Rh2BG034100

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005512
Physical Location & Seq
Reverse (-)
2359570 .. 2361615
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG034100.1

Sequence Viewer

Length: 1053 bp
ATGGCAAGGAACTTGAACATGGCGGTTTTCGCAGCCCTAGTGGCAGCTTTGGTAATTAGCTCTGTCTCAGCAGTCACTCATCAAGTCGGTGATGGTTTGGGCTGGAACATCCCTCCCGGTGGAGCTGTGGCTTACAGTACATGGTCATCAAACAATACCTTTAAAGCCGGCGACATTCTTGTCTTTACATTTACAAGCGGACAACACGACGTCGCAGAAGTGACCAAGGAAGCCTTCGATGCCTGCAATGCAACCGCTCCCATTTCCTTGACGACCAACTCACCAGCAAACCTTACCCTTACTTCTGGAGAGCACTACTACATCTGTACCTTCGGTAGCCACTGTGGCGCCGGACAGAAGTTGGCCGTCAACGTTACCGGAACTACCTCATCCCCTTCTCCGGCTCCCAGCACGAGTCCTCCTACTTCGTCGCCGGTTCCGGTTCTTGCTCCTGAGCCAAGCAGCAGTGCTAGCCCCCCTGCACCTTCTGCCCCAGCACCAAGCCCCTCAGCTGGACCCACCACTTACACTGTCGGAGACACCGCCGGATGGAATGTCATCGGCAACGATACTTACAGCACCTGGGCCTCTAACAAGACCTTCATGGTTGGTGACATTCTAGTGTTCAACTTCTTGAATAGATCACACAACGTGGCTGAGGTGACCAAGACAAATTACGAGTCATGTGGCACCTCCAACACACTCTCTCTCTACTCAAACCCGCCCGTTAGAATCACACTTAACACAACCGGTGAGCACTTCTTCATCTGCACTTTCCCCGACCACTGCAACAACGGCCAGAAGCTCGCTATCACCGTTAAAGGCACCACCACCGCACCGACTTCCGCCCCCGCACCTTCTCCAGGCGGCTCTGCCCCTACTCCAAGCACTACTGCCACTCCACCAAGCACCGGCGCCACCCCACCAAGCGGCACCACCACTCCTTCCACCCCTGCACCCGGCAGTGAATCACCTAGTGCCGCGACATCTCTTGGCGTTGCTGGCCTATCCGTCACCTTCTTGTCCATTGCTGCAGCTTTGTTCATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

350

Amino Acids

35.38

Weight (kDa)

5.53

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 119 2.6e-21 Plastocyanin-like domain
Cu_bind_like PF02298 184 - 267 3.3e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 213
AccB1I GGYRCC 5 cut(s) 347, 689, 824, 914, 932
AccBSI CCGCTC 1 cut(s) 257
AccII CGCG 1 cut(s) 983
AclI AACGTT 1 cut(s) 372
AcoI YGGCCR 2 cut(s) 363, 796
AcyI GRCGYC 3 cut(s) 210, 348, 915
AdeI CACNNNGTG 2 cut(s) 652, 977
AfaI GTAC 2 cut(s) 139, 328
AfiI CCNNNNNNNGG 8 cut(s) 119, 400, 512, 549, 863, 911, 929, 959
AgeI ACCGGT 1 cut(s) 749
AgsI TTSAA 3 cut(s) 16, 628, 637
AjnI CCWGG 2 cut(s) 581, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 6 cut(s) 47, 60, 125, 512, 805, 1037
AluI AGCT 6 cut(s) 47, 60, 125, 512, 805, 1037
Alw21I GWGCWC 2 cut(s) 315, 759
Alw26I GTCTC 2 cut(s) 70, 531
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 4 cut(s) 363, 585, 796, 1003
ApeKI GCWGC 5 cut(s) 32, 44, 462, 1031, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AsiGI ACCGGT 1 cut(s) 749
AspLEI GCGC 2 cut(s) 350, 917
AspS9I GGNCC 2 cut(s) 515, 585
AsuC2I CCSGG 2 cut(s) 117, 960
AsuHPI GGTGA 8 cut(s) 101, 273, 623, 673, 764, 805, 963, 1006
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 1 cut(s) 515
BaeI ACNNNNGTAYC 2 cut(s) 310, 343
BanI GGYRCC 5 cut(s) 347, 689, 824, 914, 932
BauI CACGAG 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 315, 759
BbvCI CCTCAGC 2 cut(s) 508, 657
BbvI GCAGC 5 cut(s) 44, 56, 474, 1018, 1046
BccI CCATC 2 cut(s) 86, 543
BceAI ACGGC 2 cut(s) 350, 811
BciT130I CCWGG 2 cut(s) 583, 864
BcnI CCSGG 2 cut(s) 117, 960
BcoDI GTCTC 2 cut(s) 70, 531
BfaI CTAG 4 cut(s) 38, 471, 620, 975
BfmI CTRYAG 1 cut(s) 1032
BfoI RGCGCY 2 cut(s) 351, 918
BglI GCCNNNNNGGC 2 cut(s) 41, 345
BisI GCNGC 8 cut(s) 33, 45, 463, 868, 931, 981, 1032, 1035
BlsI GCNGC 8 cut(s) 34, 46, 464, 869, 932, 982, 1033, 1036
Bme1390I CCNGG 4 cut(s) 117, 583, 864, 960
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 515, 585
BmiI GGNNCC 8 cut(s) 349, 405, 438, 517, 691, 826, 916, 934
BmrFI CCNGG 4 cut(s) 117, 583, 864, 960
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 474
BpmI CTGGAG 2 cut(s) 327, 846
Bpu10I CCTNAGC 3 cut(s) 453, 508, 657
BpuMI CCSGG 2 cut(s) 117, 960
BsaHI GRCGYC 3 cut(s) 210, 348, 915
BsaJI CCNNGG 2 cut(s) 225, 582
BsaWI WCCGGW 3 cut(s) 377, 439, 749
BsaXI ACNNNNNCTCC 6 cut(s) 403, 433, 883, 913, 925, 955
Bsc4I CCNNNNNNNGG 8 cut(s) 119, 400, 512, 549, 863, 911, 929, 959
Bse118I RCCGGY 4 cut(s) 167, 433, 749, 911
Bse3DI GCAATG 2 cut(s) 253, 1026
BseBI CCWGG 2 cut(s) 583, 864
BseDI CCNNGG 2 cut(s) 225, 582
BseGI GGATG 3 cut(s) 108, 389, 554
BseLI CCNNNNNNNGG 8 cut(s) 119, 400, 512, 549, 863, 911, 929, 959
BseMI GCAATG 2 cut(s) 253, 1026
BseMII CTCAG 4 cut(s) 81, 444, 522, 648
BseXI GCAGC 5 cut(s) 44, 56, 474, 1018, 1046
BseYI CCCAGC 2 cut(s) 407, 493
BsgI GTGCAG 3 cut(s) 465, 754, 939
Bsh1236I CGCG 1 cut(s) 983
BshFI GGCC 4 cut(s) 365, 587, 798, 1005
BshNI GGYRCC 5 cut(s) 347, 689, 824, 914, 932
BshTI ACCGGT 1 cut(s) 749
BsiHKAI GWGCWC 2 cut(s) 315, 759
BslI CCNNNNNNNGG 8 cut(s) 119, 400, 512, 549, 863, 911, 929, 959
BsmAI GTCTC 2 cut(s) 70, 531
BsnI GGCC 4 cut(s) 365, 587, 798, 1005
Bsp1286I GDGCHC 2 cut(s) 315, 759
Bsp143I GATC 1 cut(s) 641
BspANI GGCC 4 cut(s) 365, 587, 798, 1005
BspCNI CTCAG 4 cut(s) 80, 445, 521, 649
BspFNI CGCG 1 cut(s) 983
BspLI GGNNCC 8 cut(s) 349, 405, 438, 517, 691, 826, 916, 934
BspMAI CTGCAG 1 cut(s) 1036
BspOI GCTAGC 1 cut(s) 474
BspT107I GGYRCC 5 cut(s) 347, 689, 824, 914, 932
BsrBI CCGCTC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 253, 1026
BsrFI RCCGGY 4 cut(s) 167, 433, 749, 911
BssAI RCCGGY 4 cut(s) 167, 433, 749, 911
BssECI CCNNGG 2 cut(s) 225, 582
BssMI GATC 1 cut(s) 641
BssNI GRCGYC 3 cut(s) 210, 348, 915
BssSI CACGAG 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 583, 864
Bst4CI ACNGT 4 cut(s) 137, 344, 532, 817
BstACI GRCGYC 3 cut(s) 210, 348, 915
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 5 cut(s) 169, 244, 472, 807, 1003
BstDEI CTNAG 4 cut(s) 67, 453, 508, 657
BstEII GGTNACC 1 cut(s) 661
BstENI CCTNNNNNAGG 1 cut(s) 861
BstF5I GGATG 3 cut(s) 108, 389, 554
BstFNI CGCG 1 cut(s) 983
BstH2I RGCGCY 2 cut(s) 351, 918
BstHHI GCGC 2 cut(s) 350, 917
BstKTI GATC 1 cut(s) 644
BstMAI GTCTC 2 cut(s) 70, 531
BstMBI GATC 1 cut(s) 641
BstMWI GCNNNNNNNGC 9 cut(s) 29, 41, 239, 248, 345, 471, 488, 795, 1002
BstNI CCWGG 2 cut(s) 583, 864
BstPI GGTNACC 1 cut(s) 661
BstSCI CCNGG 4 cut(s) 115, 581, 862, 958
BstSFI CTRYAG 1 cut(s) 1032
BstUI CGCG 1 cut(s) 983
BstV1I GCAGC 5 cut(s) 44, 56, 474, 1018, 1046
BsuRI GGCC 4 cut(s) 365, 587, 798, 1005
BtsCI GGATG 3 cut(s) 108, 389, 554
BtsI GCAGTG 3 cut(s) 472, 784, 970
BtsIMutI CAGTG 5 cut(s) 340, 472, 528, 784, 970
Cac8I GCNNGC 5 cut(s) 169, 244, 472, 807, 1003
CaiI CAGNNNCTG 1 cut(s) 582
CfoI GCGC 2 cut(s) 350, 917
Cfr10I RCCGGY 4 cut(s) 167, 433, 749, 911
Cfr13I GGNCC 2 cut(s) 515, 585
Csp6I GTAC 2 cut(s) 138, 327
CspAI ACCGGT 1 cut(s) 749
CviAII CATG 5 cut(s) 19, 141, 604, 684, 1045
CviQI GTAC 2 cut(s) 138, 327
DdeI CTNAG 4 cut(s) 67, 453, 508, 657
DinI GGCGCC 2 cut(s) 349, 916
DpnI GATC 1 cut(s) 643
DpnII GATC 1 cut(s) 641
DraI TTTAAA 1 cut(s) 163
DraIII CACNNNGTG 2 cut(s) 652, 977
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 363, 796
EciI GGCGGA 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 515
Eco91I GGTNACC 1 cut(s) 661
EcoNI CCTNNNNNAGG 1 cut(s) 861
EcoO65I GGTNACC 1 cut(s) 661
EcoRII CCWGG 2 cut(s) 581, 862
EcoT14I CCWWGG 1 cut(s) 225
EgeI GGCGCC 2 cut(s) 349, 916
EheI GGCGCC 2 cut(s) 349, 916
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 5 cut(s) 22, 144, 607, 687, 1048
FaiI YATR 5 cut(s) 20, 142, 605, 685, 1046
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 5 cut(s) 18, 140, 603, 683, 1044
FauI CCCGC 2 cut(s) 729, 859
Fnu4HI GCNGC 8 cut(s) 33, 45, 463, 868, 931, 981, 1032, 1035
FokI GGATG 3 cut(s) 95, 376, 561
Fsp4HI GCNGC 8 cut(s) 33, 45, 463, 868, 931, 981, 1032, 1035
FspBI CTAG 4 cut(s) 38, 471, 620, 975
GlaI GCGC 2 cut(s) 349, 916
GluI GCNGC 8 cut(s) 33, 45, 463, 868, 931, 981, 1032, 1035
GsaI CCCAGC 2 cut(s) 411, 497
GsuI CTGGAG 2 cut(s) 327, 846
HaeII RGCGCY 2 cut(s) 351, 918
HaeIII GGCC 4 cut(s) 365, 587, 798, 1005
HhaI GCGC 2 cut(s) 350, 917
Hin1I GRCGYC 3 cut(s) 210, 348, 915
Hin1II CATG 5 cut(s) 22, 144, 607, 687, 1048
Hin6I GCGC 2 cut(s) 348, 915
HinP1I GCGC 2 cut(s) 348, 915
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 4 cut(s) 415, 680, 732, 968
HphI GGTGA 8 cut(s) 101, 273, 623, 673, 764, 805, 963, 1006
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 536
Hpy188III TCNNGA 3 cut(s) 306, 452, 634
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 3 cut(s) 212, 215, 433
HpyAV CCTTC 8 cut(s) 244, 340, 405, 495, 610, 867, 954, 1027
HpyCH4III ACNGT 4 cut(s) 137, 344, 532, 817
HpyCH4IV ACGT 3 cut(s) 210, 372, 651
HpyCH4V TGCA 7 cut(s) 246, 251, 482, 771, 789, 956, 1034
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 41, 239, 248, 345, 471, 488, 795, 1002
HpyF3I CTNAG 4 cut(s) 67, 453, 508, 657
HpySE526I ACGT 3 cut(s) 210, 372, 651
Hsp92I GRCGYC 3 cut(s) 210, 348, 915
Hsp92II CATG 5 cut(s) 22, 144, 607, 687, 1048
HspAI GCGC 2 cut(s) 348, 915
KasI GGCGCC 2 cut(s) 347, 914
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 641
LmnI GCTCC 4 cut(s) 122, 262, 409, 454
Lsp1109I GCAGC 5 cut(s) 44, 56, 474, 1018, 1046
LweI GCATC 1 cut(s) 229
MaeI CTAG 4 cut(s) 38, 471, 620, 975
MaeII ACGT 3 cut(s) 210, 372, 651
MaeIII GTNAC 6 cut(s) 73, 220, 373, 611, 661, 1012
MalI GATC 1 cut(s) 643
MbiI CCGCTC 1 cut(s) 257
MboI GATC 1 cut(s) 641
MboII GAAGA 1 cut(s) 754
MhlI GDGCHC 2 cut(s) 315, 759
MluCI AATT 2 cut(s) 54, 673
Mly113I GGCGCC 2 cut(s) 348, 915
MlyI GAGTC 2 cut(s) 424, 689
MmeI TCCRAC 2 cut(s) 514, 720
MnlI CCTC 7 cut(s) 123, 397, 429, 517, 598, 652, 703
MroNI GCCGGC 1 cut(s) 167
MseI TTAA 4 cut(s) 162, 741, 819, 1051
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 512
MspR9I CCNGG 4 cut(s) 117, 583, 864, 960
MvaI CCWGG 2 cut(s) 583, 864
MvnI CGCG 1 cut(s) 983
MwoI GCNNNNNNNGC 9 cut(s) 29, 41, 239, 248, 345, 471, 488, 795, 1002
NaeI GCCGGC 1 cut(s) 169
NarI GGCGCC 2 cut(s) 348, 915
NciI CCSGG 2 cut(s) 117, 960
NdeII GATC 1 cut(s) 641
NgoMIV GCCGGC 1 cut(s) 167
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 5 cut(s) 22, 144, 607, 687, 1048
NlaIV GGNNCC 8 cut(s) 349, 405, 438, 517, 691, 826, 916, 934
NmuCI GTSAC 5 cut(s) 73, 220, 611, 661, 1012
PcsI WCGNNNNNNNCGW 1 cut(s) 813
PdiI GCCGGC 1 cut(s) 169
PfeI GAWTC 2 cut(s) 732, 968
PinAI ACCGGT 1 cut(s) 749
PkrI GCNGC 8 cut(s) 34, 46, 464, 869, 932, 982, 1033, 1036
PleI GAGTC 2 cut(s) 423, 688
PluTI GGCGCC 2 cut(s) 351, 918
PpsI GAGTC 2 cut(s) 423, 688
Psp1406I AACGTT 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 581, 862
PspEI GGTNACC 1 cut(s) 661
PspFI CCCAGC 2 cut(s) 407, 493
PspGI CCWGG 2 cut(s) 581, 862
PspN4I GGNNCC 8 cut(s) 349, 405, 438, 517, 691, 826, 916, 934
PspPI GGNCC 2 cut(s) 515, 585
PstI CTGCAG 1 cut(s) 1036
PstNI CAGNNNCTG 1 cut(s) 582
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 139, 328
RsaNI GTAC 2 cut(s) 138, 327
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 4 cut(s) 162, 741, 819, 1051
SatI GCNGC 8 cut(s) 33, 45, 463, 868, 931, 981, 1032, 1035
Sau3AI GATC 1 cut(s) 641
Sau96I GGNCC 2 cut(s) 515, 585
SchI GAGTC 2 cut(s) 424, 689
ScrFI CCNGG 4 cut(s) 117, 583, 864, 960
SduI GDGCHC 2 cut(s) 315, 759
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 1032
SfoI GGCGCC 2 cut(s) 349, 916
SgrAI CRCCGGYG 1 cut(s) 911
SinI GGWCC 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 620
Sse9I AATT 2 cut(s) 54, 673
SspDI GGCGCC 2 cut(s) 347, 914
SspMI CTAG 4 cut(s) 38, 471, 620, 975
StyD4I CCNGG 4 cut(s) 115, 581, 862, 958
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 4 cut(s) 137, 344, 532, 817
TaiI ACGT 3 cut(s) 213, 375, 654
TaqI TCGA 1 cut(s) 237
TasI AATT 2 cut(s) 54, 673
TatI WGTACW 1 cut(s) 137
TauI GCSGC 3 cut(s) 870, 933, 983
TfiI GAWTC 2 cut(s) 732, 968
Tru1I TTAA 4 cut(s) 162, 741, 819, 1051
Tru9I TTAA 4 cut(s) 162, 741, 819, 1051
TscAI CASTG 5 cut(s) 347, 472, 535, 791, 970
TseFI GTSAC 5 cut(s) 73, 220, 611, 661, 1012
TseI GCWGC 5 cut(s) 32, 44, 462, 1031, 1034
Tsp45I GTSAC 5 cut(s) 73, 220, 611, 661, 1012
TspDTI ATGAA 3 cut(s) 592, 754, 1033
TspGWI ACGGA 1 cut(s) 1000
TspRI CASTG 5 cut(s) 347, 472, 535, 791, 970
VpaK11BI GGWCC 1 cut(s) 515
XagI CCTNNNNNAGG 1 cut(s) 861
XspI CTAG 4 cut(s) 38, 471, 620, 975
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.