Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005512

Physical Location & Seq

Genomic Coordinates Reverse (-)

56848689 .. 56852650

Gene Structure 3962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0480400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGAGCAGGGAGGGGTCTCCGGATTGGCTGCGCACTTTTCAGGTCCCAAAAACTGAGTCAGTACTGTCATTGTCCTCAGATTCTGAGTCTTCATTGAATGGACTTAATTCGGGGGAGGATAACAGTGATGGCCCAGAACTATCTCCTCATAAATCATCTGGATTCGATGAAGATGATGATGATGAAGTTATCGGTAAATTTCTTGGGAAAAGTGTTGCAGGGTCTCCATCTGATAAGAGATTGAAAGGCAAGTCTCCGAAACGAGGGGAAAAATTAGAAGAAGATATACCCCAGAAAAAGAAGAAGTCAGACGGATCCAAGAAGAGAGAAGGTAAAACAAGGACCGTTGTTGAGAAGCCTTCAAAGACTCATGAACCGAATGATTCAGTTTTGGCGTTGTCATCAGATTCTGATCCTGAAAACAGTCCTCCCAGAGAGGATGGTATCCATGATGGAGAATCTTCTGACCTTAAAACGTCTCAACTGCAATCAATAGGTAACAGTGAGGATGCAGATCTTATGGGCAGTAGTGGAGAGTCTCCATCTAAACAGGCTACAAAAGGAAAATCTTTGAAGAAAAGTCCAAAAGGAAAAGGCCAGTCACCCAAGAAAGAGAAGAAAAAGATAGATAGCAAAGAAAAAGAAGGAATTTGTGGCGATGTGGAAGTGGCAGAGAAAGAAGCTTCTGACAAGCACATTGAACCACGTGTATCCACCTCAACATTGCCGTTGGTGCTCTCTGAGAAAGTCCATCGTACAAAGGCACTTGTTGAGTGTGAAAAGGACTCCATAGATTTGAGTGGTGATATGGGTGCTGTAGGACGGGTAGTAGTTTCAGATTCTAGATCTGGGCATAGCGAGATGTGCTTAGATTTAAAAGGAACCATTTACAAAACAACGATAGTTCCTTCCAGGACATTTTGTGTTGTTAGCTTTGGACCGTCCGAGGCAAAGATAGAAGCTATCATGAATGACTTCATTCAGCTGAAACCAGAAACATATGAAGCTGAAACAATGGTTGAAGGAACACTAGAGGGTTTCTTATTTGATTCCGAAGATGAGGCTGACAAAGTTCCTAAAGCAACTCCTCATCAAACTGATAAGAATGAGGATACTGAAGAACAAACCAATGGGACAACCAAAGGGAAAGCTGACAAAGCATCGAGGGTTGTAAAGAAGAGAGATAAGCCTGCAGGAGGGAAGCCACAGCCACCAAAGAAAGCAAGAAAGAAAACTCAAGTTTCCAAGAAGCCCAAGAACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

422

Amino Acids

45.78

Weight (kDa)

6.71

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02890 FvH4_1g02900
malus_domestica	MD02G1028700.v1.1 MD02G1028800.v1.1 MD15G1170300.v1.1 MD15G1170400.v1.1
prunus_persica	Prupe.7G246200_v2.0.a1
pyrus_communis	pycom02g02340 pycom02g02350 pycom15g15180 pycom15g15190
rosa_chinensis	RchiOBHm_Chr2g0088011 RchiOBHm_Chr2g0088031
rosa_laevigata	RLG00000015918
rosa_multiflora	Rmu_sc0003275.1_g000008 Rmu_sc0003275.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153050 Rroxscaffold_2G00153060
rosa_rugosa	Rorug01G0480300 Rorug01G0480400
rosa_samantha	Rh2AG035100 Rh2AG035200 Rh2BG034100 Rh2BG034200 Rh2CG035100 Rh2CG035300 Rh2DG034800
rosa_wichuraiana	Rw2G002760 Rw2G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	3 cut(s)	309, 322, 407
AcsI	RAATTY	2 cut(s)	197, 648
AcuI	CTGAAG	1 cut(s)	1137
AcvI	CACGTG	1 cut(s)	707
AfaI	GTAC	2 cut(s)	63, 757
AfiI	CCNNNNNNNGG	2 cut(s)	263, 1196
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	6 cut(s)	97, 244, 363, 574, 701, 1022
AjnI	CCWGG	1 cut(s)	911
AluBI	AGCT	6 cut(s)	683, 933, 962, 985, 1007, 1151
AluI	AGCT	6 cut(s)	683, 933, 962, 985, 1007, 1151
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	5 cut(s)	21, 228, 258, 483, 543
AlwI	GGATC	3 cut(s)	309, 322, 407
AlwNI	CAGNNNCTG	2 cut(s)	83, 410
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	130, 595
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	2 cut(s)	197, 648
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	4 cut(s)	43, 131, 342, 938
AsuHPI	GGTGA	2 cut(s)	594, 815
AvaII	GGWCC	3 cut(s)	43, 342, 938
BamHI	GGATCC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BbrPI	CACGTG	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	6 cut(s)	122, 235, 434, 446, 550, 759
BceAI	ACGGC	1 cut(s)	712
BciT130I	CCWGG	1 cut(s)	913
BciVI	GTATCC	3 cut(s)	455, 721, 1105
BcoDI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BfaI	CTAG	2 cut(s)	843, 1031
BfmI	CTRYAG	2 cut(s)	816, 1191
BfuI	GTATCC	3 cut(s)	455, 721, 1105
BglII	AGATCT	2 cut(s)	514, 845
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	913
Bme18I	GGWCC	3 cut(s)	43, 342, 938
BmgT120I	GGNCC	4 cut(s)	43, 131, 342, 938
BmiI	GGNNCC	3 cut(s)	45, 316, 883
BmrFI	CCNGG	1 cut(s)	913
BmsI	GCATC	2 cut(s)	499, 1169
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	1221
BsaAI	YACGTR	1 cut(s)	707
BsaBI	GATNNNNATC	2 cut(s)	411, 513
BsaI	GGTCTC	2 cut(s)	21, 228
BsaJI	CCNNGG	1 cut(s)	945
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 1196
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	722
Bse8I	GATNNNNATC	2 cut(s)	411, 513
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	913
BseDI	CCNNGG	1 cut(s)	945
BseGI	GGATG	2 cut(s)	445, 514
BseJI	GATNNNNATC	2 cut(s)	411, 513
BseLI	CCNNNNNNNGG	2 cut(s)	263, 1196
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	45, 75, 90, 732
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	2 cut(s)	135, 1077
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	2 cut(s)	132, 597
BsiHKAI	GWGCWC	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	29, 1147
BslI	CCNNNNNNNGG	2 cut(s)	263, 1196
BsmAI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	2 cut(s)	29, 1147
BsnI	GGCC	2 cut(s)	132, 597
Bso31I	GGTCTC	2 cut(s)	21, 228
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	314, 412, 514, 845
BspANI	GGCC	2 cut(s)	132, 597
BspCNI	CTCAG	4 cut(s)	46, 76, 89, 733
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	2 cut(s)	370, 966
BspLI	GGNNCC	3 cut(s)	45, 316, 883
BspMAI	CTGCAG	1 cut(s)	1195
BspPI	GGATC	3 cut(s)	309, 322, 407
BspTNI	GGTCTC	2 cut(s)	21, 228
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	945
BssMI	GATC	4 cut(s)	314, 412, 514, 845
Bst2UI	CCWGG	1 cut(s)	913
Bst4CI	ACNGT	6 cut(s)	66, 125, 346, 425, 503, 942
Bst6I	CTCTTC	2 cut(s)	317, 1172
BstBAI	YACGTR	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	1191
BstDEI	CTNAG	5 cut(s)	54, 76, 84, 741, 868
BstENI	CCTNNNNNAGG	1 cut(s)	1194
BstF5I	GGATG	2 cut(s)	445, 514
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	4 cut(s)	317, 415, 517, 848
BstMAI	GTCTC	5 cut(s)	21, 228, 258, 483, 543
BstMBI	GATC	4 cut(s)	314, 412, 514, 845
BstMWI	GCNNNNNNNGC	3 cut(s)	733, 864, 1157
BstNI	CCWGG	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	911
BstSFI	CTRYAG	2 cut(s)	816, 1191
BstV1I	GCAGC	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	3 cut(s)	314, 514, 845
BstYI	RGATCY	3 cut(s)	314, 514, 845
BsuI	GTATCC	3 cut(s)	455, 721, 1105
BsuRI	GGCC	2 cut(s)	132, 597
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	2 cut(s)	445, 514
BtsIMutI	CAGTG	2 cut(s)	130, 508
Cac8I	GCNNGC	1 cut(s)	1191
CaiI	CAGNNNCTG	2 cut(s)	83, 410
CciI	TCATGA	2 cut(s)	370, 966
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	4 cut(s)	43, 131, 342, 938
Csp6I	GTAC	2 cut(s)	62, 756
CviAII	CATG	3 cut(s)	371, 449, 967
CviQI	GTAC	2 cut(s)	62, 756
DdeI	CTNAG	5 cut(s)	54, 76, 84, 741, 868
DpnI	GATC	4 cut(s)	316, 414, 516, 847
DpnII	GATC	4 cut(s)	314, 412, 514, 845
DraI	TTTAAA	1 cut(s)	876
Eam1104I	CTCTTC	2 cut(s)	317, 1172
EarI	CTCTTC	2 cut(s)	317, 1172
Eco31I	GGTCTC	2 cut(s)	21, 228
Eco47I	GGWCC	3 cut(s)	43, 342, 938
Eco57I	CTGAAG	1 cut(s)	1137
Eco72I	CACGTG	1 cut(s)	707
EcoNI	CCTNNNNNAGG	1 cut(s)	1194
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	911
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	3 cut(s)	374, 452, 970
FaqI	GGGAC	2 cut(s)	29, 1147
FatI	CATG	3 cut(s)	370, 448, 966
FauNDI	CATATG	1 cut(s)	1000
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	452, 521
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	843, 1031
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	132, 597
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	374, 452, 970
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	681
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	594, 815
Hpy188III	TCNNGA	6 cut(s)	20, 159, 371, 416, 843, 967
HpyAV	CCTTC	5 cut(s)	323, 369, 638, 918, 1016
HpyCH4III	ACNGT	6 cut(s)	66, 125, 346, 425, 503, 942
HpyCH4IV	ACGT	2 cut(s)	476, 706
HpyCH4V	TGCA	4 cut(s)	218, 487, 512, 1193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	733, 864, 1157
HpyF3I	CTNAG	5 cut(s)	54, 76, 84, 741, 868
HpySE526I	ACGT	2 cut(s)	476, 706
Hsp92II	CATG	3 cut(s)	374, 452, 970
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	314, 412, 514, 845
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	2 cut(s)	499, 1169
MaeI	CTAG	2 cut(s)	843, 1031
MaeII	ACGT	2 cut(s)	476, 706
MaeIII	GTNAC	2 cut(s)	497, 600
MalI	GATC	4 cut(s)	316, 414, 516, 847
MboI	GATC	4 cut(s)	314, 412, 514, 845
MflI	RGATCY	3 cut(s)	314, 514, 845
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	4 cut(s)	106, 197, 272, 648
MlyI	GAGTC	5 cut(s)	65, 95, 361, 545, 779
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	974
MseI	TTAA	3 cut(s)	105, 471, 875
MspA1I	CMGCKG	1 cut(s)	985
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	913
MvaI	CCWGG	1 cut(s)	913
MwoI	GCNNNNNNNGC	3 cut(s)	733, 864, 1157
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	4 cut(s)	314, 412, 514, 845
NlaIII	CATG	3 cut(s)	374, 452, 970
NlaIV	GGNNCC	3 cut(s)	45, 316, 883
NmuCI	GTSAC	1 cut(s)	600
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	2 cut(s)	370, 966
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	7 cut(s)	80, 162, 383, 407, 458, 839, 1049
PfoI	TCCNGGA	1 cut(s)	911
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	5 cut(s)	64, 94, 361, 544, 779
PmaCI	CACGTG	1 cut(s)	707
PmlI	CACGTG	1 cut(s)	707
PpsI	GAGTC	5 cut(s)	64, 94, 361, 544, 779
Ppu21I	YACGTR	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	911
PspCI	CACGTG	1 cut(s)	707
PspGI	CCWGG	1 cut(s)	911
PspN4I	GGNNCC	3 cut(s)	45, 316, 883
PspPI	GGNCC	4 cut(s)	43, 131, 342, 938
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1195
PstNI	CAGNNNCTG	2 cut(s)	83, 410
PsuI	RGATCY	3 cut(s)	314, 514, 845
PvuII	CAGCTG	1 cut(s)	985
RsaI	GTAC	2 cut(s)	63, 757
RsaNI	GTAC	2 cut(s)	62, 756
SaqAI	TTAA	3 cut(s)	105, 471, 875
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	4 cut(s)	314, 412, 514, 845
Sau96I	GGNCC	4 cut(s)	43, 131, 342, 938
SbfI	CCTGCAGG	1 cut(s)	1195
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	5 cut(s)	65, 95, 361, 545, 779
ScrFI	CCNGG	1 cut(s)	913
SdaI	CCTGCAGG	1 cut(s)	1195
SduI	GDGCHC	1 cut(s)	738
SfaNI	GCATC	2 cut(s)	499, 1169
SfcI	CTRYAG	2 cut(s)	816, 1191
SinI	GGWCC	3 cut(s)	43, 342, 938
SmlI	CTYRAG	1 cut(s)	1236
SmoI	CTYRAG	1 cut(s)	1236
Sse8387I	CCTGCAGG	1 cut(s)	1195
Sse9I	AATT	4 cut(s)	106, 197, 272, 648
SspMI	CTAG	2 cut(s)	843, 1031
StyD4I	CCNGG	1 cut(s)	911
TaaI	ACNGT	6 cut(s)	66, 125, 346, 425, 503, 942
TaiI	ACGT	2 cut(s)	479, 709
TaqI	TCGA	2 cut(s)	165, 1163
TasI	AATT	4 cut(s)	106, 197, 272, 648
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	7 cut(s)	80, 162, 383, 407, 458, 839, 1049
Tru1I	TTAA	3 cut(s)	105, 471, 875
Tru9I	TTAA	3 cut(s)	105, 471, 875
TscAI	CASTG	2 cut(s)	130, 508
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	7 cut(s)	81, 183, 198, 387, 967, 983, 1017
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	130, 508
VpaK11BI	GGWCC	3 cut(s)	43, 342, 938
XagI	CCTNNNNNAGG	1 cut(s)	1194
XapI	RAATTY	2 cut(s)	197, 648
XbaI	TCTAGA	1 cut(s)	842
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	2 cut(s)	843, 1031
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.