Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005512

Physical Location & Seq

Genomic Coordinates Reverse (-)

1447920 .. 1450182

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCAAAGAGACAATATGGGAAAAGAACTCTCCATAGCCATTCTAGCCATAGCAGTTGTTGGTCTGCTTCACTCCACAGCAGCAATGGAAACCCATGTGGTTGGAGACAAAATCGGGTGGGTGGTTCCTCCCGGCGGTCAATACGCTTATGCAAGCTGGGCCGCCGTGCACCATTTCGCCGTTGGTGACCTTCTCGTGTTCAACTTTACAAACGGTGACCAAGATGTAGCGAGGGTCACAAAGGAAGCTTTCGACAACTGCAATTCGACAGACCCCATAACCCTTGAAACAACCAGTCCGGCCAACTTCACTTTGAACACCACTGGAGAGTACTATTTCATTGGCACCAAGGATAAGCACTGTGAGTTGGGACAAAAGCTGGCCATCAACGTGACCGCCGAACATGGATCACCTGCTCCAAGCCCTGCACCCAGAGGACCAGTGACTTACGTCGTCGGTGATCAATTGGGTTGGCTTGTACCAGGCGATGAACAGGCTTATGCTGCTTGGGCCTATTTCAAGACTTTCATTGTCGGAGACACTCTAGGTAATTATACACTCAGATATCCTCTTTGCATGACGCACGTAAAGCATCAACATGTTTTCCACTTTGTCAATGGAACACAAGACGATGTGGCTTTGGTGACCAAGCCAGCTTATGAAAACTGCACCACCAACAGCACTATCGCCGTTTACACAAATAGTCCAGTGAATATCCTTCTCAACACCAGCGGTGAGCATTTCTTCATATCCACCTATGATCGCCACTGCCTATTGGGCCAAAAGCTAGCCATTAACGTGACATCAAGGACAGCCCAACCACCATCGGGTTCCATAGCACCTTCCTCGCCTACTACTAACGGCACCAGTGGACCAGGAGCTGCTCATGCTCCATTCAGCTCAGCCCCGTCCAGGATTGGCAGCGGCTACTTCACCTTCTTGTTCATTGCCGTGGCAGCTTTCTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

324

Amino Acids

34.75

Weight (kDa)

5.96

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	48 - 125	2e-19	Plastocyanin-like domain
Cu_bind_like	PF02298	158 - 261	1.2e-11	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02890 FvH4_1g02900
malus_domestica	MD02G1028700.v1.1 MD02G1028800.v1.1 MD15G1170300.v1.1 MD15G1170400.v1.1
prunus_persica	Prupe.7G246200_v2.0.a1
pyrus_communis	pycom02g02340 pycom02g02350 pycom15g15180 pycom15g15190
rosa_chinensis	RchiOBHm_Chr2g0088011 RchiOBHm_Chr2g0088031
rosa_laevigata	RLG00000015918
rosa_multiflora	Rmu_sc0003275.1_g000008 Rmu_sc0003275.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153050 Rroxscaffold_2G00153060
rosa_rugosa	Rorug01G0480300 Rorug01G0480400
rosa_samantha	Rh2AG035100 Rh2AG035200 Rh2BG034100 Rh2BG034200 Rh2CG035100 Rh2CG035300 Rh2DG034800
rosa_wichuraiana	Rw2G002760 Rw2G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	421
AccB1I	GGYRCC	2 cut(s)	344, 863
AciI	CCGC	5 cut(s)	135, 162, 396, 732, 924
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	2 cut(s)	300, 381
AfaI	GTAC	2 cut(s)	332, 480
AfiI	CCNNNNNNNGG	3 cut(s)	134, 827, 912
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	4 cut(s)	202, 287, 316, 520
AjnI	CCWGG	3 cut(s)	481, 874, 911
AluBI	AGCT	8 cut(s)	156, 248, 379, 656, 787, 881, 900, 959
AluI	AGCT	8 cut(s)	156, 248, 379, 656, 787, 881, 900, 959
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	3 cut(s)	3, 99, 531
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	415
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	5 cut(s)	159, 300, 381, 510, 778
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	5 cut(s)	80, 503, 881, 921, 956
AspS9I	GGNCC	5 cut(s)	159, 437, 510, 778, 872
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	7 cut(s)	197, 227, 402, 470, 655, 746, 925
AsuNHI	GCTAGC	1 cut(s)	787
AvaII	GGWCC	2 cut(s)	437, 872
BaeGI	GKGCMC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	2 cut(s)	344, 863
BauI	CACGAG	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	92, 490, 868, 933, 968
BccI	CCATC	2 cut(s)	392, 832
BceAI	ACGGC	5 cut(s)	149, 164, 674, 877, 935
BcgI	CGANNNNNNTGC	2 cut(s)	828, 862
BciT130I	CCWGG	3 cut(s)	483, 876, 913
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	3 cut(s)	3, 99, 531
BfaI	CTAG	3 cut(s)	44, 545, 788
BfuAI	ACCTGC	1 cut(s)	421
BglI	GCCNNNNNGGC	1 cut(s)	777
BisI	GCNGC	7 cut(s)	81, 162, 504, 882, 922, 925, 957
BlpI	GCTNAGC	1 cut(s)	901
BlsI	GCNGC	7 cut(s)	82, 163, 505, 883, 923, 926, 958
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	4 cut(s)	132, 483, 876, 913
Bme18I	GGWCC	2 cut(s)	437, 872
BmgT120I	GGNCC	5 cut(s)	159, 437, 510, 778, 872
BmiI	GGNNCC	4 cut(s)	126, 346, 832, 865
BmrFI	CCNGG	4 cut(s)	132, 483, 876, 913
BmsI	GCATC	1 cut(s)	601
BmtI	GCTAGC	1 cut(s)	791
BoxI	GACNNNNGTC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	345
Bpu1102I	GCTNAGC	1 cut(s)	901
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	586
BsaJI	CCNNGG	2 cut(s)	348, 951
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 827, 912
Bse1I	ACTGG	5 cut(s)	294, 328, 440, 707, 867
Bse3DI	GCAATG	2 cut(s)	90, 945
BseBI	CCWGG	3 cut(s)	483, 876, 913
BseDI	CCNNGG	2 cut(s)	348, 951
BseLI	CCNNNNNNNGG	3 cut(s)	134, 827, 912
BseMI	GCAATG	2 cut(s)	90, 945
BseMII	CTCAG	2 cut(s)	574, 915
BseNI	ACTGG	5 cut(s)	294, 328, 440, 707, 867
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	5 cut(s)	92, 490, 868, 933, 968
BseYI	CCCAGC	1 cut(s)	156
BsgI	GTGCAG	2 cut(s)	411, 652
BshFI	GGCC	5 cut(s)	161, 302, 383, 512, 780
BshNI	GGYRCC	2 cut(s)	344, 863
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	132, 299
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	3 cut(s)	134, 827, 912
BsmAI	GTCTC	3 cut(s)	3, 99, 531
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	5 cut(s)	161, 302, 383, 512, 780
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	407, 460, 760
Bsp1720I	GCTNAGC	1 cut(s)	901
BspACI	CCGC	5 cut(s)	135, 162, 396, 732, 924
BspANI	GGCC	5 cut(s)	161, 302, 383, 512, 780
BspCNI	CTCAG	2 cut(s)	573, 914
BspLI	GGNNCC	4 cut(s)	126, 346, 832, 865
BspMI	ACCTGC	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	791
BspPI	GGATC	1 cut(s)	415
BspT107I	GGYRCC	2 cut(s)	344, 863
BsrDI	GCAATG	2 cut(s)	90, 945
BsrI	ACTGG	5 cut(s)	294, 328, 440, 707, 867
BssECI	CCNNGG	2 cut(s)	348, 951
BssMI	GATC	3 cut(s)	407, 460, 760
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	3 cut(s)	483, 876, 913
Bst4CI	ACNGT	2 cut(s)	215, 362
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	4 cut(s)	154, 381, 654, 789
BstDEI	CTNAG	2 cut(s)	560, 901
BstDSI	CCRYGG	1 cut(s)	951
BstEII	GGTNACC	3 cut(s)	185, 215, 643
BstKTI	GATC	3 cut(s)	410, 463, 763
BstMAI	GTCTC	3 cut(s)	3, 99, 531
BstMBI	GATC	3 cut(s)	407, 460, 760
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 158, 503, 509, 589, 777, 887, 956
BstNI	CCWGG	3 cut(s)	483, 876, 913
BstNSI	RCATGY	1 cut(s)	602
BstPAI	GACNNNNGTC	1 cut(s)	449
BstPI	GGTNACC	3 cut(s)	185, 215, 643
BstSCI	CCNGG	4 cut(s)	130, 481, 874, 911
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	5 cut(s)	92, 490, 868, 933, 968
BstXI	CCANNNNNNTGG	1 cut(s)	101
BsuRI	GGCC	5 cut(s)	161, 302, 383, 512, 780
BtgI	CCRYGG	1 cut(s)	951
BtgZI	GCGATG	1 cut(s)	501
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	6 cut(s)	321, 358, 447, 714, 766, 874
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	4 cut(s)	154, 381, 654, 789
CaiI	CAGNNNCTG	1 cut(s)	881
Cfr13I	GGNCC	5 cut(s)	159, 437, 510, 778, 872
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	331, 479
CviAII	CATG	5 cut(s)	95, 404, 577, 599, 887
CviQI	GTAC	2 cut(s)	331, 479
DdeI	CTNAG	2 cut(s)	560, 901
DpnI	GATC	3 cut(s)	409, 462, 762
DpnII	GATC	3 cut(s)	407, 460, 760
EaeI	YGGCCR	2 cut(s)	300, 381
Eco130I	CCWWGG	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	2 cut(s)	437, 872
Eco91I	GGTNACC	3 cut(s)	185, 215, 643
EcoO65I	GGTNACC	3 cut(s)	185, 215, 643
EcoRII	CCWGG	3 cut(s)	481, 874, 911
EcoRV	GATATC	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	98, 407, 580, 602, 890
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	5 cut(s)	94, 403, 576, 598, 886
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	7 cut(s)	81, 162, 504, 882, 922, 925, 957
Fsp4HI	GCNGC	7 cut(s)	81, 162, 504, 882, 922, 925, 957
FspBI	CTAG	3 cut(s)	44, 545, 788
GluI	GCNGC	7 cut(s)	81, 162, 504, 882, 922, 925, 957
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	5 cut(s)	161, 302, 383, 512, 780
HapII	CCGG	2 cut(s)	132, 299
HgaI	GACGC	1 cut(s)	589
Hin1II	CATG	5 cut(s)	98, 407, 580, 602, 890
HindIII	AAGCTT	1 cut(s)	246
HpaII	CCGG	2 cut(s)	132, 299
HphI	GGTGA	7 cut(s)	197, 227, 402, 470, 655, 746, 925
Hpy166II	GTNNAC	3 cut(s)	169, 694, 872
Hpy188I	TCNGA	2 cut(s)	536, 563
Hpy188III	TCNNGA	1 cut(s)	520
Hpy8I	GTNNAC	3 cut(s)	169, 694, 872
Hpy99I	CGWCG	2 cut(s)	455, 458
HpyAV	CCTTC	4 cut(s)	200, 728, 852, 946
HpyCH4III	ACNGT	2 cut(s)	215, 362
HpyCH4IV	ACGT	4 cut(s)	390, 450, 585, 798
HpyCH4V	TGCA	7 cut(s)	4, 152, 169, 261, 428, 576, 669
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 158, 503, 509, 589, 777, 887, 956
HpyF3I	CTNAG	2 cut(s)	560, 901
HpySE526I	ACGT	4 cut(s)	390, 450, 585, 798
Hsp92II	CATG	5 cut(s)	98, 407, 580, 602, 890
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	407, 460, 760
LmnI	GCTCC	3 cut(s)	421, 878, 895
Lsp1109I	GCAGC	5 cut(s)	92, 490, 868, 933, 968
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	3 cut(s)	44, 545, 788
MaeII	ACGT	4 cut(s)	390, 450, 585, 798
MaeIII	GTNAC	7 cut(s)	185, 215, 235, 391, 442, 643, 799
MalI	GATC	3 cut(s)	409, 462, 762
MboI	GATC	3 cut(s)	407, 460, 760
MboII	GAAGA	2 cut(s)	736, 955
MfeI	CAATTG	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	3 cut(s)	262, 464, 550
MluNI	TGGCCA	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	82, 514
MnlI	CCTC	5 cut(s)	138, 225, 428, 579, 856
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	1 cut(s)	795
MslI	CAYNNNNRTG	4 cut(s)	389, 597, 797, 950
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	2 cut(s)	732, 924
MspI	CCGG	2 cut(s)	132, 299
MspR9I	CCNGG	4 cut(s)	132, 483, 876, 913
MunI	CAATTG	1 cut(s)	464
MvaI	CCWGG	3 cut(s)	483, 876, 913
MwoI	GCNNNNNNNGC	8 cut(s)	44, 158, 503, 509, 589, 777, 887, 956
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	407, 460, 760
NheI	GCTAGC	1 cut(s)	787
NlaIII	CATG	5 cut(s)	98, 407, 580, 602, 890
NlaIV	GGNNCC	4 cut(s)	126, 346, 832, 865
NmuCI	GTSAC	7 cut(s)	185, 215, 235, 391, 442, 643, 799
NspI	RCATGY	1 cut(s)	602
PaqCI	CACCTGC	1 cut(s)	421
PciI	ACATGT	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfoI	TCCNGGA	1 cut(s)	911
PkrI	GCNGC	7 cut(s)	82, 163, 505, 883, 923, 926, 958
Ppu21I	YACGTR	1 cut(s)	586
PscI	ACATGT	1 cut(s)	598
PshAI	GACNNNNGTC	1 cut(s)	449
Psp6I	CCWGG	3 cut(s)	481, 874, 911
PspEI	GGTNACC	3 cut(s)	185, 215, 643
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	3 cut(s)	481, 874, 911
PspN4I	GGNNCC	4 cut(s)	126, 346, 832, 865
PspPI	GGNCC	5 cut(s)	159, 437, 510, 778, 872
PstNI	CAGNNNCTG	1 cut(s)	881
RsaI	GTAC	2 cut(s)	332, 480
RsaNI	GTAC	2 cut(s)	331, 479
RseI	CAYNNNNRTG	4 cut(s)	389, 597, 797, 950
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	7 cut(s)	81, 162, 504, 882, 922, 925, 957
Sau3AI	GATC	3 cut(s)	407, 460, 760
Sau96I	GGNCC	5 cut(s)	159, 437, 510, 778, 872
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	4 cut(s)	132, 483, 876, 913
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	1 cut(s)	601
SinI	GGWCC	2 cut(s)	437, 872
SmiMI	CAYNNNNRTG	4 cut(s)	389, 597, 797, 950
Sse9I	AATT	3 cut(s)	262, 464, 550
SsiI	CCGC	5 cut(s)	135, 162, 396, 732, 924
SspMI	CTAG	3 cut(s)	44, 545, 788
StyD4I	CCNGG	4 cut(s)	130, 481, 874, 911
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	215, 362
TaiI	ACGT	4 cut(s)	393, 453, 588, 801
TaqI	TCGA	2 cut(s)	252, 266
TasI	AATT	3 cut(s)	262, 464, 550
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	2 cut(s)	164, 927
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	6 cut(s)	328, 365, 447, 714, 773, 874
TseFI	GTSAC	7 cut(s)	185, 215, 235, 391, 442, 643, 799
TseI	GCWGC	5 cut(s)	80, 503, 881, 921, 956
Tsp45I	GTSAC	7 cut(s)	185, 215, 235, 391, 442, 643, 799
TspDTI	ATGAA	6 cut(s)	328, 504, 517, 675, 736, 934
TspRI	CASTG	6 cut(s)	328, 365, 447, 714, 773, 874
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	437, 872
XceI	RCATGY	1 cut(s)	602
XcmI	CCANNNNNNNNNTGG	3 cut(s)	82, 179, 614
XspI	CTAG	3 cut(s)	44, 545, 788
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.