MD02G1028700.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0005512
Physical Location & Seq
Reverse (-)
2200895 .. 2202539
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1028700.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGCAAGGAACACAAACATGGCGTTTTTCGCAGCCGTGGCAGCGGCCGCTTTGCTAATGAGCTCGGCGGCAGCGGCAACTAATTACCAAGTGGGCGATGGGTTGAGTTGGGTTGTCCCTCCCGGTGGCGCCGCAGCTTATGCTACATGGGCTGCCAACAAAACCTTCGTTGTCGGCGACACTCTTGTATTCACATTTACGAGCGGAAGTCATGACGTGGCGGAAGTGACAAAGCCAGCTTTTGATGCTTGCAATGTAACTAGTCCCATTACTTTGCAGAGTGCCGGCCCTACAAATATCACTCTTAGCTCTTCAGGGGAGCATTACTACATCTGCACCTTCGCTGGCCATTGCAGTGCCGGTCAGAAATTGTCCATCAATGTGAACGGAGCTTCTTCTCCGGCTCCGGCTCCGGCTCCAAGTACTACTCCTCCTCCTCCTCCTCCACCTTCACCACCGGCCTCTGTCCCAGCACCAACACCAAGCTCCACAAGAGCACCTGTCACTTGGACCGTTGGCAACAACTCCGGATGGACCGTCCTCCCTCCAGGCTCTTACCAAACTTGGGCTGCTAACAAGACCTTTTTGGTTGGTGACACTCTAGTGTTCAACTATTTGAACGGAACACACGACGTGGCAGAGGTGACCAAGGCAAACTACGACTCATGCAACACCAGCAACACCCTCGCTCTGTTCACGAACCCACCAACGAGAATCACTCTCAACACCACCGGCGAGAATTTCTTCATCTGCACTTTCACCGGCCACTGTGTCGGAGGCCAGAAGCTTGCCATCAATGTCACCTCCGGCAGCACCACCGCCACGCCACCTTCCTCGACCGCCACTCCTCCAAGCAGCAGTGCCACCCCTCCAGGCTCTAGTGCCACCCCTCCATCTGGAACTCCAACCACCCCAACTACTCCGTCGTCACCGACACCTGAAGGTGCAGCACCACCACCACCAAATGCAGCAGCTTCTCTCGGCGCCGCTGGCCTTTCCGCTTCCTTTTTGTCCATTGCTCTAGCTTTGTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

346

Amino Acids

34.62

Weight (kDa)

5.88

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 122 2.4e-24 Plastocyanin-like domain
Cu_bind_like PF02298 178 - 261 3.7e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 128, 983
AccBSI CCGCTC 1 cut(s) 204
AccIII TCCGGA 1 cut(s) 527
AcoI YGGCCR 3 cut(s) 45, 346, 763
AcsI RAATTY 1 cut(s) 739
AcuI CTGAAG 2 cut(s) 297, 960
AcyI GRCGYC 2 cut(s) 129, 984
AdeI CACNNNGTG 1 cut(s) 634
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 3 cut(s) 125, 565, 896
AgsI TTSAA 2 cut(s) 610, 619
AhlI ACTAGT 1 cut(s) 260
AjiI CACGTC 2 cut(s) 217, 634
AjnI CCWGG 2 cut(s) 547, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 9 cut(s) 63, 137, 239, 309, 392, 486, 787, 974, 1025
AluI AGCT 9 cut(s) 63, 137, 239, 309, 392, 486, 787, 974, 1025
Alw21I GWGCWC 2 cut(s) 65, 499
Aor13HI TCCGGA 1 cut(s) 527
AoxI GGCC 7 cut(s) 45, 286, 346, 459, 763, 778, 991
ApoI RAATTY 1 cut(s) 739
Asp700I GAANNNNTTC 1 cut(s) 743
AspLEI GCGC 2 cut(s) 131, 986
AspS9I GGNCC 3 cut(s) 287, 510, 534
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 6 cut(s) 444, 605, 655, 751, 793, 921
AvaII GGWCC 2 cut(s) 510, 534
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 2 cut(s) 128, 983
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 2 cut(s) 65, 499
BccI CCATC 5 cut(s) 92, 383, 525, 800, 901
BceAI ACGGC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 667, 701
BciT130I CCWGG 2 cut(s) 549, 873
BcnI CCSGG 1 cut(s) 123
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 4 cut(s) 261, 602, 879, 1022
BfoI RGCGCY 2 cut(s) 132, 987
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 3 cut(s) 123, 549, 873
Bme18I GGWCC 2 cut(s) 510, 534
BmgBI CACGTC 2 cut(s) 217, 634
BmgT120I GGNCC 3 cut(s) 287, 510, 534
BmiI GGNNCC 5 cut(s) 130, 405, 411, 417, 985
BmrFI CCNGG 3 cut(s) 123, 549, 873
BmsI GCATC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 703, 735
BpmI CTGGAG 2 cut(s) 531, 855
BpuMI CCSGG 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 129, 984
BsaJI CCNNGG 2 cut(s) 36, 648
BsaWI WCCGGW 1 cut(s) 527
BsaXI ACNNNNNCTCC 6 cut(s) 415, 418, 445, 448, 829, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 565, 896
Bse118I RCCGGY 5 cut(s) 284, 359, 457, 731, 761
Bse3DI GCAATG 3 cut(s) 259, 349, 1014
BseAI TCCGGA 1 cut(s) 527
BseBI CCWGG 2 cut(s) 549, 873
BseDI CCNNGG 2 cut(s) 36, 648
BseGI GGATG 1 cut(s) 536
BseLI CCNNNNNNNGG 3 cut(s) 125, 565, 896
BseMI GCAATG 3 cut(s) 259, 349, 1014
BseRI GAGGAG 6 cut(s) 420, 423, 426, 429, 432, 837
BseX3I CGGCCG 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 469
BsgI GTGCAG 3 cut(s) 319, 736, 966
Bsh1285I CGRYCG 2 cut(s) 48, 840
BshFI GGCC 7 cut(s) 47, 288, 348, 461, 765, 780, 993
BshNI GGYRCC 2 cut(s) 128, 983
BsiEI CGRYCG 2 cut(s) 48, 840
BsiHKAI GWGCWC 2 cut(s) 65, 499
BslFI GGGAC 3 cut(s) 101, 249, 452
BslI CCNNNNNNNGG 3 cut(s) 125, 565, 896
BsmFI GGGAC 3 cut(s) 101, 249, 452
BsnI GGCC 7 cut(s) 47, 288, 348, 461, 765, 780, 993
Bsp1286I GDGCHC 2 cut(s) 65, 499
Bsp13I TCCGGA 1 cut(s) 527
BspANI GGCC 7 cut(s) 47, 288, 348, 461, 765, 780, 993
BspEI TCCGGA 1 cut(s) 527
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 5 cut(s) 130, 405, 411, 417, 985
BspQI GCTCTTC 1 cut(s) 316
BspT107I GGYRCC 2 cut(s) 128, 983
BsrBI CCGCTC 1 cut(s) 204
BsrDI GCAATG 3 cut(s) 259, 349, 1014
BsrFI RCCGGY 5 cut(s) 284, 359, 457, 731, 761
BssAI RCCGGY 5 cut(s) 284, 359, 457, 731, 761
BssECI CCNNGG 2 cut(s) 36, 648
BssNI GRCGYC 2 cut(s) 129, 984
BssT1I CCWWGG 1 cut(s) 648
Bst2UI CCWGG 2 cut(s) 549, 873
Bst4CI ACNGT 3 cut(s) 514, 538, 770
Bst6I CTCTTC 1 cut(s) 316
BstACI GRCGYC 2 cut(s) 129, 984
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 6 cut(s) 237, 250, 286, 346, 789, 991
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 643
BstF5I GGATG 1 cut(s) 536
BstH2I RGCGCY 2 cut(s) 132, 987
BstHHI GCGC 2 cut(s) 131, 986
BstMCI CGRYCG 2 cut(s) 48, 840
BstNI CCWGG 2 cut(s) 549, 873
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 3 cut(s) 121, 547, 871
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 7 cut(s) 47, 288, 348, 461, 765, 780, 993
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 111
BtrI CACGTC 2 cut(s) 217, 634
BtsCI GGATG 1 cut(s) 536
BtsI GCAGTG 2 cut(s) 361, 865
BtsIMutI CAGTG 3 cut(s) 361, 766, 865
Cac8I GCNNGC 6 cut(s) 237, 250, 286, 346, 789, 991
CciI TCATGA 1 cut(s) 211
CciNI GCGGCCGC 1 cut(s) 45
CfoI GCGC 2 cut(s) 131, 986
Cfr10I RCCGGY 5 cut(s) 284, 359, 457, 731, 761
Cfr13I GGNCC 3 cut(s) 287, 510, 534
Csp6I GTAC 1 cut(s) 423
CviAII CATG 4 cut(s) 19, 147, 212, 666
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 305
DinI GGCGCC 2 cut(s) 130, 985
DraIII CACNNNGTG 1 cut(s) 634
EaeI YGGCCR 3 cut(s) 45, 346, 763
EagI CGGCCG 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
EciI GGCGGA 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 510, 534
Eco52I CGGCCG 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 2 cut(s) 297, 960
Eco91I GGTNACC 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 643
EcoRII CCWGG 2 cut(s) 547, 871
EcoT14I CCWWGG 1 cut(s) 648
EcoT38I GRGCYC 1 cut(s) 65
EgeI GGCGCC 2 cut(s) 130, 985
EheI GGCGCC 2 cut(s) 130, 985
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 4 cut(s) 22, 150, 215, 669
FaiI YATR 5 cut(s) 20, 141, 148, 213, 667
FaqI GGGAC 3 cut(s) 101, 249, 452
FatI CATG 4 cut(s) 18, 146, 211, 665
FokI GGATG 1 cut(s) 543
FriOI GRGCYC 1 cut(s) 65
FspBI CTAG 4 cut(s) 261, 602, 879, 1022
GlaI GCGC 2 cut(s) 130, 985
GsaI CCCAGC 1 cut(s) 473
GsuI CTGGAG 2 cut(s) 531, 855
HaeII RGCGCY 2 cut(s) 132, 987
HaeIII GGCC 7 cut(s) 47, 288, 348, 461, 765, 780, 993
HhaI GCGC 2 cut(s) 131, 986
Hin1I GRCGYC 2 cut(s) 129, 984
Hin1II CATG 4 cut(s) 22, 150, 215, 669
Hin6I GCGC 2 cut(s) 129, 984
HinP1I GCGC 2 cut(s) 129, 984
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 2 cut(s) 662, 714
HphI GGTGA 6 cut(s) 444, 605, 655, 751, 793, 921
Hpy166II GTNNAC 2 cut(s) 385, 696
Hpy188I TCNGA 2 cut(s) 366, 776
Hpy188III TCNNGA 4 cut(s) 212, 528, 697, 897
Hpy8I GTNNAC 2 cut(s) 385, 696
Hpy99I CGWCG 2 cut(s) 635, 928
HpyAV CCTTC 5 cut(s) 175, 349, 459, 840, 935
HpyCH4III ACNGT 3 cut(s) 514, 538, 770
HpyCH4IV ACGT 2 cut(s) 216, 633
HpyCH4V TGCA 8 cut(s) 252, 277, 336, 354, 669, 753, 947, 968
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 2 cut(s) 216, 633
Hsp92I GRCGYC 2 cut(s) 129, 984
Hsp92II CATG 4 cut(s) 22, 150, 215, 669
HspAI GCGC 2 cut(s) 129, 984
KasI GGCGCC 2 cut(s) 128, 983
Kpn2I TCCGGA 1 cut(s) 527
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 6 cut(s) 319, 389, 409, 415, 421, 491
LweI GCATC 1 cut(s) 235
MaeI CTAG 4 cut(s) 261, 602, 879, 1022
MaeII ACGT 2 cut(s) 216, 633
MaeIII GTNAC 7 cut(s) 226, 256, 502, 593, 643, 799, 927
MbiI CCGCTC 1 cut(s) 204
MboII GAAGA 3 cut(s) 303, 387, 736
MhlI GDGCHC 2 cut(s) 65, 499
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 3 cut(s) 82, 368, 739
MluNI TGGCCA 1 cut(s) 348
Mly113I GGCGCC 2 cut(s) 129, 984
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 754, 929
Mox20I TGGCCA 1 cut(s) 348
MroI TCCGGA 1 cut(s) 527
MroNI GCCGGC 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 743
MscI TGGCCA 1 cut(s) 348
MslI CAYNNNNRTG 4 cut(s) 17, 354, 380, 602
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 3 cut(s) 44, 74, 989
MspR9I CCNGG 3 cut(s) 123, 549, 873
MvaI CCWGG 2 cut(s) 549, 873
NaeI GCCGGC 1 cut(s) 286
NarI GGCGCC 2 cut(s) 129, 984
NciI CCSGG 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 4 cut(s) 22, 150, 215, 669
NlaIV GGNNCC 5 cut(s) 130, 405, 411, 417, 985
NmeAIII GCCGAG 2 cut(s) 44, 960
NmuCI GTSAC 6 cut(s) 226, 502, 593, 643, 799, 927
NotI GCGGCCGC 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 602
PagI TCATGA 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 627
PdiI GCCGGC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 1 cut(s) 714
PleI GAGTC 1 cut(s) 656
PluTI GGCGCC 2 cut(s) 132, 987
PpsI GAGTC 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 547, 871
PspEI GGTNACC 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 2 cut(s) 547, 871
PspN4I GGNNCC 5 cut(s) 130, 405, 411, 417, 985
PspPI GGNCC 3 cut(s) 287, 510, 534
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 4 cut(s) 17, 354, 380, 602
SacI GAGCTC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 316
Sau96I GGNCC 3 cut(s) 287, 510, 534
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 3 cut(s) 123, 549, 873
SduI GDGCHC 2 cut(s) 65, 499
SfaNI GCATC 1 cut(s) 235
SfoI GGCGCC 2 cut(s) 130, 985
SgrAI CRCCGGYG 1 cut(s) 731
SinI GGWCC 2 cut(s) 510, 534
SmiMI CAYNNNNRTG 4 cut(s) 17, 354, 380, 602
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 3 cut(s) 82, 368, 739
SspDI GGCGCC 2 cut(s) 128, 983
SspMI CTAG 4 cut(s) 261, 602, 879, 1022
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 121, 547, 871
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 3 cut(s) 514, 538, 770
TaiI ACGT 2 cut(s) 219, 636
TaqI TCGA 1 cut(s) 836
TasI AATT 3 cut(s) 82, 368, 739
TatI WGTACW 1 cut(s) 422
TauI GCSGC 6 cut(s) 47, 50, 71, 77, 134, 989
TfiI GAWTC 1 cut(s) 714
TscAI CASTG 3 cut(s) 361, 773, 865
TseFI GTSAC 6 cut(s) 226, 502, 593, 643, 799, 927
Tsp45I GTSAC 6 cut(s) 226, 502, 593, 643, 799, 927
TspDTI ATGAA 1 cut(s) 736
TspGWI ACGGA 3 cut(s) 402, 636, 912
TspRI CASTG 3 cut(s) 361, 773, 865
VpaK11BI GGWCC 2 cut(s) 510, 534
XapI RAATTY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 4 cut(s) 261, 602, 879, 1022
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.