pycom02g02340

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0005512
Physical Location & Seq
Reverse (-)
1440651 .. 1442307
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02340.2

Sequence Viewer

Length: 1128 bp
ATGGCAAGGAACACAAACATGGCGTTTTTCGCAGCCATGGCAGCGGCCGCTTTGCTAATGAGCTCGGCTGCAGCGGCAACTACTTACCAAGTGGGCGATGGGTTGAGTTGGGTTGTCCCTCCCGGTGGTGCCGCAGCTTATGCTACATGGGCTGCCAACAAAACCTTCGTTGTCGGCGACACTCTTGTATTCACATTTACGAGCGGAAGTCATGACGTGGCGGAAGTGACAAAGGCAGCTTTTGATGCTTGCAATGTAACTAGTCCCATTACTTTGGAGACTGCCAGCCCTACAAATATCACTCTTAGTTCTTCAGGGGAGCATTACTACATCTGCACCTTCGCTGGCCATTGCAGTGCCGGTCAGAAATTGTCCATCAATGTGAACGGAGCTTCTTCTCCGGCTCCGGCTCCAAGTACTACTCCTCCTCCTCCACCTTCACCACCGGCCTCTGTTCCAGCACCGGCTCCAAGTACTACCTCTCCTCCCCCTTCACCTTCACCACCGACCTCTGTTCCGGCACCGGCTCCGAGTACCAGTACTCCTACCCCTGCTGCTTCCCCAGCACCAACACCAAGCTCCACAAGAGCACCTGTCAATTGGACCGTTGGCAACAACTCCGGATGGACCGTCCTCCCTCCAGGCTCTTACCAAACTTGGGCTGCTAACAAGACCTTTTTGGTTGGTGACACTCTAGTGTTCAACTATTTGAACGGAACACACGACGTGGCAGTGGTGACCAAGGCAAACTACGACTCATGCAACACCAACAACACCCTCGCTCTGTTCAGGAACCCACCAACGAGAATCACTCTCAACACCACCGGCGAGAATTTCTTCATCTGCACTTTCACCGGCCACTGTGCCGGAGGCCAAAAGCTTGCCATCAATGTCACCGCCGGCAGCACCACCGCCACGCCACCTTCCTCCACCGCCACTCCTCCAGGCAGCAGTGCCACCCCTCCAGGCTCTAGTGCCACCCCTCCATCTGGAACTCCAACCACCCCAACTACTCCGTCGTCACCGACACCTGAAGGTGGTGCAGCACCACCAAATGCAGCAGCTTCTCTCGGCGCCGCTGGCCTTTCCGCTACCTTTTTGTCCATTGCTCTAGCTTTGTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

376

Amino Acids

37.35

Weight (kDa)

6.16

Isoelectric Point (pI)

54.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 128, 520, 1073
AccBSI CCGCTC 1 cut(s) 204
AccIII TCCGGA 1 cut(s) 620
AcoI YGGCCR 3 cut(s) 45, 346, 856
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 2 cut(s) 297, 1053
AcyI GRCGYC 1 cut(s) 1074
AdeI CACNNNGTG 1 cut(s) 727
AfaI GTAC 4 cut(s) 418, 475, 535, 541
AfiI CCNNNNNNNGG 4 cut(s) 125, 658, 989, 1037
AgsI TTSAA 2 cut(s) 703, 712
AhlI ACTAGT 1 cut(s) 260
AjiI CACGTC 2 cut(s) 217, 727
AjnI CCWGG 3 cut(s) 640, 943, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AleI CACNNNNGTG 1 cut(s) 695
AluBI AGCT 8 cut(s) 63, 137, 239, 392, 579, 880, 1064, 1115
AluI AGCT 8 cut(s) 63, 137, 239, 392, 579, 880, 1064, 1115
Alw21I GWGCWC 2 cut(s) 65, 592
Alw26I GTCTC 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 620
AoxI GGCC 6 cut(s) 45, 346, 447, 856, 871, 1081
ApoI RAATTY 1 cut(s) 832
Asp700I GAANNNNTTC 1 cut(s) 836
AspLEI GCGC 1 cut(s) 1076
AspS9I GGNCC 2 cut(s) 603, 627
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 8 cut(s) 432, 486, 492, 698, 748, 844, 886, 1014
AvaII GGWCC 2 cut(s) 603, 627
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 3 cut(s) 128, 520, 1073
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 2 cut(s) 65, 592
BccI CCATC 5 cut(s) 92, 383, 618, 893, 994
BciT130I CCWGG 3 cut(s) 642, 945, 966
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 272
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 4 cut(s) 261, 695, 972, 1112
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 1077
BmcAI AGTACT 3 cut(s) 418, 475, 541
Bme1390I CCNGG 4 cut(s) 123, 642, 945, 966
Bme18I GGWCC 2 cut(s) 603, 627
BmgBI CACGTC 2 cut(s) 217, 727
BmgT120I GGNCC 2 cut(s) 603, 627
BmiI GGNNCC 8 cut(s) 130, 405, 411, 468, 522, 528, 794, 1075
BmrFI CCNGG 4 cut(s) 123, 642, 945, 966
BmsI GCATC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 796, 828
BpmI CTGGAG 3 cut(s) 624, 927, 948
BpuMI CCSGG 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 1074
BsaJI CCNNGG 2 cut(s) 36, 741
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 658, 989, 1037
Bse118I RCCGGY 7 cut(s) 359, 445, 463, 523, 824, 854, 899
Bse1I ACTGG 1 cut(s) 537
Bse3DI GCAATG 3 cut(s) 259, 349, 1104
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 3 cut(s) 642, 945, 966
BseDI CCNNGG 2 cut(s) 36, 741
BseGI GGATG 1 cut(s) 629
BseLI CCNNNNNNNGG 4 cut(s) 125, 658, 989, 1037
BseMI GCAATG 3 cut(s) 259, 349, 1104
BseNI ACTGG 1 cut(s) 537
BseRI GAGGAG 5 cut(s) 414, 417, 420, 474, 930
BseX3I CGGCCG 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 562
BsgI GTGCAG 3 cut(s) 319, 829, 1062
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 6 cut(s) 47, 348, 449, 858, 873, 1083
BshNI GGYRCC 3 cut(s) 128, 520, 1073
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 65, 592
BslFI GGGAC 2 cut(s) 101, 249
BslI CCNNNNNNNGG 4 cut(s) 125, 658, 989, 1037
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 2 cut(s) 101, 249
BsnI GGCC 6 cut(s) 47, 348, 449, 858, 873, 1083
Bsp1286I GDGCHC 2 cut(s) 65, 592
Bsp13I TCCGGA 1 cut(s) 620
Bsp19I CCATGG 1 cut(s) 36
BspANI GGCC 6 cut(s) 47, 348, 449, 858, 873, 1083
BspEI TCCGGA 1 cut(s) 620
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 8 cut(s) 130, 405, 411, 468, 522, 528, 794, 1075
BspMAI CTGCAG 1 cut(s) 73
BspT107I GGYRCC 3 cut(s) 128, 520, 1073
BsrBI CCGCTC 1 cut(s) 204
BsrDI GCAATG 3 cut(s) 259, 349, 1104
BsrFI RCCGGY 7 cut(s) 359, 445, 463, 523, 824, 854, 899
BsrI ACTGG 1 cut(s) 537
BssAI RCCGGY 7 cut(s) 359, 445, 463, 523, 824, 854, 899
BssECI CCNNGG 2 cut(s) 36, 741
BssNI GRCGYC 1 cut(s) 1074
BssT1I CCWWGG 2 cut(s) 36, 741
Bst2UI CCWGG 3 cut(s) 642, 945, 966
Bst4CI ACNGT 3 cut(s) 607, 631, 863
BstACI GRCGYC 1 cut(s) 1074
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 6 cut(s) 250, 286, 346, 882, 901, 1081
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 736
BstF5I GGATG 1 cut(s) 629
BstH2I RGCGCY 1 cut(s) 1077
BstHHI GCGC 1 cut(s) 1076
BstMAI GTCTC 1 cut(s) 272
BstMCI CGRYCG 1 cut(s) 48
BstNI CCWGG 3 cut(s) 642, 945, 966
BstPI GGTNACC 1 cut(s) 736
BstSCI CCNGG 4 cut(s) 121, 640, 943, 964
BstSFI CTRYAG 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 274
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 6 cut(s) 47, 348, 449, 858, 873, 1083
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 111
BtrI CACGTC 2 cut(s) 217, 727
BtsCI GGATG 1 cut(s) 629
BtsI GCAGTG 3 cut(s) 361, 738, 958
BtsIMutI CAGTG 4 cut(s) 361, 738, 859, 958
Cac8I GCNNGC 6 cut(s) 250, 286, 346, 882, 901, 1081
CciI TCATGA 1 cut(s) 211
CciNI GCGGCCGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 1076
Cfr10I RCCGGY 7 cut(s) 359, 445, 463, 523, 824, 854, 899
Cfr13I GGNCC 2 cut(s) 603, 627
Csp6I GTAC 4 cut(s) 417, 474, 534, 540
CviAII CATG 5 cut(s) 19, 37, 147, 212, 759
CviQI GTAC 4 cut(s) 417, 474, 534, 540
DdeI CTNAG 1 cut(s) 305
DinI GGCGCC 1 cut(s) 1075
DraIII CACNNNGTG 1 cut(s) 727
EaeI YGGCCR 3 cut(s) 45, 346, 856
EagI CGGCCG 1 cut(s) 45
EciI GGCGGA 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 36, 741
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 603, 627
Eco52I CGGCCG 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 2 cut(s) 297, 1053
Eco91I GGTNACC 1 cut(s) 736
EcoICRI GAGCTC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 736
EcoRII CCWGG 3 cut(s) 640, 943, 964
EcoT14I CCWWGG 2 cut(s) 36, 741
EcoT38I GRGCYC 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 1075
EheI GGCGCC 1 cut(s) 1075
ErhI CCWWGG 2 cut(s) 36, 741
FaeI CATG 5 cut(s) 22, 40, 150, 215, 762
FaiI YATR 6 cut(s) 20, 38, 141, 148, 213, 760
FaqI GGGAC 2 cut(s) 101, 249
FatI CATG 5 cut(s) 18, 36, 146, 211, 758
FokI GGATG 1 cut(s) 636
FriOI GRGCYC 1 cut(s) 65
FspBI CTAG 4 cut(s) 261, 695, 972, 1112
GlaI GCGC 1 cut(s) 1075
GsaI CCCAGC 1 cut(s) 566
GsuI CTGGAG 3 cut(s) 624, 927, 948
HaeII RGCGCY 1 cut(s) 1077
HaeIII GGCC 6 cut(s) 47, 348, 449, 858, 873, 1083
HhaI GCGC 1 cut(s) 1076
Hin1I GRCGYC 1 cut(s) 1074
Hin1II CATG 5 cut(s) 22, 40, 150, 215, 762
Hin6I GCGC 1 cut(s) 1074
HinP1I GCGC 1 cut(s) 1074
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 2 cut(s) 755, 807
HphI GGTGA 8 cut(s) 432, 486, 492, 698, 748, 844, 886, 1014
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 2 cut(s) 366, 531
Hpy188III TCNNGA 4 cut(s) 212, 621, 790, 990
Hpy8I GTNNAC 1 cut(s) 385
Hpy99I CGWCG 2 cut(s) 728, 1021
HpyAV CCTTC 7 cut(s) 175, 349, 447, 501, 507, 933, 1028
HpyCH4III ACNGT 3 cut(s) 607, 631, 863
HpyCH4IV ACGT 2 cut(s) 216, 726
HpyCH4V TGCA 8 cut(s) 71, 252, 336, 354, 762, 846, 1043, 1058
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 2 cut(s) 216, 726
Hsp92I GRCGYC 1 cut(s) 1074
Hsp92II CATG 5 cut(s) 22, 40, 150, 215, 762
HspAI GCGC 1 cut(s) 1074
KasI GGCGCC 1 cut(s) 1073
Kpn2I TCCGGA 1 cut(s) 620
KroI GCCGGC 1 cut(s) 899
KroNI GCCGGC 1 cut(s) 901
LmnI GCTCC 7 cut(s) 319, 389, 409, 415, 472, 532, 584
LweI GCATC 1 cut(s) 235
MaeI CTAG 4 cut(s) 261, 695, 972, 1112
MaeII ACGT 2 cut(s) 216, 726
MaeIII GTNAC 6 cut(s) 226, 256, 686, 736, 892, 1020
MbiI CCGCTC 1 cut(s) 204
MboII GAAGA 3 cut(s) 303, 387, 829
MfeI CAATTG 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 65, 592
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 3 cut(s) 368, 598, 832
MluNI TGGCCA 1 cut(s) 348
Mly113I GGCGCC 1 cut(s) 1074
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 1 cut(s) 1022
Mox20I TGGCCA 1 cut(s) 348
MroI TCCGGA 1 cut(s) 620
MroNI GCCGGC 1 cut(s) 899
MroXI GAANNNNTTC 1 cut(s) 836
MscI TGGCCA 1 cut(s) 348
MslI CAYNNNNRTG 4 cut(s) 17, 354, 380, 695
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 3 cut(s) 44, 74, 1079
MspR9I CCNGG 4 cut(s) 123, 642, 945, 966
MunI CAATTG 1 cut(s) 598
MvaI CCWGG 3 cut(s) 642, 945, 966
NaeI GCCGGC 1 cut(s) 901
NarI GGCGCC 1 cut(s) 1074
NciI CCSGG 1 cut(s) 123
NcoI CCATGG 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 899
NlaIII CATG 5 cut(s) 22, 40, 150, 215, 762
NlaIV GGNNCC 8 cut(s) 130, 405, 411, 468, 522, 528, 794, 1075
NmeAIII GCCGAG 2 cut(s) 44, 1050
NmuCI GTSAC 5 cut(s) 226, 686, 736, 892, 1020
NotI GCGGCCGC 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 695
PagI TCATGA 1 cut(s) 211
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 720
PdiI GCCGGC 1 cut(s) 901
PdmI GAANNNNTTC 1 cut(s) 836
PfeI GAWTC 1 cut(s) 807
PleI GAGTC 1 cut(s) 749
PluTI GGCGCC 1 cut(s) 1077
PpsI GAGTC 1 cut(s) 749
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 3 cut(s) 640, 943, 964
PspEI GGTNACC 1 cut(s) 736
PspFI CCCAGC 1 cut(s) 562
PspGI CCWGG 3 cut(s) 640, 943, 964
PspN4I GGNNCC 8 cut(s) 130, 405, 411, 468, 522, 528, 794, 1075
PspPI GGNCC 2 cut(s) 603, 627
PstI CTGCAG 1 cut(s) 73
RsaI GTAC 4 cut(s) 418, 475, 535, 541
RsaNI GTAC 4 cut(s) 417, 474, 534, 540
RseI CAYNNNNRTG 4 cut(s) 17, 354, 380, 695
SacI GAGCTC 1 cut(s) 65
Sau96I GGNCC 2 cut(s) 603, 627
ScaI AGTACT 3 cut(s) 418, 475, 541
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 4 cut(s) 123, 642, 945, 966
SduI GDGCHC 2 cut(s) 65, 592
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 69
SfoI GGCGCC 1 cut(s) 1075
SgrAI CRCCGGYG 1 cut(s) 824
SinI GGWCC 2 cut(s) 603, 627
SmiMI CAYNNNNRTG 4 cut(s) 17, 354, 380, 695
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 3 cut(s) 368, 598, 832
SspDI GGCGCC 1 cut(s) 1073
SspMI CTAG 4 cut(s) 261, 695, 972, 1112
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 4 cut(s) 121, 640, 943, 964
StyI CCWWGG 2 cut(s) 36, 741
TaaI ACNGT 3 cut(s) 607, 631, 863
TaiI ACGT 2 cut(s) 219, 729
TasI AATT 3 cut(s) 368, 598, 832
TatI WGTACW 3 cut(s) 416, 473, 539
TauI GCSGC 5 cut(s) 47, 50, 77, 134, 1079
TfiI GAWTC 1 cut(s) 807
TscAI CASTG 4 cut(s) 361, 738, 866, 958
TseFI GTSAC 5 cut(s) 226, 686, 736, 892, 1020
Tsp45I GTSAC 5 cut(s) 226, 686, 736, 892, 1020
TspDTI ATGAA 1 cut(s) 829
TspGWI ACGGA 3 cut(s) 402, 729, 1005
TspRI CASTG 4 cut(s) 361, 738, 866, 958
VpaK11BI GGWCC 2 cut(s) 603, 627
XapI RAATTY 1 cut(s) 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 836
XspI CTAG 4 cut(s) 261, 695, 972, 1112
ZrmI AGTACT 3 cut(s) 418, 475, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.