FvH4_1g02890

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005512
Physical Location & Seq
Reverse (-)
1642374 .. 1644327
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02890.t1

Sequence Viewer

Length: 1062 bp
ATGGCAAGGAACTCGAACACGGCGGTTTTCGTAGCCCTAGTGGCAGCTTTGGTAATTAGCACGGCCTCGGCGGTGACTCATCAAGTCGGAGATGGTATAGGCTGGAACGTCCCTCCAGGTGGAGCTGTGGCTTACAGTACATGGTCGTCTAACAACACCTTCAAAGCCGGTGACACTCTTGTCTTTACATTTGCAAGCGGAGCACACGACGTCGCAAAAGTGACCAAGGAAGCCTTCGATGCCTGCAATGCAACCAATCCCATTTCCTTGACTACTAACTCACCAGCAACTCTGACCCTTACTTCCGGAGAGCACTACTACATCTGTACCTTCGATAGCCACTGTGGCTCCGGACAGAAGTTGGCCGTCAACGTTACCGGAACGACTTCTTCCCCTTCTCCGGCTCCCACCGTGAGTCCTCCTACTTCGTCGCCGGCTCCGGTTCTTTCTCCAGAGCCCAGCAGCAGTGCTAGCCCCCCTGCACCTTCTGCCCCGGCACCAAGCCCCTCAACTGGACCCACTACTTACACTGTTGGAGACACCGCCGGTTGGAATGTGCTCGGCAACGGTACTTACACCGTTTGGGCCTCTAACAAGACCTTCTTCGTTGGTGACGTTCTAGTGTTCAACTTCTTGAATCAATCGCACGACGTTGCTGAAGTGACCAAGACAAACTATGAGTCATGTAACACCTCCAACACACTCTCCCTCTACTCAAACCCACCCGTCAGAATCACACTCAACACAACCGGCGAGATCTTCTTCATCTGCACTTTCGCCGGCCACTGCAACCAAGGCCAGAAGCTCGCCATCAACGTCAGCAGCAGCACCGCCACACCCACACCCACCTCCGCACCGGCTCCTTCTCCAACCAGCGGCTCTGCCCCTACTCCAAGCACTAGTACTGCCACCCCACCAAGCACCGGCACCACCACTCCAACCACCCCTGTACCAGCCAGTGACGTCACCCCACCACCATCACCTAGCACCGCGACATCTCTCGGCGTTGCTGGCCTATCCGCCACCTTCTTGTCCATTGCTGTAGCTTTGTTCATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

354

Amino Acids

35.71

Weight (kDa)

5.34

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 119 7.6e-22 Plastocyanin-like domain
Cu_bind_like PF02298 184 - 267 4.2e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 2 cut(s) 213, 966
AccB1I GGYRCC 2 cut(s) 496, 926
AccII CGCG 1 cut(s) 992
AccIII TCCGGA 2 cut(s) 305, 350
AciI CCGC 9 cut(s) 23, 71, 198, 543, 831, 852, 876, 990, 1020
AclI AACGTT 1 cut(s) 372
AcoI YGGCCR 2 cut(s) 363, 781
AcuI CTGAAG 1 cut(s) 678
AcyI GRCGYC 2 cut(s) 210, 963
AfaI GTAC 5 cut(s) 139, 328, 571, 904, 951
AfiI CCNNNNNNNGG 6 cut(s) 119, 400, 512, 549, 875, 923
AgsI TTSAA 3 cut(s) 163, 628, 637
AhlI ACTAGT 1 cut(s) 899
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 4 cut(s) 47, 125, 805, 1046
AluI AGCT 4 cut(s) 47, 125, 805, 1046
Alw21I GWGCWC 3 cut(s) 205, 315, 561
Alw26I GTCTC 1 cut(s) 531
Aor13HI TCCGGA 2 cut(s) 305, 350
AoxI GGCC 6 cut(s) 63, 363, 585, 781, 796, 1012
ApeKI GCWGC 4 cut(s) 44, 462, 822, 825
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
Asp700I GAANNNNTTC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 515, 585
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 6 cut(s) 85, 182, 273, 623, 958, 972
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 1 cut(s) 515
BaeI ACNNNNGTAYC 4 cut(s) 310, 343, 933, 966
BanI GGYRCC 2 cut(s) 496, 926
BanII GRGCYC 1 cut(s) 459
Bbv12I GWGCWC 3 cut(s) 205, 315, 561
BbvI GCAGC 4 cut(s) 56, 474, 834, 837
BccI CCATC 3 cut(s) 86, 818, 985
BceAI ACGGC 3 cut(s) 36, 78, 350
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 531
BcuI ACTAGT 1 cut(s) 899
BfaI CTAG 5 cut(s) 38, 471, 620, 900, 984
BfmI CTRYAG 1 cut(s) 1041
BglI GCCNNNNNGGC 2 cut(s) 41, 345
BglII AGATCT 1 cut(s) 756
BisI GCNGC 5 cut(s) 45, 463, 823, 826, 877
BlsI GCNGC 5 cut(s) 46, 464, 824, 827, 878
BmcAI AGTACT 1 cut(s) 904
Bme1390I CCNGG 2 cut(s) 117, 494
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 515, 585
BmiI GGNNCC 7 cut(s) 349, 405, 438, 498, 517, 861, 928
BmrFI CCNGG 2 cut(s) 117, 494
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 474
BpmI CTGGAG 2 cut(s) 99, 435
BpuMI CCSGG 1 cut(s) 494
BsaHI GRCGYC 2 cut(s) 210, 963
BsaJI CCNNGG 4 cut(s) 66, 225, 492, 793
BsaWI WCCGGW 4 cut(s) 305, 350, 377, 439
BsaXI ACNNNNNCTCC 6 cut(s) 332, 362, 689, 719, 919, 949
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 400, 512, 549, 875, 923
Bse118I RCCGGY 7 cut(s) 167, 433, 545, 749, 779, 856, 923
Bse1I ACTGG 2 cut(s) 517, 957
Bse3DI GCAATG 2 cut(s) 253, 1035
BseAI TCCGGA 2 cut(s) 305, 350
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 66, 225, 492, 793
BseLI CCNNNNNNNGG 6 cut(s) 119, 400, 512, 549, 875, 923
BseMI GCAATG 2 cut(s) 253, 1035
BseNI ACTGG 2 cut(s) 517, 957
BseXI GCAGC 4 cut(s) 56, 474, 834, 837
BseYI CCCAGC 1 cut(s) 458
BsgI GTGCAG 2 cut(s) 465, 754
Bsh1236I CGCG 1 cut(s) 992
BshFI GGCC 6 cut(s) 65, 365, 587, 783, 798, 1014
BshNI GGYRCC 2 cut(s) 496, 926
BsiHKAI GWGCWC 3 cut(s) 205, 315, 561
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 6 cut(s) 119, 400, 512, 549, 875, 923
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 6 cut(s) 65, 365, 587, 783, 798, 1014
Bsp1286I GDGCHC 4 cut(s) 205, 315, 459, 561
Bsp13I TCCGGA 2 cut(s) 305, 350
Bsp143I GATC 1 cut(s) 756
BspACI CCGC 9 cut(s) 23, 71, 198, 543, 831, 852, 876, 990, 1020
BspANI GGCC 6 cut(s) 65, 365, 587, 783, 798, 1014
BspEI TCCGGA 2 cut(s) 305, 350
BspFNI CGCG 1 cut(s) 992
BspLI GGNNCC 7 cut(s) 349, 405, 438, 498, 517, 861, 928
BspOI GCTAGC 1 cut(s) 474
BspT107I GGYRCC 2 cut(s) 496, 926
BsrDI GCAATG 2 cut(s) 253, 1035
BsrFI RCCGGY 7 cut(s) 167, 433, 545, 749, 779, 856, 923
BsrI ACTGG 2 cut(s) 517, 957
BssAI RCCGGY 7 cut(s) 167, 433, 545, 749, 779, 856, 923
BssECI CCNNGG 4 cut(s) 66, 225, 492, 793
BssMI GATC 1 cut(s) 756
BssNI GRCGYC 2 cut(s) 210, 963
BssT1I CCWWGG 2 cut(s) 225, 793
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 6 cut(s) 137, 344, 412, 532, 569, 580
BstACI GRCGYC 2 cut(s) 210, 963
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 7 cut(s) 196, 244, 435, 472, 781, 807, 1012
BstFNI CGCG 1 cut(s) 992
BstKTI GATC 1 cut(s) 759
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 1 cut(s) 756
BstMWI GCNNNNNNNGC 9 cut(s) 41, 200, 239, 248, 345, 471, 488, 795, 1011
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 2 cut(s) 115, 492
BstSFI CTRYAG 1 cut(s) 1041
BstUI CGCG 1 cut(s) 992
BstV1I GCAGC 4 cut(s) 56, 474, 834, 837
BstX2I RGATCY 1 cut(s) 756
BstYI RGATCY 1 cut(s) 756
BsuRI GGCC 6 cut(s) 65, 365, 587, 783, 798, 1014
BtsI GCAGTG 2 cut(s) 472, 784
BtsIMutI CAGTG 5 cut(s) 340, 472, 528, 784, 964
Cac8I GCNNGC 7 cut(s) 196, 244, 435, 472, 781, 807, 1012
Cfr10I RCCGGY 7 cut(s) 167, 433, 545, 749, 779, 856, 923
Cfr13I GGNCC 2 cut(s) 515, 585
Csp6I GTAC 5 cut(s) 138, 327, 570, 903, 950
CviAII CATG 3 cut(s) 141, 684, 1054
CviQI GTAC 5 cut(s) 138, 327, 570, 903, 950
DpnI GATC 1 cut(s) 758
DpnII GATC 1 cut(s) 756
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 363, 781
EciI GGCGGA 1 cut(s) 1009
Eco130I CCWWGG 2 cut(s) 225, 793
Eco24I GRGCYC 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 225, 793
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 2 cut(s) 225, 793
FaeI CATG 3 cut(s) 144, 687, 1057
FaiI YATR 5 cut(s) 98, 142, 678, 685, 1055
FalI AAGNNNNNCTT 4 cut(s) 218, 250, 587, 619
FaqI GGGAC 1 cut(s) 95
FatI CATG 3 cut(s) 140, 683, 1053
Fnu4HI GCNGC 5 cut(s) 45, 463, 823, 826, 877
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 5 cut(s) 45, 463, 823, 826, 877
FspBI CTAG 5 cut(s) 38, 471, 620, 900, 984
GluI GCNGC 5 cut(s) 45, 463, 823, 826, 877
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 2 cut(s) 99, 435
HaeIII GGCC 6 cut(s) 65, 365, 587, 783, 798, 1014
Hin1I GRCGYC 2 cut(s) 210, 963
Hin1II CATG 3 cut(s) 144, 687, 1057
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 5 cut(s) 76, 415, 637, 680, 732
HphI GGTGA 6 cut(s) 85, 182, 273, 623, 958, 972
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 89, 294, 731
Hpy188III TCNNGA 4 cut(s) 306, 351, 452, 634
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 4 cut(s) 212, 215, 433, 653
HpyAV CCTTC 8 cut(s) 169, 244, 340, 405, 495, 610, 873, 1036
HpyCH4III ACNGT 6 cut(s) 137, 344, 412, 532, 569, 580
HpyCH4IV ACGT 7 cut(s) 108, 210, 372, 615, 651, 816, 963
HpyCH4V TGCA 6 cut(s) 194, 246, 251, 482, 771, 789
HpyF10VI GCNNNNNNNGC 9 cut(s) 41, 200, 239, 248, 345, 471, 488, 795, 1011
HpySE526I ACGT 7 cut(s) 108, 210, 372, 615, 651, 816, 963
Hsp92I GRCGYC 2 cut(s) 210, 963
Hsp92II CATG 3 cut(s) 144, 687, 1057
Kpn2I TCCGGA 2 cut(s) 305, 350
KroI GCCGGC 2 cut(s) 433, 779
KroNI GCCGGC 2 cut(s) 435, 781
Kzo9I GATC 1 cut(s) 756
LmnI GCTCC 6 cut(s) 122, 200, 353, 409, 442, 865
Lsp1109I GCAGC 4 cut(s) 56, 474, 834, 837
LweI GCATC 1 cut(s) 229
MaeI CTAG 5 cut(s) 38, 471, 620, 900, 984
MaeII ACGT 7 cut(s) 108, 210, 372, 615, 651, 816, 963
MaeIII GTNAC 9 cut(s) 73, 170, 220, 373, 611, 661, 686, 959, 964
MalI GATC 1 cut(s) 758
MboI GATC 1 cut(s) 756
MboII GAAGA 4 cut(s) 381, 595, 751, 754
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 4 cut(s) 205, 315, 459, 561
MluCI AATT 1 cut(s) 54
MlyI GAGTC 3 cut(s) 70, 424, 689
MmeI TCCRAC 6 cut(s) 67, 514, 530, 720, 893, 962
MnlI CCTC 8 cut(s) 76, 123, 429, 517, 598, 703, 719, 859
MroI TCCGGA 2 cut(s) 305, 350
MroNI GCCGGC 2 cut(s) 433, 779
MroXI GAANNNNTTC 1 cut(s) 385
MseI TTAA 1 cut(s) 1060
MspA1I CMGCKG 1 cut(s) 876
MspR9I CCNGG 2 cut(s) 117, 494
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 992
MwoI GCNNNNNNNGC 9 cut(s) 41, 200, 239, 248, 345, 471, 488, 795, 1011
NaeI GCCGGC 2 cut(s) 435, 781
NciI CCSGG 1 cut(s) 494
NdeII GATC 1 cut(s) 756
NgoMIV GCCGGC 2 cut(s) 433, 779
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 3 cut(s) 144, 687, 1057
NlaIV GGNNCC 7 cut(s) 349, 405, 438, 498, 517, 861, 928
NmeAIII GCCGAG 3 cut(s) 47, 540, 981
NmuCI GTSAC 7 cut(s) 73, 170, 220, 611, 661, 959, 964
PcsI WCGNNNNNNNCGW 2 cut(s) 612, 813
PdiI GCCGGC 2 cut(s) 435, 781
PdmI GAANNNNTTC 1 cut(s) 385
PfeI GAWTC 2 cut(s) 637, 732
PkrI GCNGC 5 cut(s) 46, 464, 824, 827, 878
PleI GAGTC 3 cut(s) 70, 423, 688
PpsI GAGTC 3 cut(s) 70, 423, 688
Psp1406I AACGTT 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 7 cut(s) 349, 405, 438, 498, 517, 861, 928
PspPI GGNCC 2 cut(s) 515, 585
PsuI RGATCY 1 cut(s) 756
RsaI GTAC 5 cut(s) 139, 328, 571, 904, 951
RsaNI GTAC 5 cut(s) 138, 327, 570, 903, 950
SaqAI TTAA 1 cut(s) 1060
SatI GCNGC 5 cut(s) 45, 463, 823, 826, 877
Sau3AI GATC 1 cut(s) 756
Sau96I GGNCC 2 cut(s) 515, 585
ScaI AGTACT 1 cut(s) 904
SchI GAGTC 3 cut(s) 70, 424, 689
ScrFI CCNGG 2 cut(s) 117, 494
SduI GDGCHC 4 cut(s) 205, 315, 459, 561
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 1041
SinI GGWCC 1 cut(s) 515
SpeI ACTAGT 1 cut(s) 899
Sse9I AATT 1 cut(s) 54
SsiI CCGC 9 cut(s) 23, 71, 198, 543, 831, 852, 876, 990, 1020
SspMI CTAG 5 cut(s) 38, 471, 620, 900, 984
StyD4I CCNGG 2 cut(s) 115, 492
StyI CCWWGG 2 cut(s) 225, 793
TaaI ACNGT 6 cut(s) 137, 344, 412, 532, 569, 580
TaiI ACGT 7 cut(s) 111, 213, 375, 618, 654, 819, 966
TaqI TCGA 3 cut(s) 14, 237, 333
TasI AATT 1 cut(s) 54
TatI WGTACW 2 cut(s) 137, 902
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 2 cut(s) 637, 732
Tru1I TTAA 1 cut(s) 1060
Tru9I TTAA 1 cut(s) 1060
TscAI CASTG 5 cut(s) 347, 472, 535, 791, 964
TseFI GTSAC 7 cut(s) 73, 170, 220, 611, 661, 959, 964
TseI GCWGC 4 cut(s) 44, 462, 822, 825
Tsp45I GTSAC 7 cut(s) 73, 170, 220, 611, 661, 959, 964
TspDTI ATGAA 2 cut(s) 754, 1042
TspRI CASTG 5 cut(s) 347, 472, 535, 791, 964
VpaK11BI GGWCC 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 385
XspI CTAG 5 cut(s) 38, 471, 620, 900, 984
ZraI GACGTC 2 cut(s) 211, 964
ZrmI AGTACT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.