Rh2AG035100

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005512
Physical Location & Seq
Reverse (-)
2595353 .. 2597475
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG035100.1

Sequence Viewer

Length: 1068 bp
ATGGCAAGGAACTTGAACATGGCGGTTTTCGCAGCCCTAGTGGCAGCTTTGGTAATTAGCTCTGTCTCAGCAGTCACTCATCAAGTCGGTAATGGTTTGGGCTGGAACATCCCTCCCGGTGGAGCTGTGGCTTACAGTACATGGTCATCAAACAATACCTTTAAAGCCGGCGACATTCTTGTCTTTACATTTGCAAGCGGACAACACGACGTCGCAGAAGTGACCAAGGAAGCCTTCGATGCCTGCAATGCAACCGGTCCCATTTCCTTGACGACCGACACACCAGCTAACTTTACCCTTACTTCTGGAGAGCACTACTACATCTGTACCTTCGGTACCCACTGTAGCGCCGGACAGAAGTTGGCCGTCAACGTTACCGGAACTACCTCTTCCCCTTCTCCCGCTCCCAGCATGAGTCCTCCTGCTTCGTCGCCGGCTCCGGTTCTTGCTCCAGAGCCAAGCAGCAGTGCTAGCCCCCCCCCACCTTCTGCCCCAGCACCAAGCCCCTCAGCTGGACCCACCACTTACACTGTCGGAGACACCGCCGGATGGAATGTTATCGGCAACGATACTTACAGCACCTGGGCCTCTGACAAGACCTTCAGGGTTGGTGACATTCTAGTGTTCAACTTCTTGAATAGATCACACGACGTGGCTGTGGTGACCAAGACAAATTATGAGTCATGTGGCACCTCCAACCCCCTCTCTCTCTACACAAACCCACCCGTCAGTATCACACTGAACACAACCGGCGAGCACTTCTTCATCTGCACTTTCCCCAACCACTGCAACAACGGCCAGAAGCTCGCTGTCACCGTTAAGGGCACCACTGCCACACCGACCTCCGCCCCCTCACCTTCTCCAGGCGGCCCAGCCCCTACTCCAAGCACTACTGCCACTCCACCAAGCACCGGTGCCACCCCACCAAGCGGCACCACCACTCCTTCCACCCCTCCACCCGCCGCTGACGTCACCCCACCACCATCACCTAATGCCGCGACATCTCTTGGCGTTGCTGGCCTATCCGCCACCTTCTTGTCCATTGCTGTAGCTTTGTTCATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

355

Amino Acids

35.9

Weight (kDa)

5.51

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 119 3.3e-21 Plastocyanin-like domain
Cu_bind_like PF02298 184 - 267 4.4e-28 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 2 cut(s) 213, 972
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 5 cut(s) 335, 689, 824, 914, 932
AccBSI CCGCTC 1 cut(s) 404
AccII CGCG 1 cut(s) 998
AclI AACGTT 1 cut(s) 372
AcoI YGGCCR 2 cut(s) 363, 796
AcuI CTGAAG 1 cut(s) 586
AcyI GRCGYC 2 cut(s) 210, 969
AdeI CACNNNGTG 1 cut(s) 652
AfaI GTAC 3 cut(s) 139, 328, 337
AfiI CCNNNNNNNGG 6 cut(s) 119, 512, 549, 863, 911, 929
AgeI ACCGGT 2 cut(s) 254, 911
AgsI TTSAA 3 cut(s) 16, 628, 637
AjiI CACGTC 1 cut(s) 652
AjnI CCWGG 2 cut(s) 581, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 7 cut(s) 47, 60, 125, 287, 512, 805, 1052
AluI AGCT 7 cut(s) 47, 60, 125, 287, 512, 805, 1052
Alw21I GWGCWC 2 cut(s) 315, 759
Alw26I GTCTC 2 cut(s) 70, 531
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 5 cut(s) 363, 585, 796, 868, 1018
ApeKI GCWGC 3 cut(s) 32, 44, 462
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AsiGI ACCGGT 2 cut(s) 254, 911
Asp718I GGTACC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 4 cut(s) 257, 515, 585, 869
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 6 cut(s) 623, 673, 805, 846, 964, 978
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 2 cut(s) 257, 515
BaeGI GKGCMC 1 cut(s) 827
BaeI ACNNNNGTAYC 2 cut(s) 310, 343
BanI GGYRCC 5 cut(s) 335, 689, 824, 914, 932
Bbv12I GWGCWC 2 cut(s) 315, 759
BbvCI CCTCAGC 1 cut(s) 508
BbvI GCAGC 3 cut(s) 44, 56, 474
BccI CCATC 2 cut(s) 543, 991
BceAI ACGGC 2 cut(s) 350, 811
BciT130I CCWGG 2 cut(s) 583, 864
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 70, 531
BfaI CTAG 3 cut(s) 38, 471, 620
BfmI CTRYAG 2 cut(s) 343, 1047
BfoI RGCGCY 1 cut(s) 351
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 7 cut(s) 33, 45, 463, 868, 931, 963, 996
BlsI GCNGC 7 cut(s) 34, 46, 464, 869, 932, 964, 997
Bme1390I CCNGG 3 cut(s) 117, 583, 864
Bme18I GGWCC 2 cut(s) 257, 515
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 4 cut(s) 257, 515, 585, 869
BmiI GGNNCC 8 cut(s) 259, 337, 438, 517, 691, 826, 916, 934
BmrFI CCNGG 3 cut(s) 117, 583, 864
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 474
BpmI CTGGAG 3 cut(s) 327, 435, 846
Bpu10I CCTNAGC 1 cut(s) 508
BpuMI CCSGG 1 cut(s) 117
BsaHI GRCGYC 2 cut(s) 210, 969
BsaJI CCNNGG 2 cut(s) 225, 582
BsaWI WCCGGW 4 cut(s) 254, 377, 439, 911
BsaXI ACNNNNNCTCC 4 cut(s) 883, 913, 925, 955
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 512, 549, 863, 911, 929
Bse118I RCCGGY 5 cut(s) 167, 254, 433, 749, 911
Bse3DI GCAATG 2 cut(s) 253, 1041
BseBI CCWGG 2 cut(s) 583, 864
BseDI CCNNGG 2 cut(s) 225, 582
BseGI GGATG 2 cut(s) 108, 554
BseLI CCNNNNNNNGG 6 cut(s) 119, 512, 549, 863, 911, 929
BseMI GCAATG 2 cut(s) 253, 1041
BseMII CTCAG 2 cut(s) 81, 522
BseSI GKGCMC 1 cut(s) 827
BseXI GCAGC 3 cut(s) 44, 56, 474
BseYI CCCAGC 3 cut(s) 407, 493, 871
BsgI GTGCAG 1 cut(s) 754
Bsh1236I CGCG 1 cut(s) 998
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 5 cut(s) 365, 587, 798, 870, 1020
BshNI GGYRCC 5 cut(s) 335, 689, 824, 914, 932
BshTI ACCGGT 2 cut(s) 254, 911
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 315, 759
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 6 cut(s) 119, 512, 549, 863, 911, 929
BsmAI GTCTC 2 cut(s) 70, 531
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 5 cut(s) 365, 587, 798, 870, 1020
Bsp1286I GDGCHC 3 cut(s) 315, 759, 827
Bsp143I GATC 1 cut(s) 641
BspANI GGCC 5 cut(s) 365, 587, 798, 870, 1020
BspCNI CTCAG 2 cut(s) 80, 521
BspFNI CGCG 1 cut(s) 998
BspLI GGNNCC 8 cut(s) 259, 337, 438, 517, 691, 826, 916, 934
BspOI GCTAGC 1 cut(s) 474
BspT107I GGYRCC 5 cut(s) 335, 689, 824, 914, 932
BsrBI CCGCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 253, 1041
BsrFI RCCGGY 5 cut(s) 167, 254, 433, 749, 911
BssAI RCCGGY 5 cut(s) 167, 254, 433, 749, 911
BssECI CCNNGG 2 cut(s) 225, 582
BssMI GATC 1 cut(s) 641
BssNI GRCGYC 2 cut(s) 210, 969
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 583, 864
Bst4CI ACNGT 4 cut(s) 137, 344, 532, 817
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 2 cut(s) 210, 969
BstC8I GCNNGC 8 cut(s) 169, 196, 244, 435, 472, 755, 807, 1018
BstDEI CTNAG 2 cut(s) 67, 508
BstEII GGTNACC 1 cut(s) 661
BstENI CCTNNNNNAGG 1 cut(s) 861
BstF5I GGATG 2 cut(s) 108, 554
BstFNI CGCG 1 cut(s) 998
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 1 cut(s) 644
BstMAI GTCTC 2 cut(s) 70, 531
BstMBI GATC 1 cut(s) 641
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 7 cut(s) 29, 41, 239, 248, 471, 795, 1017
BstNI CCWGG 2 cut(s) 583, 864
BstPI GGTNACC 1 cut(s) 661
BstSCI CCNGG 3 cut(s) 115, 581, 862
BstSFI CTRYAG 2 cut(s) 343, 1047
BstSLI GKGCMC 1 cut(s) 827
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 3 cut(s) 44, 56, 474
BsuRI GGCC 5 cut(s) 365, 587, 798, 870, 1020
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 2 cut(s) 108, 554
BtsI GCAGTG 3 cut(s) 472, 784, 828
BtsIMutI CAGTG 6 cut(s) 340, 472, 528, 737, 784, 828
Cac8I GCNNGC 8 cut(s) 169, 196, 244, 435, 472, 755, 807, 1018
CaiI CAGNNNCTG 1 cut(s) 582
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 5 cut(s) 167, 254, 433, 749, 911
Cfr13I GGNCC 4 cut(s) 257, 515, 585, 869
Csp6I GTAC 3 cut(s) 138, 327, 336
CspAI ACCGGT 2 cut(s) 254, 911
CviAII CATG 5 cut(s) 19, 141, 412, 684, 1060
CviQI GTAC 3 cut(s) 138, 327, 336
DdeI CTNAG 2 cut(s) 67, 508
DpnI GATC 1 cut(s) 643
DpnII GATC 1 cut(s) 641
DraI TTTAAA 1 cut(s) 163
DraIII CACNNNGTG 1 cut(s) 652
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 363, 796
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
EciI GGCGGA 2 cut(s) 835, 1015
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 257, 515
Eco57I CTGAAG 1 cut(s) 586
Eco91I GGTNACC 1 cut(s) 661
EcoNI CCTNNNNNAGG 1 cut(s) 861
EcoO65I GGTNACC 1 cut(s) 661
EcoRII CCWGG 2 cut(s) 581, 862
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 5 cut(s) 22, 144, 415, 687, 1063
FaiI YATR 6 cut(s) 20, 142, 413, 678, 685, 1061
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 243
FatI CATG 5 cut(s) 18, 140, 411, 683, 1059
FauI CCCGC 2 cut(s) 409, 967
Fnu4HI GCNGC 7 cut(s) 33, 45, 463, 868, 931, 963, 996
FokI GGATG 2 cut(s) 95, 561
Fsp4HI GCNGC 7 cut(s) 33, 45, 463, 868, 931, 963, 996
FspBI CTAG 3 cut(s) 38, 471, 620
GlaI GCGC 1 cut(s) 349
GluI GCNGC 7 cut(s) 33, 45, 463, 868, 931, 963, 996
GsaI CCCAGC 3 cut(s) 411, 497, 875
GsuI CTGGAG 3 cut(s) 327, 435, 846
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 5 cut(s) 365, 587, 798, 870, 1020
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 2 cut(s) 210, 969
Hin1II CATG 5 cut(s) 22, 144, 415, 687, 1063
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 2 cut(s) 415, 680
HphI GGTGA 6 cut(s) 623, 673, 805, 846, 964, 978
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 536, 592
Hpy188III TCNNGA 3 cut(s) 306, 452, 634
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 4 cut(s) 212, 215, 433, 653
HpyAV CCTTC 8 cut(s) 244, 340, 405, 495, 610, 867, 954, 1042
HpyCH4III ACNGT 4 cut(s) 137, 344, 532, 817
HpyCH4IV ACGT 4 cut(s) 210, 372, 651, 969
HpyCH4V TGCA 5 cut(s) 194, 246, 251, 771, 789
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 41, 239, 248, 471, 795, 1017
HpyF3I CTNAG 2 cut(s) 67, 508
HpySE526I ACGT 4 cut(s) 210, 372, 651, 969
Hsp92I GRCGYC 2 cut(s) 210, 969
Hsp92II CATG 5 cut(s) 22, 144, 415, 687, 1063
HspAI GCGC 1 cut(s) 348
KpnI GGTACC 1 cut(s) 339
KroI GCCGGC 2 cut(s) 167, 433
KroNI GCCGGC 2 cut(s) 169, 435
Kzo9I GATC 1 cut(s) 641
LmnI GCTCC 4 cut(s) 122, 409, 442, 454
Lsp1109I GCAGC 3 cut(s) 44, 56, 474
LweI GCATC 1 cut(s) 229
MaeI CTAG 3 cut(s) 38, 471, 620
MaeII ACGT 4 cut(s) 210, 372, 651, 969
MaeIII GTNAC 7 cut(s) 73, 220, 373, 611, 661, 811, 970
MalI GATC 1 cut(s) 643
MbiI CCGCTC 1 cut(s) 404
MboI GATC 1 cut(s) 641
MboII GAAGA 2 cut(s) 381, 754
MhlI GDGCHC 3 cut(s) 315, 759, 827
MluCI AATT 2 cut(s) 54, 673
MlyI GAGTC 2 cut(s) 424, 689
MmeI TCCRAC 2 cut(s) 514, 720
MroNI GCCGGC 2 cut(s) 167, 433
MseI TTAA 3 cut(s) 162, 819, 1066
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 512, 965
MspR9I CCNGG 3 cut(s) 117, 583, 864
MvaI CCWGG 2 cut(s) 583, 864
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 7 cut(s) 29, 41, 239, 248, 471, 795, 1017
NaeI GCCGGC 2 cut(s) 169, 435
NciI CCSGG 1 cut(s) 117
NdeII GATC 1 cut(s) 641
NgoMIV GCCGGC 2 cut(s) 167, 433
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 5 cut(s) 22, 144, 415, 687, 1063
NlaIV GGNNCC 8 cut(s) 259, 337, 438, 517, 691, 826, 916, 934
NmuCI GTSAC 6 cut(s) 73, 220, 611, 661, 811, 970
PcsI WCGNNNNNNNCGW 1 cut(s) 813
PdiI GCCGGC 2 cut(s) 169, 435
PinAI ACCGGT 2 cut(s) 254, 911
PkrI GCNGC 7 cut(s) 34, 46, 464, 869, 932, 964, 997
PleI GAGTC 2 cut(s) 423, 688
PpsI GAGTC 2 cut(s) 423, 688
Psp1406I AACGTT 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 581, 862
PspEI GGTNACC 1 cut(s) 661
PspFI CCCAGC 3 cut(s) 407, 493, 871
PspGI CCWGG 2 cut(s) 581, 862
PspN4I GGNNCC 8 cut(s) 259, 337, 438, 517, 691, 826, 916, 934
PspPI GGNCC 4 cut(s) 257, 515, 585, 869
PstNI CAGNNNCTG 1 cut(s) 582
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 3 cut(s) 139, 328, 337
RsaNI GTAC 3 cut(s) 138, 327, 336
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 3 cut(s) 162, 819, 1066
SatI GCNGC 7 cut(s) 33, 45, 463, 868, 931, 963, 996
Sau3AI GATC 1 cut(s) 641
Sau96I GGNCC 4 cut(s) 257, 515, 585, 869
SchI GAGTC 2 cut(s) 424, 689
ScrFI CCNGG 3 cut(s) 117, 583, 864
SduI GDGCHC 3 cut(s) 315, 759, 827
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 2 cut(s) 343, 1047
SgrAI CRCCGGYG 1 cut(s) 911
SinI GGWCC 2 cut(s) 257, 515
SmiMI CAYNNNNRTG 1 cut(s) 620
Sse9I AATT 2 cut(s) 54, 673
SspMI CTAG 3 cut(s) 38, 471, 620
StyD4I CCNGG 3 cut(s) 115, 581, 862
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 4 cut(s) 137, 344, 532, 817
TaiI ACGT 4 cut(s) 213, 375, 654, 972
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 290
TasI AATT 2 cut(s) 54, 673
TatI WGTACW 1 cut(s) 137
TauI GCSGC 4 cut(s) 870, 933, 965, 998
Tru1I TTAA 3 cut(s) 162, 819, 1066
Tru9I TTAA 3 cut(s) 162, 819, 1066
TscAI CASTG 6 cut(s) 347, 472, 535, 744, 791, 835
TseFI GTSAC 6 cut(s) 73, 220, 611, 661, 811, 970
TseI GCWGC 3 cut(s) 32, 44, 462
Tsp45I GTSAC 6 cut(s) 73, 220, 611, 661, 811, 970
TspDTI ATGAA 2 cut(s) 754, 1048
TspRI CASTG 6 cut(s) 347, 472, 535, 744, 791, 835
VpaK11BI GGWCC 2 cut(s) 257, 515
XagI CCTNNNNNAGG 1 cut(s) 861
XspI CTAG 3 cut(s) 38, 471, 620
ZraI GACGTC 2 cut(s) 211, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.