Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005512

Physical Location & Seq

Genomic Coordinates Reverse (-)

1646908 .. 1648609

Gene Structure 1702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGAAGTGAGCTCAAATATTTCGCCGTTCTAGCCATAACAGTGGCTGCCCTCCTTCAATCCACAGCAGCAGTAGAAAAACACGTCGTCGGAGATAAATTCGGATGGATTGTTCCTCCTGGAGGTCATTACGCTTATGAAGTCTGGGCTTCCGGCCATAAGTTCTCCGTTGGCGACATTCTTGAGTTCAACTTCACAACTGGTGAGCAAGACGTAGCCAAGGTTACAAAGGAAGCTTTCGACAGCTGCAATTCAACAAACCCCATCGAGCTTAAGACAACTGGTCCGGCCAATTTCACGTTGGATACGATTGGGGAATACTACTTCATTGGAACCATGGACAAGCACTGCGAGTTGGGACAAAAGCTAGCCATCAACGTGACTTCAACCACCTCTGCTCCGGCTCCTGCTCCTGGTCCAGCTACTCCTAGAGGTCCGGTGACTTACATCGTTGGTGAACAGTTGGGTTGGTTTGTGCCTGGTGAATTTTCTTATTCTGCTTGGGCTTATGGCAAAACCTTCATGGTTGGAGACACATTAGTTTTCAACTTCCTCAATGAGACACAAGATGTAGCTATTGTGACCAAGGCTGTTTTTGACAACTGCACCACCAATAGCACCCTTGCCGTTTATAAATACAGTCCGGTGCACATCATCCTCAACACCACTGGTGAACACTACTTCACATCCACCTACGATAGCCACTGCGAATACGGACAGAAGCTAGCGATTAACGTGACCGGCAAGAGCGCAGGAACGCCGTCCCCGTGTCCGTCTCCATCGAGCTCCACAACGCCTGCTCCTTCAAAGGCTCCGTCAGCTCATTCACCGGTCGCTTCTGGCCCATACACCTCCGCCGCCTCTTCCACCATCACTGGCAGTGGCTACTACCTTACCATCTTGCTCGTTGGACTGGCTTTCTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

310

Amino Acids

32.88

Weight (kDa)

5.53

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	44 - 121	4.4e-21	Plastocyanin-like domain
Cu_bind_like	PF02298	157 - 240	1.3e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02890 FvH4_1g02900
malus_domestica	MD02G1028700.v1.1 MD02G1028800.v1.1 MD15G1170300.v1.1 MD15G1170400.v1.1
prunus_persica	Prupe.7G246200_v2.0.a1
pyrus_communis	pycom02g02340 pycom02g02350 pycom15g15180 pycom15g15190
rosa_chinensis	RchiOBHm_Chr2g0088011 RchiOBHm_Chr2g0088031
rosa_laevigata	RLG00000015918
rosa_multiflora	Rmu_sc0003275.1_g000008 Rmu_sc0003275.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153050 Rroxscaffold_2G00153060
rosa_rugosa	Rorug01G0480300 Rorug01G0480400
rosa_samantha	Rh2AG035100 Rh2AG035200 Rh2BG034100 Rh2BG034200 Rh2CG035100 Rh2CG035300 Rh2DG034800
rosa_wichuraiana	Rw2G002760 Rw2G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AciI	CCGC	2 cut(s)	855, 858
AcoI	YGGCCR	2 cut(s)	154, 288
AcsI	RAATTY	2 cut(s)	98, 485
AfiI	CCNNNNNNNGG	2 cut(s)	122, 413
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	829
AgsI	TTSAA	6 cut(s)	59, 190, 255, 387, 547, 807
AhdI	GACNNNNNGTC	1 cut(s)	282
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	3 cut(s)	118, 412, 478
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
Alw21I	GWGCWC	3 cut(s)	15, 651, 788
Alw26I	GTCTC	3 cut(s)	525, 554, 780
Alw44I	GTGCAC	1 cut(s)	647
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	3 cut(s)	154, 288, 841
ApaLI	GTGCAC	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	47, 68, 246
ApoI	RAATTY	2 cut(s)	98, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
AsiGI	ACCGGT	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	4 cut(s)	284, 416, 434, 842
AsuHPI	GGTGA	6 cut(s)	215, 451, 467, 494, 683, 819
AsuNHI	GCTAGC	2 cut(s)	367, 724
AvaII	GGWCC	3 cut(s)	284, 416, 434
BaeGI	GKGCMC	1 cut(s)	651
BanII	GRGCYC	2 cut(s)	15, 788
Bbv12I	GWGCWC	3 cut(s)	15, 651, 788
BbvI	GCAGC	3 cut(s)	34, 80, 233
BccI	CCATC	6 cut(s)	99, 272, 380, 787, 878, 905
BceAI	ACGGC	3 cut(s)	11, 611, 745
BciT130I	CCWGG	3 cut(s)	120, 414, 480
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	3 cut(s)	525, 554, 780
BfaI	CTAG	4 cut(s)	32, 368, 429, 725
BfrI	CTTAAG	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	48, 69, 247, 858
BlsI	GCNGC	4 cut(s)	49, 70, 248, 859
Bme1390I	CCNGG	3 cut(s)	120, 414, 480
Bme18I	GGWCC	3 cut(s)	284, 416, 434
BmeRI	GACNNNNNGTC	1 cut(s)	282
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	4 cut(s)	284, 416, 434, 842
BmiI	GGNNCC	3 cut(s)	334, 405, 813
BmrFI	CCNGG	3 cut(s)	120, 414, 480
BmtI	GCTAGC	2 cut(s)	371, 728
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	219, 336, 585
BsaWI	WCCGGW	3 cut(s)	436, 643, 829
BsaXI	ACNNNNNCTCC	4 cut(s)	382, 412, 784, 814
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 413
Bse118I	RCCGGY	2 cut(s)	740, 829
Bse1I	ACTGG	5 cut(s)	205, 286, 673, 880, 918
BseBI	CCWGG	3 cut(s)	120, 414, 480
BseDI	CCNNGG	3 cut(s)	219, 336, 585
BseGI	GGATG	3 cut(s)	110, 654, 686
BseLI	CCNNNNNNNGG	2 cut(s)	122, 413
BseNI	ACTGG	5 cut(s)	205, 286, 673, 880, 918
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	3 cut(s)	34, 80, 233
BsgI	GTGCAG	1 cut(s)	589
Bsh1285I	CGRYCG	1 cut(s)	834
BshFI	GGCC	3 cut(s)	156, 290, 843
BshTI	ACCGGT	1 cut(s)	829
BsiEI	CGRYCG	1 cut(s)	834
BsiHKAI	GWGCWC	3 cut(s)	15, 651, 788
BsiSI	CCGG	7 cut(s)	153, 287, 401, 437, 644, 741, 830
BslFI	GGGAC	2 cut(s)	372, 748
BslI	CCNNNNNNNGG	2 cut(s)	122, 413
BsmAI	GTCTC	3 cut(s)	525, 554, 780
BsmBI	CGTCTC	1 cut(s)	780
BsmFI	GGGAC	2 cut(s)	372, 748
BsnI	GGCC	3 cut(s)	156, 290, 843
Bsp1286I	GDGCHC	3 cut(s)	15, 651, 788
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	855, 858
BspANI	GGCC	3 cut(s)	156, 290, 843
BspLI	GGNNCC	3 cut(s)	334, 405, 813
BspOI	GCTAGC	2 cut(s)	371, 728
BspTI	CTTAAG	1 cut(s)	272
BsrFI	RCCGGY	2 cut(s)	740, 829
BsrI	ACTGG	5 cut(s)	205, 286, 673, 880, 918
BssAI	RCCGGY	2 cut(s)	740, 829
BssECI	CCNNGG	3 cut(s)	219, 336, 585
BssT1I	CCWWGG	3 cut(s)	219, 336, 585
Bst2UI	CCWGG	3 cut(s)	120, 414, 480
Bst4CI	ACNGT	3 cut(s)	43, 462, 641
Bst6I	CTCTTC	1 cut(s)	868
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	369, 726, 798
BstDSI	CCRYGG	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	3 cut(s)	110, 654, 686
BstHHI	GCGC	1 cut(s)	752
BstMAI	GTCTC	3 cut(s)	525, 554, 780
BstMCI	CGRYCG	1 cut(s)	834
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 818
BstNI	CCWGG	3 cut(s)	120, 414, 480
BstSCI	CCNGG	3 cut(s)	118, 412, 478
BstSLI	GKGCMC	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	34, 80, 233
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	156, 290, 843
BtgI	CCRYGG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	110, 654, 686
BtsI	GCAGTG	3 cut(s)	346, 703, 886
BtsIMutI	CAGTG	6 cut(s)	48, 346, 666, 703, 873, 886
Cac8I	GCNNGC	3 cut(s)	369, 726, 798
CaiI	CAGNNNCTG	1 cut(s)	47
CfoI	GCGC	1 cut(s)	752
Cfr10I	RCCGGY	2 cut(s)	740, 829
Cfr13I	GGNCC	4 cut(s)	284, 416, 434, 842
CspAI	ACCGGT	1 cut(s)	829
CviAII	CATG	2 cut(s)	337, 523
DriI	GACNNNNNGTC	1 cut(s)	282
EaeI	YGGCCR	2 cut(s)	154, 288
Eam1104I	CTCTTC	1 cut(s)	868
Eam1105I	GACNNNNNGTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	868
EciI	GGCGGA	1 cut(s)	844
Ecl136II	GAGCTC	2 cut(s)	13, 786
Eco130I	CCWWGG	3 cut(s)	219, 336, 585
Eco24I	GRGCYC	2 cut(s)	15, 788
Eco47I	GGWCC	3 cut(s)	284, 416, 434
Eco53kI	GAGCTC	2 cut(s)	13, 786
EcoICRI	GAGCTC	2 cut(s)	13, 786
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoRII	CCWGG	3 cut(s)	118, 412, 478
EcoT14I	CCWWGG	3 cut(s)	219, 336, 585
EcoT38I	GRGCYC	2 cut(s)	15, 788
ErhI	CCWWGG	3 cut(s)	219, 336, 585
Esp3I	CGTCTC	1 cut(s)	780
FaeI	CATG	2 cut(s)	340, 526
FaiI	YATR	8 cut(s)	38, 138, 159, 338, 510, 524, 633, 847
FaqI	GGGAC	2 cut(s)	372, 748
FatI	CATG	2 cut(s)	336, 522
Fnu4HI	GCNGC	4 cut(s)	48, 69, 247, 858
FokI	GGATG	3 cut(s)	117, 641, 673
FriOI	GRGCYC	2 cut(s)	15, 788
Fsp4HI	GCNGC	4 cut(s)	48, 69, 247, 858
FspBI	CTAG	4 cut(s)	32, 368, 429, 725
GlaI	GCGC	1 cut(s)	751
GluI	GCNGC	4 cut(s)	48, 69, 247, 858
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	156, 290, 843
HapII	CCGG	7 cut(s)	153, 287, 401, 437, 644, 741, 830
HhaI	GCGC	1 cut(s)	752
Hin1II	CATG	2 cut(s)	340, 526
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HindIII	AAGCTT	1 cut(s)	234
HpaII	CCGG	7 cut(s)	153, 287, 401, 437, 644, 741, 830
HphI	GGTGA	6 cut(s)	215, 451, 467, 494, 683, 819
Hpy166II	GTNNAC	3 cut(s)	458, 649, 674
Hpy188I	TCNGA	2 cut(s)	92, 104
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	3 cut(s)	458, 649, 674
Hpy99I	CGWCG	2 cut(s)	89, 92
HpyAV	CCTTC	3 cut(s)	65, 529, 813
HpyCH4III	ACNGT	3 cut(s)	43, 462, 641
HpyCH4IV	ACGT	5 cut(s)	84, 213, 299, 378, 735
HpyCH4V	TGCA	3 cut(s)	249, 606, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 818
HpySE526I	ACGT	5 cut(s)	84, 213, 299, 378, 735
Hsp92II	CATG	2 cut(s)	340, 526
HspAI	GCGC	1 cut(s)	750
LmnI	GCTCC	6 cut(s)	403, 409, 415, 791, 805, 817
Lsp1109I	GCAGC	3 cut(s)	34, 80, 233
MaeI	CTAG	4 cut(s)	32, 368, 429, 725
MaeII	ACGT	5 cut(s)	84, 213, 299, 378, 735
MaeIII	GTNAC	5 cut(s)	223, 379, 439, 580, 736
MboII	GAAGA	2 cut(s)	855, 913
MhlI	GDGCHC	3 cut(s)	15, 651, 788
MluCI	AATT	4 cut(s)	98, 250, 292, 485
MmeI	TCCRAC	4 cut(s)	70, 282, 508, 889
MnlI	CCTC	9 cut(s)	62, 116, 126, 403, 425, 563, 668, 862, 871
MseI	TTAA	2 cut(s)	273, 732
MslI	CAYNNNNRTG	2 cut(s)	41, 377
MspA1I	CMGCKG	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	7 cut(s)	153, 287, 401, 437, 644, 741, 830
MspR9I	CCNGG	3 cut(s)	120, 414, 480
MvaI	CCWGG	3 cut(s)	120, 414, 480
MwoI	GCNNNNNNNGC	2 cut(s)	32, 818
NcoI	CCATGG	1 cut(s)	336
NheI	GCTAGC	2 cut(s)	367, 724
NlaIII	CATG	2 cut(s)	340, 526
NlaIV	GGNNCC	3 cut(s)	334, 405, 813
NmuCI	GTSAC	4 cut(s)	379, 439, 580, 736
PcsI	WCGNNNNNNNCGW	2 cut(s)	305, 764
PfoI	TCCNGGA	1 cut(s)	118
PinAI	ACCGGT	1 cut(s)	829
PkrI	GCNGC	4 cut(s)	49, 70, 248, 859
PsiI	TTATAA	1 cut(s)	633
Psp124BI	GAGCTC	2 cut(s)	15, 788
Psp6I	CCWGG	3 cut(s)	118, 412, 478
PspGI	CCWGG	3 cut(s)	118, 412, 478
PspN4I	GGNNCC	3 cut(s)	334, 405, 813
PspPI	GGNCC	4 cut(s)	284, 416, 434, 842
PstNI	CAGNNNCTG	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	246
RseI	CAYNNNNRTG	2 cut(s)	41, 377
SacI	GAGCTC	2 cut(s)	15, 788
SaqAI	TTAA	2 cut(s)	273, 732
SatI	GCNGC	4 cut(s)	48, 69, 247, 858
Sau96I	GGNCC	4 cut(s)	284, 416, 434, 842
ScrFI	CCNGG	3 cut(s)	120, 414, 480
SduI	GDGCHC	3 cut(s)	15, 651, 788
SinI	GGWCC	3 cut(s)	284, 416, 434
SmiMI	CAYNNNNRTG	2 cut(s)	41, 377
SmlI	CTYRAG	2 cut(s)	182, 272
SmoI	CTYRAG	2 cut(s)	182, 272
Sse9I	AATT	4 cut(s)	98, 250, 292, 485
SsiI	CCGC	2 cut(s)	855, 858
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	4 cut(s)	32, 368, 429, 725
SstI	GAGCTC	2 cut(s)	15, 788
StyD4I	CCNGG	3 cut(s)	118, 412, 478
StyI	CCWWGG	3 cut(s)	219, 336, 585
TaaI	ACNGT	3 cut(s)	43, 462, 641
TaiI	ACGT	5 cut(s)	87, 216, 302, 381, 738
TaqI	TCGA	3 cut(s)	240, 267, 782
TasI	AATT	4 cut(s)	98, 250, 292, 485
TauI	GCSGC	1 cut(s)	860
Tru1I	TTAA	2 cut(s)	273, 732
Tru9I	TTAA	2 cut(s)	273, 732
TscAI	CASTG	6 cut(s)	48, 353, 673, 710, 880, 886
TseFI	GTSAC	4 cut(s)	379, 439, 580, 736
TseI	GCWGC	3 cut(s)	47, 68, 246
Tsp45I	GTSAC	4 cut(s)	379, 439, 580, 736
TspDTI	ATGAA	3 cut(s)	153, 316, 511
TspGWI	ACGGA	4 cut(s)	157, 729, 762, 804
TspRI	CASTG	6 cut(s)	48, 353, 673, 710, 880, 886
Vha464I	CTTAAG	1 cut(s)	272
VneI	GTGCAC	1 cut(s)	647
VpaK11BI	GGWCC	3 cut(s)	284, 416, 434
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	2 cut(s)	98, 485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	4 cut(s)	32, 368, 429, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.