, 210, 361
FokI GGATG 2 cut(s) 29, 146
Fsp4HI GCNGC 6 cut(s) 54, 87, 141, 153, 210, 361
FspBI CTAG 2 cut(s) 422, 511
GlaI GCGC 2 cut(s) 79, 139
GluI GCNGC 6 cut(s) 54, 87, 141, 153, 210, 361
GsuI CTGGAG 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 141
HapII CCGG 3 cut(s) 131, 351, 498
HhaI GCGC 2 cut(s) 80, 140
Hin1II CATG 3 cut(s) 16, 159, 284
Hin6I GCGC 2 cut(s) 78, 138
HinP1I GCGC 2 cut(s) 78, 138
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HpaII CCGG 3 cut(s) 131, 351, 498
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 2 cut(s) 22, 342
Hpy188I TCNGA 1 cut(s) 492
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 22, 342
Hpy99I CGWCG 1 cut(s) 70
HpyCH4IV ACGT 4 cut(s) 24, 68, 73, 338
HpyCH4V TGCA 6 cut(s) 89, 155, 209, 280, 296, 360
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 62, 86, 149, 158, 466
HpyF3I CTNAG 2 cut(s) 112, 489
HpySE526I ACGT 4 cut(s) 24, 68, 73, 338
Hsp92II CATG 3 cut(s) 16, 159, 284
HspAI GCGC 2 cut(s) 78, 138
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 271, 492
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 8 cut(s) 103, 144, 198, 364, 421, 439, 479, 488
Lsp1109I GCAGC 6 cut(s) 65, 73, 127, 139, 221, 372
MaeI CTAG 2 cut(s) 422, 511
MaeII ACGT 4 cut(s) 24, 68, 73, 338
MaeIII GTNAC 5 cut(s) 69, 185, 235, 260, 334
MalI GATC 2 cut(s) 273, 494
MboI GATC 2 cut(s) 271, 492
MboII GAAGA 2 cut(s) 257, 390
MflI RGATCY 2 cut(s) 271, 492
MhlI GDGCHC 2 cut(s) 257, 357
MluCI AATT 1 cut(s) 308
MnlI CCTC 3 cut(s) 138, 406, 473
MroI TCCGGA 1 cut(s) 130
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 3 cut(s) 17, 47, 194
MspI CCGG 3 cut(s) 131, 351, 498
MspR9I CCNGG 2 cut(s) 352, 499
Mva1269I GAATGC 2 cut(s) 230, 298
MwoI GCNNNNNNNGC 6 cut(s) 53, 62, 86, 149, 158, 466
NciI CCSGG 2 cut(s) 352, 499
NdeII GATC 2 cut(s) 271, 492
NlaIII CATG 3 cut(s) 16, 159, 284
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 284
PctI GAATGC 2 cut(s) 230, 298
PkrI GCNGC 6 cut(s) 55, 88, 142, 154, 211, 362
Ppu21I YACGTR 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 319
PstI CTGCAG 2 cut(s) 91, 362
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 2 cut(s) 271, 492
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
RseI CAYNNNNRTG 3 cut(s) 17, 47, 194
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 6 cut(s) 54, 87, 141, 153, 210, 361
Sau3AI GATC 2 cut(s) 271, 492
ScrFI CCNGG 2 cut(s) 352, 499
SduI GDGCHC 2 cut(s) 257, 357
SetI ASST 6 cut(s) 27, 71, 76, 88, 176, 341
SfcI CTRYAG 2 cut(s) 87, 358
SmiMI CAYNNNNRTG 3 cut(s) 17, 47, 194
SnaBI TACGTA 1 cut(s) 74
Sse9I AATT 1 cut(s) 308
SsiI CCGC 2 cut(s) 267, 449
SspMI CTAG 2 cut(s) 422, 511
StyD4I CCNGG 2 cut(s) 350, 497
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 4 cut(s) 27, 71, 76, 341
TasI AATT 1 cut(s) 308
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 54, 362
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 6 cut(s) 53, 86, 140, 152, 209, 360
Tsp45I GTSAC 1 cut(s) 185
TspRI CASTG 2 cut(s) 54, 362
XapI RAATTY 1 cut(s) 308
XceI RCATGY 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 2 cut(s) 422, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.