Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005512

Physical Location & Seq

Genomic Coordinates Reverse (-)

2600237 .. 2602418

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGTAGTGAACTCAAATATTTCGCCGTTCTAGCCATAACAGTGGCTGCCCTCCTTCACTCCACAGCAGCAATAGAAACCCACGTCGTTGGAGATGAATTCGGATGGATTGTTCCTCCCGGAGGTCATTACGCTTACGAAGCCTGGGCTTCCGGGCACAAATTCTCCGTCGGCGACATTCTTGAGTTCAACTTCACGACTGGTGACCAGGACGTAGCCATGGTTACAAAGGAAGCTTTCGATAGCTGCAATTCCACAAGCCCCATCGAGCTTAAAACAACTGGTCCGGCCAATTTCACATTGGATAGGATTGGGTCGTACTATTTCATTGGAACCATGGACAAGCACTGCGGGTTGGGACAGAAGCTAGCCATCAACGTGACTGCTCATTCTGGATCACCAACTCCAAGCCCTTCACCTAAACCTAGTCCTACACCAAGAGGCCCTGTGACTTACGTCGTCGGCGATCATTTTGGATGGATTGTCCCACCGGGCGGTGAACTTGCTTATTCTGCTTGGGCTTACGGCAAGACTTTCTATGTTGGTGACACTCTAGAGTTCAACTTCACAACCGGAGATCAAGATGTAGCCATGGTCACAAAACAAGCTTACGAAAGCTGCAATTTTAATAAATCCCAGATCATAATATTAACAACTGGACCGGCCTATATCAAGCTGAATCTCACAGGCGAGTATTACTTCATTGGCACCATGGATAAGCACTGCGAATTGGGACAAAAGCTAGCCATCAACGTGACTGCAAATCCTGGTGGCCCTTCAGCCTCCCCTACTCCTGCTCCTGCTCCTTCTCCTAGAGGTCCAGCGATTTACATCGTCGGCGATCAATTGGGTTGGTTTGTGCCCGGTAAATATGATTATTCTGCTTGGGCAAACGGCAAAACTTTTATCGTTGGAGACACGCTAGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

310

Amino Acids

33.15

Weight (kDa)

5.29

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	44 - 121	8.4e-20	Plastocyanin-like domain
Cu_bind_like	PF02298	168 - 246	2.3e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02890 FvH4_1g02900
malus_domestica	MD02G1028700.v1.1 MD02G1028800.v1.1 MD15G1170300.v1.1 MD15G1170400.v1.1
prunus_persica	Prupe.7G246200_v2.0.a1
pyrus_communis	pycom02g02340 pycom02g02350 pycom15g15180 pycom15g15190
rosa_chinensis	RchiOBHm_Chr2g0088011 RchiOBHm_Chr2g0088031
rosa_laevigata	RLG00000015918
rosa_multiflora	Rmu_sc0003275.1_g000008 Rmu_sc0003275.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153050 Rroxscaffold_2G00153060
rosa_rugosa	Rorug01G0480300 Rorug01G0480400
rosa_samantha	Rh2AG035100 Rh2AG035200 Rh2BG034100 Rh2BG034200 Rh2CG035100 Rh2CG035300 Rh2DG034800
rosa_wichuraiana	Rw2G002760 Rw2G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	707
AciI	CCGC	2 cut(s)	351, 495
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	98, 161
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	122, 494
AgsI	TTSAA	2 cut(s)	190, 562
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	3 cut(s)	143, 207, 766
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	8 cut(s)	236, 246, 271, 367, 608, 618, 676, 742
AluI	AGCT	8 cut(s)	236, 246, 271, 367, 608, 618, 676, 742
Alw26I	GTCTC	1 cut(s)	909
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	4 cut(s)	288, 442, 663, 772
ApeKI	GCWGC	4 cut(s)	47, 68, 246, 618
ApoI	RAATTY	2 cut(s)	98, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspS9I	GGNCC	5 cut(s)	284, 443, 659, 773, 818
AsuC2I	CCSGG	4 cut(s)	120, 154, 492, 864
AsuHPI	GGTGA	5 cut(s)	215, 390, 408, 509, 557
AsuNHI	GCTAGC	2 cut(s)	367, 742
AvaII	GGWCC	3 cut(s)	284, 659, 818
BaeGI	GKGCMC	2 cut(s)	159, 864
BanI	GGYRCC	1 cut(s)	707
BbvI	GCAGC	4 cut(s)	34, 80, 233, 605
BccI	CCATC	5 cut(s)	99, 272, 380, 471, 755
BceAI	ACGGC	3 cut(s)	11, 541, 910
BciT130I	CCWGG	3 cut(s)	145, 209, 768
BcnI	CCSGG	4 cut(s)	120, 154, 492, 864
BcoDI	GTCTC	1 cut(s)	909
BfaI	CTAG	7 cut(s)	32, 368, 426, 554, 743, 813, 923
BisI	GCNGC	4 cut(s)	48, 69, 247, 619
BlsI	GCNGC	4 cut(s)	49, 70, 248, 620
Bme1390I	CCNGG	7 cut(s)	120, 145, 154, 209, 492, 768, 864
Bme18I	GGWCC	3 cut(s)	284, 659, 818
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	5 cut(s)	284, 443, 659, 773, 818
BmiI	GGNNCC	2 cut(s)	334, 709
BmrFI	CCNGG	7 cut(s)	120, 145, 154, 209, 492, 768, 864
BmtI	GCTAGC	2 cut(s)	371, 746
BoxI	GACNNNNGTC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	4 cut(s)	120, 154, 492, 864
BsaBI	GATNNNNATC	1 cut(s)	830
BsaJI	CCNNGG	5 cut(s)	144, 219, 336, 591, 711
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 781, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 494
Bse118I	RCCGGY	1 cut(s)	661
Bse1I	ACTGG	3 cut(s)	205, 286, 661
Bse8I	GATNNNNATC	1 cut(s)	830
BseBI	CCWGG	3 cut(s)	145, 209, 768
BseDI	CCNNGG	5 cut(s)	144, 219, 336, 591, 711
BseGI	GGATG	2 cut(s)	110, 482
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	2 cut(s)	122, 494
BseNI	ACTGG	3 cut(s)	205, 286, 661
BseSI	GKGCMC	2 cut(s)	159, 864
BseXI	GCAGC	4 cut(s)	34, 80, 233, 605
BshFI	GGCC	4 cut(s)	290, 444, 665, 774
BshNI	GGYRCC	1 cut(s)	707
BsiSI	CCGG	7 cut(s)	120, 153, 287, 491, 573, 662, 864
BslFI	GGGAC	3 cut(s)	372, 470, 747
BslI	CCNNNNNNNGG	2 cut(s)	122, 494
BsmAI	GTCTC	1 cut(s)	909
BsmFI	GGGAC	3 cut(s)	372, 470, 747
BsnI	GGCC	4 cut(s)	290, 444, 665, 774
Bsp1286I	GDGCHC	2 cut(s)	159, 864
Bsp143I	GATC	5 cut(s)	395, 466, 577, 639, 841
Bsp19I	CCATGG	4 cut(s)	219, 336, 591, 711
BspACI	CCGC	2 cut(s)	351, 495
BspANI	GGCC	4 cut(s)	290, 444, 665, 774
BspLI	GGNNCC	2 cut(s)	334, 709
BspOI	GCTAGC	2 cut(s)	371, 746
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	661
BsrI	ACTGG	3 cut(s)	205, 286, 661
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	5 cut(s)	144, 219, 336, 591, 711
BssMI	GATC	5 cut(s)	395, 466, 577, 639, 841
BssT1I	CCWWGG	4 cut(s)	219, 336, 591, 711
Bst2UI	CCWGG	3 cut(s)	145, 209, 768
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	369, 744
BstDSI	CCRYGG	4 cut(s)	219, 336, 591, 711
BstEII	GGTNACC	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	110, 482
BstKTI	GATC	5 cut(s)	398, 469, 580, 642, 844
BstMAI	GTCTC	1 cut(s)	909
BstMBI	GATC	5 cut(s)	395, 466, 577, 639, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 140, 512
BstNI	CCWGG	3 cut(s)	145, 209, 768
BstPAI	GACNNNNGTC	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	7 cut(s)	118, 143, 152, 207, 490, 766, 862
BstSLI	GKGCMC	2 cut(s)	159, 864
BstV1I	GCAGC	4 cut(s)	34, 80, 233, 605
BstXI	CCANNNNNNTGG	2 cut(s)	43, 89
BsuRI	GGCC	4 cut(s)	290, 444, 665, 774
BtgI	CCRYGG	4 cut(s)	219, 336, 591, 711
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	110, 482
BtsI	GCAGTG	2 cut(s)	346, 721
BtsIMutI	CAGTG	3 cut(s)	48, 346, 721
Cac8I	GCNNGC	2 cut(s)	369, 744
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	661
Cfr13I	GGNCC	5 cut(s)	284, 443, 659, 773, 818
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	4 cut(s)	220, 337, 592, 712
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	5 cut(s)	397, 468, 579, 641, 843
DpnII	GATC	5 cut(s)	395, 466, 577, 639, 841
EaeI	YGGCCR	1 cut(s)	288
Eco130I	CCWWGG	4 cut(s)	219, 336, 591, 711
Eco47I	GGWCC	3 cut(s)	284, 659, 818
Eco57I	CTGAAG	1 cut(s)	762
Eco91I	GGTNACC	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	443
EcoO65I	GGTNACC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	143, 207, 766
EcoT14I	CCWWGG	4 cut(s)	219, 336, 591, 711
ErhI	CCWWGG	4 cut(s)	219, 336, 591, 711
FaeI	CATG	4 cut(s)	223, 340, 595, 715
FaiI	YATR	9 cut(s)	38, 221, 338, 540, 593, 644, 669, 713, 873
FaqI	GGGAC	3 cut(s)	372, 470, 747
FatI	CATG	4 cut(s)	219, 336, 591, 711
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	4 cut(s)	48, 69, 247, 619
FokI	GGATG	2 cut(s)	117, 489
Fsp4HI	GCNGC	4 cut(s)	48, 69, 247, 619
FspBI	CTAG	7 cut(s)	32, 368, 426, 554, 743, 813, 923
GluI	GCNGC	4 cut(s)	48, 69, 247, 619
HaeIII	GGCC	4 cut(s)	290, 444, 665, 774
HapII	CCGG	7 cut(s)	120, 153, 287, 491, 573, 662, 864
Hin1II	CATG	4 cut(s)	223, 340, 595, 715
HindIII	AAGCTT	2 cut(s)	234, 606
HinfI	GANTC	1 cut(s)	679
HpaII	CCGG	7 cut(s)	120, 153, 287, 491, 573, 662, 864
HphI	GGTGA	5 cut(s)	215, 390, 408, 509, 557
Hpy166II	GTNNAC	2 cut(s)	11, 500
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	5 cut(s)	182, 196, 393, 554, 581
Hpy8I	GTNNAC	2 cut(s)	11, 500
Hpy99I	CGWCG	5 cut(s)	89, 173, 461, 464, 839
HpyAV	CCTTC	4 cut(s)	65, 423, 786, 816
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	5 cut(s)	84, 213, 378, 456, 753
HpyCH4V	TGCA	3 cut(s)	249, 621, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 140, 512
HpySE526I	ACGT	5 cut(s)	84, 213, 378, 456, 753
Hsp92II	CATG	4 cut(s)	223, 340, 595, 715
Kzo9I	GATC	5 cut(s)	395, 466, 577, 639, 841
LmnI	GCTCC	2 cut(s)	802, 808
Lsp1109I	GCAGC	4 cut(s)	34, 80, 233, 605
MaeI	CTAG	7 cut(s)	32, 368, 426, 554, 743, 813, 923
MaeII	ACGT	5 cut(s)	84, 213, 378, 456, 753
MaeIII	GTNAC	7 cut(s)	203, 223, 379, 448, 545, 595, 754
MalI	GATC	5 cut(s)	397, 468, 579, 641, 843
MboI	GATC	5 cut(s)	395, 466, 577, 639, 841
MfeI	CAATTG	1 cut(s)	845
MhlI	GDGCHC	2 cut(s)	159, 864
MluCI	AATT	8 cut(s)	98, 161, 250, 292, 622, 728, 845, 928
MmeI	TCCRAC	2 cut(s)	70, 892
MnlI	CCTC	6 cut(s)	62, 116, 126, 434, 793, 809
MseI	TTAA	3 cut(s)	273, 627, 650
MslI	CAYNNNNRTG	3 cut(s)	41, 377, 752
MspI	CCGG	7 cut(s)	120, 153, 287, 491, 573, 662, 864
MspR9I	CCNGG	7 cut(s)	120, 145, 154, 209, 492, 768, 864
MunI	CAATTG	1 cut(s)	845
MvaI	CCWGG	3 cut(s)	145, 209, 768
MwoI	GCNNNNNNNGC	3 cut(s)	32, 140, 512
NciI	CCSGG	4 cut(s)	120, 154, 492, 864
NcoI	CCATGG	4 cut(s)	219, 336, 591, 711
NdeII	GATC	5 cut(s)	395, 466, 577, 639, 841
NheI	GCTAGC	2 cut(s)	367, 742
NlaIII	CATG	4 cut(s)	223, 340, 595, 715
NlaIV	GGNNCC	2 cut(s)	334, 709
NmuCI	GTSAC	6 cut(s)	203, 379, 448, 545, 595, 754
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	679
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	49, 70, 248, 620
PshAI	GACNNNNGTC	1 cut(s)	455
Psp6I	CCWGG	3 cut(s)	143, 207, 766
PspEI	GGTNACC	1 cut(s)	203
PspGI	CCWGG	3 cut(s)	143, 207, 766
PspN4I	GGNNCC	2 cut(s)	334, 709
PspPI	GGNCC	5 cut(s)	284, 443, 659, 773, 818
PstNI	CAGNNNCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	3 cut(s)	41, 377, 752
SaqAI	TTAA	3 cut(s)	273, 627, 650
SatI	GCNGC	4 cut(s)	48, 69, 247, 619
Sau3AI	GATC	5 cut(s)	395, 466, 577, 639, 841
Sau96I	GGNCC	5 cut(s)	284, 443, 659, 773, 818
ScrFI	CCNGG	7 cut(s)	120, 145, 154, 209, 492, 768, 864
SduI	GDGCHC	2 cut(s)	159, 864
SinI	GGWCC	3 cut(s)	284, 659, 818
SmiMI	CAYNNNNRTG	3 cut(s)	41, 377, 752
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	8 cut(s)	98, 161, 250, 292, 622, 728, 845, 928
SsiI	CCGC	2 cut(s)	351, 495
SspI	AATATT	2 cut(s)	20, 648
SspMI	CTAG	7 cut(s)	32, 368, 426, 554, 743, 813, 923
StyD4I	CCNGG	7 cut(s)	118, 143, 152, 207, 490, 766, 862
StyI	CCWWGG	4 cut(s)	219, 336, 591, 711
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	5 cut(s)	87, 216, 381, 459, 756
TaqI	TCGA	2 cut(s)	240, 267
TasI	AATT	8 cut(s)	98, 161, 250, 292, 622, 728, 845, 928
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	3 cut(s)	273, 627, 650
Tru9I	TTAA	3 cut(s)	273, 627, 650
TscAI	CASTG	3 cut(s)	48, 353, 728
TseFI	GTSAC	6 cut(s)	203, 379, 448, 545, 595, 754
TseI	GCWGC	4 cut(s)	47, 68, 246, 618
Tsp45I	GTSAC	6 cut(s)	203, 379, 448, 545, 595, 754
TspDTI	ATGAA	3 cut(s)	111, 316, 691
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	3 cut(s)	48, 353, 728
VpaK11BI	GGWCC	3 cut(s)	284, 659, 818
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	2 cut(s)	98, 161
XbaI	TCTAGA	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	7 cut(s)	32, 368, 426, 554, 743, 813, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.