Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005512

Physical Location & Seq

Genomic Coordinates Reverse (-)

2206846 .. 2208603

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1028800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGAAAAGAACTCTCCATAGCCCTTCTAGCCATAGCAGTGGTTGGTTTGCTTCACTCCACAGCAGCAATGGAAACCCATGTGGTTGGAGACAAAATCGGGTGGGTGGTTCCTCCCGGCGGTCAATACGCTTATGAAAGTTGGGCCGCCATGCACCATTTCGCCGTTGGTGACCTTCTTGTGTTCAACTTTACAAATGGTGACCAAGATGTAGCGAGGGTCACAAAGGAAGCTTTCGACAACTGCAATTCGACAGACCCCATAACCCTTAAAACAACCAGTCCGGCCAACTTCACCTTGAACACCACTGGAGAGTACTATTTCATTGGCACCAAGGACAAGCACTGTGAGTTGGGACAAAAGCTGGCCATCAACGTGACTGCCGAACATGGATCACCTGCTCCAAGCCCTGCACCCAGAGGACCAGTGACTTACGTCGTTGGTGATAAATTGGGTTGGCTTGTACCAGGCGGTGAACAGGCTTATGCTGCTTGGGCCTATGGCAAGACTTTCATTGTCGGAGACACTCTAGTTTTCAACATTGTCAATGGAACACAAGACGATGTGGCTTTGGTGACCAAGCCAGCTTATGAAAACTGCACCACCAACAGCACTATCGCCGTTTACAAAAATAGTCCAGTGAGTATCCTTCTCAACACCAGCGGTGAGCATTTCTTCATATCCACCTACGATCGCCACTGCCTATTGGGCCAAAAGCTAGCCATTAACGTGACATCAAGCACAGCCCAACCACCATCGGCCAAGACACCATCGGGTTCCATGGCACCTTCCTCGCCTACTCCTCACGGCACAAGTGGACCAGGCGCTGCTCATGCTCCATTCAGCTCAGCCCCATCCAGGATTGGCAGCGGCTACTTCACCTTCTTGCTCATTGCCGTGGCAGCTTTCTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

306

Amino Acids

32.22

Weight (kDa)

6.03

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	43 - 120	6.8e-20	Plastocyanin-like domain
Cu_bind_like	PF02298	159 - 238	6.2e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02890 FvH4_1g02900
malus_domestica	MD02G1028700.v1.1 MD02G1028800.v1.1 MD15G1170300.v1.1 MD15G1170400.v1.1
prunus_persica	Prupe.7G246200_v2.0.a1
pyrus_communis	pycom02g02340 pycom02g02350 pycom15g15180 pycom15g15190
rosa_chinensis	RchiOBHm_Chr2g0088011 RchiOBHm_Chr2g0088031
rosa_laevigata	RLG00000015918
rosa_multiflora	Rmu_sc0003275.1_g000008 Rmu_sc0003275.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153050 Rroxscaffold_2G00153060
rosa_rugosa	Rorug01G0480300 Rorug01G0480400
rosa_samantha	Rh2AG035100 Rh2AG035200 Rh2BG034100 Rh2BG034200 Rh2CG035100 Rh2CG035300 Rh2DG034800
rosa_wichuraiana	Rw2G002760 Rw2G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	406
AccB1I	GGYRCC	2 cut(s)	329, 784
AciI	CCGC	5 cut(s)	120, 147, 471, 663, 870
AclWI	GGATC	1 cut(s)	400
AcoI	YGGCCR	3 cut(s)	285, 366, 759
AfaI	GTAC	2 cut(s)	317, 465
AfiI	CCNNNNNNNGG	2 cut(s)	119, 858
AgsI	TTSAA	3 cut(s)	187, 301, 538
AjnI	CCWGG	3 cut(s)	466, 820, 857
AluBI	AGCT	6 cut(s)	233, 364, 587, 718, 846, 905
AluI	AGCT	6 cut(s)	233, 364, 587, 718, 846, 905
Alw26I	GTCTC	2 cut(s)	84, 516
AlwI	GGATC	1 cut(s)	400
AlwNI	CAGNNNCTG	1 cut(s)	827
AoxI	GGCC	6 cut(s)	144, 285, 366, 495, 709, 759
ApeKI	GCWGC	5 cut(s)	65, 488, 827, 867, 902
AspLEI	GCGC	1 cut(s)	827
AspS9I	GGNCC	5 cut(s)	144, 422, 495, 709, 818
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	9 cut(s)	182, 212, 286, 387, 455, 485, 586, 677, 871
AsuNHI	GCTAGC	1 cut(s)	718
AvaII	GGWCC	2 cut(s)	422, 818
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	329, 784
BbvI	GCAGC	5 cut(s)	77, 475, 814, 879, 914
BccI	CCATC	4 cut(s)	377, 763, 778, 862
BceAI	ACGGC	4 cut(s)	149, 605, 823, 881
BcgI	CGANNNNNNTGC	2 cut(s)	774, 808
BciT130I	CCWGG	3 cut(s)	468, 822, 859
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	84, 516
BfaI	CTAG	3 cut(s)	29, 530, 719
BfoI	RGCGCY	1 cut(s)	828
BfuAI	ACCTGC	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	708
BisI	GCNGC	7 cut(s)	66, 147, 489, 828, 868, 871, 903
BlpI	GCTNAGC	1 cut(s)	847
BlsI	GCNGC	7 cut(s)	67, 148, 490, 829, 869, 872, 904
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	4 cut(s)	117, 468, 822, 859
Bme18I	GGWCC	2 cut(s)	422, 818
BmgT120I	GGNCC	5 cut(s)	144, 422, 495, 709, 818
BmiI	GGNNCC	4 cut(s)	111, 331, 778, 786
BmrFI	CCNGG	4 cut(s)	117, 468, 822, 859
BmtI	GCTAGC	1 cut(s)	722
BoxI	GACNNNNGTC	1 cut(s)	434
BpmI	CTGGAG	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	847
BpuMI	CCSGG	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	333, 780, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 858
Bse1I	ACTGG	4 cut(s)	279, 313, 425, 638
Bse3DI	GCAATG	2 cut(s)	75, 891
BseBI	CCWGG	3 cut(s)	468, 822, 859
BseDI	CCNNGG	3 cut(s)	333, 780, 897
BseGI	GGATG	1 cut(s)	854
BseLI	CCNNNNNNNGG	2 cut(s)	119, 858
BseMI	GCAATG	2 cut(s)	75, 891
BseMII	CTCAG	1 cut(s)	861
BseNI	ACTGG	4 cut(s)	279, 313, 425, 638
BseRI	GAGGAG	1 cut(s)	792
BseXI	GCAGC	5 cut(s)	77, 475, 814, 879, 914
BsgI	GTGCAG	2 cut(s)	396, 583
Bsh1285I	CGRYCG	1 cut(s)	694
BshFI	GGCC	6 cut(s)	146, 287, 368, 497, 711, 761
BshNI	GGYRCC	2 cut(s)	329, 784
BsiEI	CGRYCG	1 cut(s)	694
BsiSI	CCGG	2 cut(s)	117, 284
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	119, 858
BsmAI	GTCTC	2 cut(s)	84, 516
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	6 cut(s)	146, 287, 368, 497, 711, 761
Bsp143I	GATC	2 cut(s)	392, 691
Bsp1720I	GCTNAGC	1 cut(s)	847
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	5 cut(s)	120, 147, 471, 663, 870
BspANI	GGCC	6 cut(s)	146, 287, 368, 497, 711, 761
BspCNI	CTCAG	1 cut(s)	860
BspLI	GGNNCC	4 cut(s)	111, 331, 778, 786
BspMI	ACCTGC	1 cut(s)	406
BspOI	GCTAGC	1 cut(s)	722
BspPI	GGATC	1 cut(s)	400
BspT107I	GGYRCC	2 cut(s)	329, 784
BsrDI	GCAATG	2 cut(s)	75, 891
BsrI	ACTGG	4 cut(s)	279, 313, 425, 638
BssECI	CCNNGG	3 cut(s)	333, 780, 897
BssMI	GATC	2 cut(s)	392, 691
BssT1I	CCWWGG	2 cut(s)	333, 780
Bst2UI	CCWGG	3 cut(s)	468, 822, 859
Bst4CI	ACNGT	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	366, 585, 720
BstDEI	CTNAG	1 cut(s)	847
BstDSI	CCRYGG	2 cut(s)	780, 897
BstEII	GGTNACC	3 cut(s)	170, 200, 574
BstF5I	GGATG	1 cut(s)	854
BstH2I	RGCGCY	1 cut(s)	828
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	2 cut(s)	395, 694
BstMAI	GTCTC	2 cut(s)	84, 516
BstMBI	GATC	2 cut(s)	392, 691
BstMCI	CGRYCG	1 cut(s)	694
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 488, 494, 708, 833, 902
BstNI	CCWGG	3 cut(s)	468, 822, 859
BstPAI	GACNNNNGTC	1 cut(s)	434
BstPI	GGTNACC	3 cut(s)	170, 200, 574
BstSCI	CCNGG	4 cut(s)	115, 466, 820, 857
BstV1I	GCAGC	5 cut(s)	77, 475, 814, 879, 914
BstXI	CCANNNNNNTGG	2 cut(s)	40, 86
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	6 cut(s)	146, 287, 368, 497, 711, 761
BtgI	CCRYGG	2 cut(s)	780, 897
BtsCI	GGATG	1 cut(s)	854
BtsI	GCAGTG	2 cut(s)	45, 697
BtsIMutI	CAGTG	6 cut(s)	45, 306, 343, 432, 645, 697
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	3 cut(s)	366, 585, 720
CaiI	CAGNNNCTG	1 cut(s)	827
CfoI	GCGC	1 cut(s)	827
Cfr13I	GGNCC	5 cut(s)	144, 422, 495, 709, 818
Csp6I	GTAC	2 cut(s)	316, 464
CviAII	CATG	5 cut(s)	80, 151, 389, 781, 833
CviQI	GTAC	2 cut(s)	316, 464
DdeI	CTNAG	1 cut(s)	847
DpnI	GATC	2 cut(s)	394, 693
DpnII	GATC	2 cut(s)	392, 691
EaeI	YGGCCR	3 cut(s)	285, 366, 759
Eco130I	CCWWGG	2 cut(s)	333, 780
Eco47I	GGWCC	2 cut(s)	422, 818
Eco91I	GGTNACC	3 cut(s)	170, 200, 574
EcoO65I	GGTNACC	3 cut(s)	170, 200, 574
EcoRII	CCWGG	3 cut(s)	466, 820, 857
EcoT14I	CCWWGG	2 cut(s)	333, 780
ErhI	CCWWGG	2 cut(s)	333, 780
FaeI	CATG	5 cut(s)	83, 154, 392, 784, 836
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	5 cut(s)	79, 150, 388, 780, 832
Fnu4HI	GCNGC	7 cut(s)	66, 147, 489, 828, 868, 871, 903
FokI	GGATG	1 cut(s)	841
Fsp4HI	GCNGC	7 cut(s)	66, 147, 489, 828, 868, 871, 903
FspBI	CTAG	3 cut(s)	29, 530, 719
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	7 cut(s)	66, 147, 489, 828, 868, 871, 903
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	828
HaeIII	GGCC	6 cut(s)	146, 287, 368, 497, 711, 761
HapII	CCGG	2 cut(s)	117, 284
HhaI	GCGC	1 cut(s)	827
Hin1II	CATG	5 cut(s)	83, 154, 392, 784, 836
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HindIII	AAGCTT	1 cut(s)	231
HpaII	CCGG	2 cut(s)	117, 284
HphI	GGTGA	9 cut(s)	182, 212, 286, 387, 455, 485, 586, 677, 871
Hpy166II	GTNNAC	3 cut(s)	476, 625, 818
Hpy188I	TCNGA	1 cut(s)	521
Hpy8I	GTNNAC	3 cut(s)	476, 625, 818
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	5 cut(s)	35, 185, 659, 798, 892
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	3 cut(s)	375, 435, 729
HpyCH4V	TGCA	4 cut(s)	154, 246, 413, 600
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 488, 494, 708, 833, 902
HpyF3I	CTNAG	1 cut(s)	847
HpySE526I	ACGT	3 cut(s)	375, 435, 729
Hsp92II	CATG	5 cut(s)	83, 154, 392, 784, 836
HspAI	GCGC	1 cut(s)	825
Kzo9I	GATC	2 cut(s)	392, 691
LmnI	GCTCC	2 cut(s)	406, 841
Lsp1109I	GCAGC	5 cut(s)	77, 475, 814, 879, 914
MaeI	CTAG	3 cut(s)	29, 530, 719
MaeII	ACGT	3 cut(s)	375, 435, 729
MaeIII	GTNAC	7 cut(s)	170, 200, 220, 376, 427, 574, 730
MalI	GATC	2 cut(s)	394, 693
MboI	GATC	2 cut(s)	392, 691
MboII	GAAGA	2 cut(s)	667, 901
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	2 cut(s)	247, 449
MluNI	TGGCCA	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	67, 499
MnlI	CCTC	5 cut(s)	123, 210, 413, 802, 813
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	2 cut(s)	270, 726
MslI	CAYNNNNRTG	4 cut(s)	38, 374, 728, 896
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	663, 870
MspI	CCGG	2 cut(s)	117, 284
MspR9I	CCNGG	4 cut(s)	117, 468, 822, 859
MvaI	CCWGG	3 cut(s)	468, 822, 859
MwoI	GCNNNNNNNGC	6 cut(s)	29, 488, 494, 708, 833, 902
NciI	CCSGG	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	2 cut(s)	392, 691
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	5 cut(s)	83, 154, 392, 784, 836
NlaIV	GGNNCC	4 cut(s)	111, 331, 778, 786
NmuCI	GTSAC	7 cut(s)	170, 200, 220, 376, 427, 574, 730
PaqCI	CACCTGC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	857
PkrI	GCNGC	7 cut(s)	67, 148, 490, 829, 869, 872, 904
Ple19I	CGATCG	1 cut(s)	694
PshAI	GACNNNNGTC	1 cut(s)	434
Psp6I	CCWGG	3 cut(s)	466, 820, 857
PspEI	GGTNACC	3 cut(s)	170, 200, 574
PspGI	CCWGG	3 cut(s)	466, 820, 857
PspN4I	GGNNCC	4 cut(s)	111, 331, 778, 786
PspPI	GGNCC	5 cut(s)	144, 422, 495, 709, 818
PstNI	CAGNNNCTG	1 cut(s)	827
PvuI	CGATCG	1 cut(s)	694
RsaI	GTAC	2 cut(s)	317, 465
RsaNI	GTAC	2 cut(s)	316, 464
RseI	CAYNNNNRTG	4 cut(s)	38, 374, 728, 896
SaqAI	TTAA	2 cut(s)	270, 726
SatI	GCNGC	7 cut(s)	66, 147, 489, 828, 868, 871, 903
Sau3AI	GATC	2 cut(s)	392, 691
Sau96I	GGNCC	5 cut(s)	144, 422, 495, 709, 818
ScaI	AGTACT	1 cut(s)	317
ScrFI	CCNGG	4 cut(s)	117, 468, 822, 859
SinI	GGWCC	2 cut(s)	422, 818
SmiMI	CAYNNNNRTG	4 cut(s)	38, 374, 728, 896
Sse9I	AATT	2 cut(s)	247, 449
SsiI	CCGC	5 cut(s)	120, 147, 471, 663, 870
SspMI	CTAG	3 cut(s)	29, 530, 719
StyD4I	CCNGG	4 cut(s)	115, 466, 820, 857
StyI	CCWWGG	2 cut(s)	333, 780
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	3 cut(s)	378, 438, 732
TaqI	TCGA	2 cut(s)	237, 251
TasI	AATT	2 cut(s)	247, 449
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	2 cut(s)	149, 873
Tru1I	TTAA	2 cut(s)	270, 726
Tru9I	TTAA	2 cut(s)	270, 726
TscAI	CASTG	6 cut(s)	45, 313, 350, 432, 645, 704
TseFI	GTSAC	7 cut(s)	170, 200, 220, 376, 427, 574, 730
TseI	GCWGC	5 cut(s)	65, 488, 827, 867, 902
Tsp45I	GTSAC	7 cut(s)	170, 200, 220, 376, 427, 574, 730
TspDTI	ATGAA	5 cut(s)	150, 313, 502, 606, 667
TspRI	CASTG	6 cut(s)	45, 313, 350, 432, 645, 704
VpaK11BI	GGWCC	2 cut(s)	422, 818
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 164
XspI	CTAG	3 cut(s)	29, 530, 719
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.