pycom15g15180

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0005512
Physical Location & Seq
Reverse (-)
10537718 .. 10539503
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15180.3

Sequence Viewer

Length: 1125 bp
ATGGCAAGGAACACAAACATGGCGTTTTTCGCAGCCGTGGCGGCGGCCGCTTTGCTGATGAGCTTAGCGGCAGCGGCAACTACTTACCAAGTGGGTGATGGGTTGGGTTGGTCCGTCCCTCCTGGTGGCGCCGCAGCTTACACTACATGGGCTGACAATAAAACCTTCACTGTCGGCGACACTCTTGTATTCACATTCAGCAGCGGAAATCACGACGTGGCGGAAGTGACAAAGGCAGCTTTTGATGCTTGCAATGCAACTAGTCCCATTACTTTGGAGACTGCCAGCCCTACAAATATCACGCTTAGCTCTTCAGGGGAGCATTACTATATCTGCACCTTCTCTGGCCATTGCAGTGCCGGTCAGAAATTGTCTATCAGTGTGACCGGAGCTTCTTCTCCTGCTCCGGCTCCAAGGACTAGTCGTCCCCCTTCGCCTTCACCACCGGCCTCTGTTCCGGCACCAGCTCCGAGTACTAGTTCTCCTCCTCCTTCACCACCGGCCTCTGTTCCCACACCAGCTCCGAGTACTAGTACTCCTACCCCCGCTGCTTCCCCAGCACCAACACCAAGCTCCTCACGAGCACCTGTCACTTGGACCGTTGGCAACAACAGCGGATGGACCGTCCTCCCTCCGGGCTCTTACCAAACTTGGGCTGCTAACAAAACCTTTGTGGTTGGTGACACTCTAGTGTTCAACTATTTGAACGGAACACACGACGTGGCGGTAGTGACCAAGGCAAATTACGACTCATGCAACACCAGCAGCACCCTCGCCCTGTCCACTAACCCACCAACGAGAATCACTCTCAACTCCACCGGCGAGAATTTCTTCATCTGCACTTTCACGGGCCACTGTGCCGGAGGCCAGAAGCTTGCCATCAATGTCACCTCCGGCAGTACCGCCGCCACGCCACCTTCCTCCACGGCCACTCCTCCAAGCAGCGGTGCCACCCCTCCAGGCTCTACTGCCAATCCTCCACCTGGAAGTCCAACCAGCCCAAATACTCCTTCGTCACCGACACCCGAAGGTTCTGCACCACCACCACCAAATGCAGCAGCTTCTCTCGGCGCCGCTGGGCTTTCCGCTACCTTTTTGTCCATTGCTTTGGCTTTGTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

375

Amino Acids

37.18

Weight (kDa)

6.16

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 128, 460, 947, 1070
AcoI YGGCCR 3 cut(s) 45, 346, 927
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 2 cut(s) 129, 1071
AdeI CACNNNGTG 2 cut(s) 217, 721
AfaI GTAC 4 cut(s) 475, 529, 535, 901
AfiI CCNNNNNNNGG 5 cut(s) 125, 634, 652, 944, 983
AgsI TTSAA 2 cut(s) 697, 706
AhdI GACNNNNNGTC 1 cut(s) 423
AhlI ACTAGT 4 cut(s) 260, 419, 476, 530
AjiI CACGTC 2 cut(s) 217, 721
AjnI CCWGG 3 cut(s) 121, 958, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 994, 1026
AleI CACNNNNGTG 1 cut(s) 689
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 7 cut(s) 45, 346, 447, 501, 850, 865, 927
ApoI RAATTY 1 cut(s) 826
Asp700I GAANNNNTTC 1 cut(s) 830
AspLEI GCGC 2 cut(s) 131, 1073
AspS9I GGNCC 4 cut(s) 111, 597, 621, 850
AsuC2I CCSGG 1 cut(s) 636
AsuHPI GGTGA 6 cut(s) 107, 432, 486, 692, 880, 1008
AvaII GGWCC 3 cut(s) 111, 597, 621
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 4 cut(s) 128, 460, 947, 1070
BanII GRGCYC 1 cut(s) 641
BauI CACGAG 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 586
BccI CCATC 3 cut(s) 92, 612, 887
BceAI ACGGC 2 cut(s) 20, 942
BcgI CGANNNNNNTGC 4 cut(s) 754, 788, 1016, 1050
BciT130I CCWGG 3 cut(s) 123, 960, 984
BcnI CCSGG 1 cut(s) 636
BcoDI GTCTC 1 cut(s) 272
BcuI ACTAGT 4 cut(s) 260, 419, 476, 530
BfaI CTAG 5 cut(s) 261, 420, 477, 531, 689
BfoI RGCGCY 2 cut(s) 132, 1074
BglI GCCNNNNNGGC 1 cut(s) 41
BlpI GCTNAGC 2 cut(s) 64, 305
BmcAI AGTACT 3 cut(s) 475, 529, 535
Bme1390I CCNGG 4 cut(s) 123, 636, 960, 984
Bme18I GGWCC 3 cut(s) 111, 597, 621
BmeRI GACNNNNNGTC 1 cut(s) 423
BmgBI CACGTC 2 cut(s) 217, 721
BmgT120I GGNCC 4 cut(s) 111, 597, 621, 850
BmiI GGNNCC 5 cut(s) 130, 411, 462, 949, 1072
BmrFI CCNGG 4 cut(s) 123, 636, 960, 984
BmsI GCATC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 790, 822
BpmI CTGGAG 1 cut(s) 942
Bpu1102I GCTNAGC 2 cut(s) 64, 305
BpuMI CCSGG 1 cut(s) 636
BsaHI GRCGYC 2 cut(s) 129, 1071
BsaJI CCNNGG 4 cut(s) 36, 413, 735, 924
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 8 cut(s) 466, 496, 505, 520, 535, 550, 916, 946
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 634, 652, 944, 983
Bse118I RCCGGY 4 cut(s) 359, 445, 499, 818
Bse3DI GCAATG 3 cut(s) 259, 349, 1101
BseBI CCWGG 3 cut(s) 123, 960, 984
BseDI CCNNGG 4 cut(s) 36, 413, 735, 924
BseGI GGATG 1 cut(s) 623
BseLI CCNNNNNNNGG 5 cut(s) 125, 634, 652, 944, 983
BseMI GCAATG 3 cut(s) 259, 349, 1101
BseRI GAGGAG 4 cut(s) 474, 477, 565, 924
BseX3I CGGCCG 1 cut(s) 45
BseYI CCCAGC 2 cut(s) 556, 1076
BsgI GTGCAG 3 cut(s) 319, 823, 1020
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 7 cut(s) 47, 348, 449, 503, 852, 867, 929
BshNI GGYRCC 4 cut(s) 128, 460, 947, 1070
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 586
BslFI GGGAC 3 cut(s) 101, 249, 411
BslI CCNNNNNNNGG 5 cut(s) 125, 634, 652, 944, 983
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 3 cut(s) 101, 249, 411
BsnI GGCC 7 cut(s) 47, 348, 449, 503, 852, 867, 929
Bsp1286I GDGCHC 2 cut(s) 586, 641
Bsp1720I GCTNAGC 2 cut(s) 64, 305
BspANI GGCC 7 cut(s) 47, 348, 449, 503, 852, 867, 929
BspLI GGNNCC 5 cut(s) 130, 411, 462, 949, 1072
BspQI GCTCTTC 1 cut(s) 316
BspT107I GGYRCC 4 cut(s) 128, 460, 947, 1070
BsrDI GCAATG 3 cut(s) 259, 349, 1101
BsrFI RCCGGY 4 cut(s) 359, 445, 499, 818
BssAI RCCGGY 4 cut(s) 359, 445, 499, 818
BssECI CCNNGG 4 cut(s) 36, 413, 735, 924
BssNI GRCGYC 2 cut(s) 129, 1071
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 2 cut(s) 413, 735
Bst2BI CACGAG 1 cut(s) 579
Bst2UI CCWGG 3 cut(s) 123, 960, 984
Bst4CI ACNGT 4 cut(s) 172, 601, 625, 857
Bst6I CTCTTC 1 cut(s) 316
BstACI GRCGYC 2 cut(s) 129, 1071
BstC8I GCNNGC 3 cut(s) 250, 286, 876
BstDEI CTNAG 2 cut(s) 64, 305
BstDSI CCRYGG 2 cut(s) 36, 924
BstF5I GGATG 1 cut(s) 623
BstH2I RGCGCY 2 cut(s) 132, 1074
BstHHI GCGC 2 cut(s) 131, 1073
BstMAI GTCTC 1 cut(s) 272
BstMCI CGRYCG 1 cut(s) 48
BstNI CCWGG 3 cut(s) 123, 960, 984
BstSCI CCNGG 4 cut(s) 121, 634, 958, 982
BstXI CCANNNNNNTGG 2 cut(s) 274, 1108
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 7 cut(s) 47, 348, 449, 503, 852, 867, 929
BtgI CCRYGG 2 cut(s) 36, 924
BtrI CACGTC 2 cut(s) 217, 721
BtsCI GGATG 1 cut(s) 623
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 4 cut(s) 168, 361, 385, 853
Cac8I GCNNGC 3 cut(s) 250, 286, 876
CciNI GCGGCCGC 1 cut(s) 45
CfoI GCGC 2 cut(s) 131, 1073
Cfr10I RCCGGY 4 cut(s) 359, 445, 499, 818
Cfr13I GGNCC 4 cut(s) 111, 597, 621, 850
Csp6I GTAC 4 cut(s) 474, 528, 534, 900
CviAII CATG 3 cut(s) 19, 147, 753
CviQI GTAC 4 cut(s) 474, 528, 534, 900
DdeI CTNAG 2 cut(s) 64, 305
DinI GGCGCC 2 cut(s) 130, 1072
DraIII CACNNNGTG 2 cut(s) 217, 721
DriI GACNNNNNGTC 1 cut(s) 423
EaeI YGGCCR 3 cut(s) 45, 346, 927
EagI CGGCCG 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 316
Eam1105I GACNNNNNGTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 316
EciI GGCGGA 1 cut(s) 236
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 413, 735
Eco24I GRGCYC 1 cut(s) 641
Eco47I GGWCC 3 cut(s) 111, 597, 621
Eco52I CGGCCG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 297
EcoRII CCWGG 3 cut(s) 121, 958, 982
EcoT14I CCWWGG 2 cut(s) 413, 735
EcoT38I GRGCYC 1 cut(s) 641
EgeI GGCGCC 2 cut(s) 130, 1072
EheI GGCGCC 2 cut(s) 130, 1072
ErhI CCWWGG 2 cut(s) 413, 735
FaeI CATG 3 cut(s) 22, 150, 756
FaiI YATR 4 cut(s) 20, 148, 330, 754
FaqI GGGAC 3 cut(s) 101, 249, 411
FatI CATG 3 cut(s) 18, 146, 752
FauI CCCGC 1 cut(s) 553
FokI GGATG 1 cut(s) 630
FriOI GRGCYC 1 cut(s) 641
FspBI CTAG 5 cut(s) 261, 420, 477, 531, 689
GlaI GCGC 2 cut(s) 130, 1072
GsaI CCCAGC 2 cut(s) 560, 1080
GsuI CTGGAG 1 cut(s) 942
HaeII RGCGCY 2 cut(s) 132, 1074
HaeIII GGCC 7 cut(s) 47, 348, 449, 503, 852, 867, 929
HhaI GCGC 2 cut(s) 131, 1073
Hin1I GRCGYC 2 cut(s) 129, 1071
Hin1II CATG 3 cut(s) 22, 150, 756
Hin6I GCGC 2 cut(s) 129, 1071
HinP1I GCGC 2 cut(s) 129, 1071
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 2 cut(s) 749, 801
HphI GGTGA 6 cut(s) 107, 432, 486, 692, 880, 1008
Hpy166II GTNNAC 1 cut(s) 783
Hpy188I TCNGA 3 cut(s) 366, 471, 525
Hpy188III TCNNGA 2 cut(s) 212, 579
Hpy8I GTNNAC 1 cut(s) 783
Hpy99I CGWCG 2 cut(s) 218, 722
HpyAV CCTTC 8 cut(s) 175, 349, 441, 447, 501, 927, 1020, 1022
HpyCH4III ACNGT 4 cut(s) 172, 601, 625, 857
HpyCH4IV ACGT 2 cut(s) 216, 720
HpyCH4V TGCA 8 cut(s) 252, 257, 336, 354, 756, 840, 1037, 1055
HpyF3I CTNAG 2 cut(s) 64, 305
HpySE526I ACGT 2 cut(s) 216, 720
Hsp92I GRCGYC 2 cut(s) 129, 1071
Hsp92II CATG 3 cut(s) 22, 150, 756
HspAI GCGC 2 cut(s) 129, 1071
KasI GGCGCC 2 cut(s) 128, 1070
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 7 cut(s) 319, 389, 409, 415, 472, 526, 578
LweI GCATC 1 cut(s) 235
MaeI CTAG 5 cut(s) 261, 420, 477, 531, 689
MaeII ACGT 2 cut(s) 216, 720
MaeIII GTNAC 7 cut(s) 226, 382, 589, 680, 730, 886, 1014
MboII GAAGA 3 cut(s) 303, 387, 823
MhlI GDGCHC 2 cut(s) 586, 641
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 3 cut(s) 368, 742, 826
MluNI TGGCCA 1 cut(s) 348
Mly113I GGCGCC 2 cut(s) 129, 1071
MlyI GAGTC 1 cut(s) 743
MmeI TCCRAC 1 cut(s) 1016
Mox20I TGGCCA 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 830
MscI TGGCCA 1 cut(s) 348
MslI CAYNNNNRTG 3 cut(s) 17, 354, 689
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 6 cut(s) 74, 204, 548, 615, 945, 1076
MspR9I CCNGG 4 cut(s) 123, 636, 960, 984
MvaI CCWGG 3 cut(s) 123, 960, 984
NarI GGCGCC 2 cut(s) 129, 1071
NciI CCSGG 1 cut(s) 636
NlaIII CATG 3 cut(s) 22, 150, 756
NlaIV GGNNCC 5 cut(s) 130, 411, 462, 949, 1072
NmeAIII GCCGAG 1 cut(s) 1047
NmuCI GTSAC 7 cut(s) 226, 382, 589, 680, 730, 886, 1014
NotI GCGGCCGC 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 689
PciSI GCTCTTC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 714
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 1 cut(s) 801
PleI GAGTC 1 cut(s) 743
PluTI GGCGCC 2 cut(s) 132, 1074
PpsI GAGTC 1 cut(s) 743
Psp6I CCWGG 3 cut(s) 121, 958, 982
PspFI CCCAGC 2 cut(s) 556, 1076
PspGI CCWGG 3 cut(s) 121, 958, 982
PspN4I GGNNCC 5 cut(s) 130, 411, 462, 949, 1072
PspPI GGNCC 4 cut(s) 111, 597, 621, 850
RsaI GTAC 4 cut(s) 475, 529, 535, 901
RsaNI GTAC 4 cut(s) 474, 528, 534, 900
RseI CAYNNNNRTG 3 cut(s) 17, 354, 689
SapI GCTCTTC 1 cut(s) 316
Sau96I GGNCC 4 cut(s) 111, 597, 621, 850
ScaI AGTACT 3 cut(s) 475, 529, 535
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 4 cut(s) 123, 636, 960, 984
SduI GDGCHC 2 cut(s) 586, 641
SfaNI GCATC 1 cut(s) 235
SfoI GGCGCC 2 cut(s) 130, 1072
SgrAI CRCCGGYG 1 cut(s) 818
SinI GGWCC 3 cut(s) 111, 597, 621
SmiMI CAYNNNNRTG 3 cut(s) 17, 354, 689
SpeI ACTAGT 4 cut(s) 260, 419, 476, 530
Sse9I AATT 3 cut(s) 368, 742, 826
SspDI GGCGCC 2 cut(s) 128, 1070
SspMI CTAG 5 cut(s) 261, 420, 477, 531, 689
StyD4I CCNGG 4 cut(s) 121, 634, 958, 982
StyI CCWWGG 2 cut(s) 413, 735
TaaI ACNGT 4 cut(s) 172, 601, 625, 857
TaiI ACGT 2 cut(s) 219, 723
TasI AATT 3 cut(s) 368, 742, 826
TatI WGTACW 3 cut(s) 473, 527, 533
TauI GCSGC 8 cut(s) 44, 47, 50, 71, 77, 134, 908, 1076
TfiI GAWTC 1 cut(s) 801
TscAI CASTG 4 cut(s) 175, 361, 385, 860
TseFI GTSAC 7 cut(s) 226, 382, 589, 680, 730, 886, 1014
Tsp45I GTSAC 7 cut(s) 226, 382, 589, 680, 730, 886, 1014
TspDTI ATGAA 1 cut(s) 823
TspGWI ACGGA 2 cut(s) 103, 723
TspRI CASTG 4 cut(s) 175, 361, 385, 860
VpaK11BI GGWCC 3 cut(s) 111, 597, 621
XapI RAATTY 1 cut(s) 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 5 cut(s) 261, 420, 477, 531, 689
ZrmI AGTACT 3 cut(s) 475, 529, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.