Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005512

Physical Location & Seq

Genomic Coordinates Reverse (-)

13133970 .. 13135693

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1170400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAAGAGAACTCACAATAGCCATTCTAGCCATAGCAGTGGTTGGTCTGCTTCACTCCACTGCAGCACAGAAAACCCATGTCGTTGGAGAACTTCTCGGGTGGCTGGTTCCTCCCGGCGGTAACTACACTTATGAAACCTGGGCAGCTACGCAGCATTTCGCCGTTGGTGACCTTCTTGTGTTCAACTTTACCGACGGTGACCAGGATGTAGCGAGGGTCACAAGGGAAGCTTTCAACAAGTGCAACTCGACAGACCCCATCAAACTTATAACAACCAGTCCGGCCAACTTCACTTTGGACACCACTGGAGAGTACTATTTCATTGGCACCAAGGACAAGCACTGCGAGTTGGGACAAAAGCTGGCCATTAACGTGACTGCGGAACATGTATCACCTGCTCCAAGCCCTGCACCCAGATCAGGACCAGTGACTTACGTCGTTGGTGATAAATTGGGTTGGCTTGTCCTACCAGGCGGTGAATATGCTTATGAAGCTTGGGCCTATGGCAAGACTTTCATTGTCGGAGACACTCTAGTTTTCAACTTTGTCAATGGGACACAAGACGATGTGGCTACGGTGACCAAGTCAGCTTACGAAAACTGCACCACCAACAGCACTATCGCCGTTTACAAAAATAGTCCAGTGAGTATCCTTCTCAACACCACCGGTGAGCATTTCTTCATATCCACCTACGATCGGCGCTGCTTATTAGGCCAAAAGCTAGCCATTAACGTGACATCCGGGAGCACAGCCCAACCACCATCGTCTGACTCACCATCCGGTTCCATAGCACCTTCCTCGCATAGTACTCCCTACGCTAGTGGGCCAGGCGCTGCTTCTCCTCCATTCAGCTCAGCCCCGTCCAGGATTGGTGGCGGCTACACCTTCTTGCTCATTGCCGTGGCAGCTTTCTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

308

Amino Acids

32.59

Weight (kDa)

5.6

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	42 - 120	2.5e-20	Plastocyanin-like domain
Cu_bind_like	PF02298	161 - 240	3.4e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02890 FvH4_1g02900
malus_domestica	MD02G1028700.v1.1 MD02G1028800.v1.1 MD15G1170300.v1.1 MD15G1170400.v1.1
prunus_persica	Prupe.7G246200_v2.0.a1
pyrus_communis	pycom02g02340 pycom02g02350 pycom15g15180 pycom15g15190
rosa_chinensis	RchiOBHm_Chr2g0088011 RchiOBHm_Chr2g0088031
rosa_laevigata	RLG00000015918
rosa_multiflora	Rmu_sc0003275.1_g000008 Rmu_sc0003275.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153050 Rroxscaffold_2G00153060
rosa_rugosa	Rorug01G0480300 Rorug01G0480400
rosa_samantha	Rh2AG035100 Rh2AG035200 Rh2BG034100 Rh2BG034200 Rh2CG035100 Rh2CG035300 Rh2DG034800
rosa_wichuraiana	Rw2G002760 Rw2G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	329
AciI	CCGC	4 cut(s)	120, 383, 477, 879
AcoI	YGGCCR	2 cut(s)	285, 366
AfaI	GTAC	2 cut(s)	317, 811
AfiI	CCNNNNNNNGG	4 cut(s)	119, 422, 699, 867
AflIII	ACRYGT	1 cut(s)	388
AgeI	ACCGGT	1 cut(s)	668
AgsI	TTSAA	3 cut(s)	187, 238, 544
AjnI	CCWGG	5 cut(s)	140, 204, 472, 829, 866
AluBI	AGCT	8 cut(s)	149, 233, 364, 497, 593, 724, 855, 911
AluI	AGCT	8 cut(s)	149, 233, 364, 497, 593, 724, 855, 911
Alw21I	GWGCWC	1 cut(s)	752
Alw26I	GTCTC	1 cut(s)	522
AlwNI	CAGNNNCTG	1 cut(s)	836
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	5 cut(s)	285, 366, 501, 715, 827
ApeKI	GCWGC	6 cut(s)	65, 146, 154, 705, 836, 908
AsiGI	ACCGGT	1 cut(s)	668
AspLEI	GCGC	2 cut(s)	705, 836
AspS9I	GGNCC	3 cut(s)	425, 501, 827
AsuC2I	CCSGG	2 cut(s)	117, 745
AsuHPI	GGTGA	8 cut(s)	182, 212, 387, 458, 491, 592, 683, 768
AsuNHI	GCTAGC	1 cut(s)	724
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	752
BbvI	GCAGC	6 cut(s)	77, 158, 166, 692, 823, 920
BccI	CCATC	3 cut(s)	269, 772, 787
BceAI	ACGGC	3 cut(s)	149, 611, 887
BcgI	CGANNNNNNTGC	2 cut(s)	783, 817
BciT130I	CCWGG	5 cut(s)	142, 206, 474, 831, 868
BciVI	GTATCC	1 cut(s)	662
BcnI	CCSGG	2 cut(s)	117, 745
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	4 cut(s)	29, 536, 725, 822
BfmI	CTRYAG	1 cut(s)	63
BfoI	RGCGCY	2 cut(s)	706, 837
BfuAI	ACCTGC	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	7 cut(s)	66, 147, 155, 706, 837, 880, 909
BlpI	GCTNAGC	1 cut(s)	856
BlsI	GCNGC	7 cut(s)	67, 148, 156, 707, 838, 881, 910
BmcAI	AGTACT	2 cut(s)	317, 811
Bme1390I	CCNGG	7 cut(s)	117, 142, 206, 474, 745, 831, 868
Bme18I	GGWCC	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	425, 501, 827
BmiI	GGNNCC	3 cut(s)	111, 331, 787
BmrFI	CCNGG	7 cut(s)	117, 142, 206, 474, 745, 831, 868
BmtI	GCTAGC	1 cut(s)	728
BoxI	GACNNNNGTC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpmI	CTGGAG	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	856
BpuMI	CCSGG	2 cut(s)	117, 745
BsaJI	CCNNGG	3 cut(s)	141, 333, 903
BsaWI	WCCGGW	2 cut(s)	668, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 422, 699, 867
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	4 cut(s)	279, 313, 428, 644
Bse3DI	GCAATG	1 cut(s)	897
BseBI	CCWGG	5 cut(s)	142, 206, 474, 831, 868
BseDI	CCNNGG	3 cut(s)	141, 333, 903
BseGI	GGATG	3 cut(s)	214, 740, 779
BseLI	CCNNNNNNNGG	4 cut(s)	119, 422, 699, 867
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	1 cut(s)	870
BseNI	ACTGG	4 cut(s)	279, 313, 428, 644
BseRI	GAGGAG	1 cut(s)	834
BseXI	GCAGC	6 cut(s)	77, 158, 166, 692, 823, 920
BsgI	GTGCAG	2 cut(s)	396, 589
Bsh1285I	CGRYCG	1 cut(s)	700
BshFI	GGCC	5 cut(s)	287, 368, 503, 717, 829
BshNI	GGYRCC	1 cut(s)	329
BshTI	ACCGGT	1 cut(s)	668
BsiEI	CGRYCG	1 cut(s)	700
BsiHKAI	GWGCWC	1 cut(s)	752
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	5 cut(s)	117, 284, 669, 744, 783
BslFI	GGGAC	2 cut(s)	369, 571
BslI	CCNNNNNNNGG	4 cut(s)	119, 422, 699, 867
BsmAI	GTCTC	1 cut(s)	522
BsmFI	GGGAC	2 cut(s)	369, 571
BsnI	GGCC	5 cut(s)	287, 368, 503, 717, 829
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp143I	GATC	2 cut(s)	419, 697
Bsp1720I	GCTNAGC	1 cut(s)	856
BspACI	CCGC	4 cut(s)	120, 383, 477, 879
BspANI	GGCC	5 cut(s)	287, 368, 503, 717, 829
BspCNI	CTCAG	1 cut(s)	869
BspLI	GGNNCC	3 cut(s)	111, 331, 787
BspMAI	CTGCAG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	406
BspOI	GCTAGC	1 cut(s)	728
BspT107I	GGYRCC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	897
BsrFI	RCCGGY	1 cut(s)	668
BsrI	ACTGG	4 cut(s)	279, 313, 428, 644
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	3 cut(s)	141, 333, 903
BssMI	GATC	2 cut(s)	419, 697
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	5 cut(s)	142, 206, 474, 831, 868
Bst4CI	ACNGT	2 cut(s)	200, 580
BstC8I	GCNNGC	2 cut(s)	366, 726
BstDEI	CTNAG	1 cut(s)	856
BstDSI	CCRYGG	1 cut(s)	903
BstEII	GGTNACC	3 cut(s)	170, 200, 580
BstF5I	GGATG	3 cut(s)	214, 740, 779
BstH2I	RGCGCY	2 cut(s)	706, 837
BstHHI	GCGC	2 cut(s)	705, 836
BstKTI	GATC	2 cut(s)	422, 700
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	2 cut(s)	419, 697
BstMCI	CGRYCG	1 cut(s)	700
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 494, 714, 908
BstNI	CCWGG	5 cut(s)	142, 206, 474, 831, 868
BstNSI	RCATGY	1 cut(s)	392
BstPAI	GACNNNNGTC	1 cut(s)	437
BstPI	GGTNACC	3 cut(s)	170, 200, 580
BstSCI	CCNGG	7 cut(s)	115, 140, 204, 472, 743, 829, 866
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	6 cut(s)	77, 158, 166, 692, 823, 920
BstXI	CCANNNNNNTGG	2 cut(s)	40, 86
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	5 cut(s)	287, 368, 503, 717, 829
BtgI	CCRYGG	1 cut(s)	903
BtsCI	GGATG	3 cut(s)	214, 740, 779
BtsI	GCAGTG	3 cut(s)	45, 60, 343
BtsIMutI	CAGTG	6 cut(s)	45, 60, 306, 343, 435, 651
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	366, 726
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	2 cut(s)	705, 836
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	3 cut(s)	425, 501, 827
Csp6I	GTAC	2 cut(s)	316, 810
CspAI	ACCGGT	1 cut(s)	668
CviAII	CATG	2 cut(s)	80, 389
CviQI	GTAC	2 cut(s)	316, 810
DdeI	CTNAG	1 cut(s)	856
DpnI	GATC	2 cut(s)	421, 699
DpnII	GATC	2 cut(s)	419, 697
EaeI	YGGCCR	2 cut(s)	285, 366
Eco130I	CCWWGG	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	98
Eco91I	GGTNACC	3 cut(s)	170, 200, 580
EcoO65I	GGTNACC	3 cut(s)	170, 200, 580
EcoRII	CCWGG	5 cut(s)	140, 204, 472, 829, 866
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	83, 392
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FaqI	GGGAC	2 cut(s)	369, 571
FatI	CATG	2 cut(s)	79, 388
Fnu4HI	GCNGC	7 cut(s)	66, 147, 155, 706, 837, 880, 909
FokI	GGATG	3 cut(s)	221, 727, 766
Fsp4HI	GCNGC	7 cut(s)	66, 147, 155, 706, 837, 880, 909
FspBI	CTAG	4 cut(s)	29, 536, 725, 822
GlaI	GCGC	2 cut(s)	704, 835
GluI	GCNGC	7 cut(s)	66, 147, 155, 706, 837, 880, 909
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	2 cut(s)	706, 837
HaeIII	GGCC	5 cut(s)	287, 368, 503, 717, 829
HapII	CCGG	5 cut(s)	117, 284, 669, 744, 783
HhaI	GCGC	2 cut(s)	705, 836
Hin1II	CATG	2 cut(s)	83, 392
Hin6I	GCGC	2 cut(s)	703, 834
HinP1I	GCGC	2 cut(s)	703, 834
HindIII	AAGCTT	2 cut(s)	231, 495
HinfI	GANTC	1 cut(s)	773
HpaII	CCGG	5 cut(s)	117, 284, 669, 744, 783
HphI	GGTGA	8 cut(s)	182, 212, 387, 458, 491, 592, 683, 768
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	2 cut(s)	527, 772
Hpy188III	TCNNGA	1 cut(s)	423
Hpy8I	GTNNAC	1 cut(s)	631
Hpy99I	CGWCG	2 cut(s)	200, 443
HpyAV	CCTTC	4 cut(s)	185, 665, 807, 898
HpyCH4III	ACNGT	2 cut(s)	200, 580
HpyCH4IV	ACGT	3 cut(s)	375, 438, 735
HpyCH4V	TGCA	4 cut(s)	65, 246, 413, 606
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 494, 714, 908
HpyF3I	CTNAG	1 cut(s)	856
HpySE526I	ACGT	3 cut(s)	375, 438, 735
Hsp92II	CATG	2 cut(s)	83, 392
HspAI	GCGC	2 cut(s)	703, 834
Kzo9I	GATC	2 cut(s)	419, 697
LmnI	GCTCC	2 cut(s)	406, 747
Lsp1109I	GCAGC	6 cut(s)	77, 158, 166, 692, 823, 920
MaeI	CTAG	4 cut(s)	29, 536, 725, 822
MaeII	ACGT	3 cut(s)	375, 438, 735
MaeIII	GTNAC	8 cut(s)	122, 170, 200, 220, 376, 430, 580, 736
MalI	GATC	2 cut(s)	421, 699
MboI	GATC	2 cut(s)	419, 697
MboII	GAAGA	3 cut(s)	18, 673, 907
MhlI	GDGCHC	1 cut(s)	752
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	767
MmeI	TCCRAC	2 cut(s)	67, 505
MnlI	CCTC	4 cut(s)	123, 210, 811, 855
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	2 cut(s)	372, 732
MslI	CAYNNNNRTG	4 cut(s)	38, 374, 734, 902
Msp20I	TGGCCA	1 cut(s)	368
MspI	CCGG	5 cut(s)	117, 284, 669, 744, 783
MspR9I	CCNGG	7 cut(s)	117, 142, 206, 474, 745, 831, 868
MvaI	CCWGG	5 cut(s)	142, 206, 474, 831, 868
MwoI	GCNNNNNNNGC	4 cut(s)	29, 494, 714, 908
NciI	CCSGG	2 cut(s)	117, 745
NdeII	GATC	2 cut(s)	419, 697
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	2 cut(s)	83, 392
NlaIV	GGNNCC	3 cut(s)	111, 331, 787
NmuCI	GTSAC	7 cut(s)	170, 200, 220, 376, 430, 580, 736
NspI	RCATGY	1 cut(s)	392
PaqCI	CACCTGC	1 cut(s)	406
PciI	ACATGT	1 cut(s)	388
PflFI	GACNNNGTC	1 cut(s)	586
PfoI	TCCNGGA	2 cut(s)	743, 866
PinAI	ACCGGT	1 cut(s)	668
PkrI	GCNGC	7 cut(s)	67, 148, 156, 707, 838, 881, 910
Ple19I	CGATCG	1 cut(s)	700
PleI	GAGTC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	767
PscI	ACATGT	1 cut(s)	388
PshAI	GACNNNNGTC	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	272
Psp6I	CCWGG	5 cut(s)	140, 204, 472, 829, 866
PspEI	GGTNACC	3 cut(s)	170, 200, 580
PspGI	CCWGG	5 cut(s)	140, 204, 472, 829, 866
PspN4I	GGNNCC	3 cut(s)	111, 331, 787
PspPI	GGNCC	3 cut(s)	425, 501, 827
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	836
PsyI	GACNNNGTC	1 cut(s)	586
PvuI	CGATCG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	317, 811
RsaNI	GTAC	2 cut(s)	316, 810
RseI	CAYNNNNRTG	4 cut(s)	38, 374, 734, 902
SaqAI	TTAA	2 cut(s)	372, 732
SatI	GCNGC	7 cut(s)	66, 147, 155, 706, 837, 880, 909
Sau3AI	GATC	2 cut(s)	419, 697
Sau96I	GGNCC	3 cut(s)	425, 501, 827
ScaI	AGTACT	2 cut(s)	317, 811
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	7 cut(s)	117, 142, 206, 474, 745, 831, 868
SduI	GDGCHC	1 cut(s)	752
SfcI	CTRYAG	1 cut(s)	63
SgrAI	CRCCGGYG	1 cut(s)	668
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	4 cut(s)	38, 374, 734, 902
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	4 cut(s)	120, 383, 477, 879
SspMI	CTAG	4 cut(s)	29, 536, 725, 822
StyD4I	CCNGG	7 cut(s)	115, 140, 204, 472, 743, 829, 866
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	200, 580
TaiI	ACGT	3 cut(s)	378, 441, 738
TaqI	TCGA	1 cut(s)	251
TasI	AATT	1 cut(s)	452
TatI	WGTACW	2 cut(s)	315, 809
TauI	GCSGC	1 cut(s)	882
Tru1I	TTAA	2 cut(s)	372, 732
Tru9I	TTAA	2 cut(s)	372, 732
TscAI	CASTG	6 cut(s)	45, 67, 313, 350, 435, 651
TseFI	GTSAC	7 cut(s)	170, 200, 220, 376, 430, 580, 736
TseI	GCWGC	6 cut(s)	65, 146, 154, 705, 836, 908
Tsp45I	GTSAC	7 cut(s)	170, 200, 220, 376, 430, 580, 736
TspDTI	ATGAA	5 cut(s)	150, 313, 507, 508, 673
TspRI	CASTG	6 cut(s)	45, 67, 313, 350, 435, 651
Tth111I	GACNNNGTC	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	425
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XspI	CTAG	4 cut(s)	29, 536, 725, 822
ZrmI	AGTACT	2 cut(s)	317, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.