Rroxscaffold_2G00153060

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005512
Physical Location & Seq
Forward (+)
89866617 .. 89869758
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153060.1

Sequence Viewer

Length: 1050 bp
ATGGCAAGGAACTTGAACATGGCTGTTTTCGCAGCCCTAGTGGCAGCTTTGGTAATTAGCTCTGTCTCAGCAGTCACTCATCAAGTCGGTGATGGTTTGGGCTGGAACATCCCTCCTGGTGGAGCTGTGGCTTACAGTACATGGTCCTCAAACAATACCTTTAAAGCAGGCGACATTCTTGTCTTTACATTTGGAAGCGGACAACACGACGTCGCAGAAGTGACCAAGGAAGCCTTCGATGCCTGCAATGCAACCGGTCCCATTTCCTTGAAAACCGACTCACCAGCAAACTTTACCCTTACTTCTGGAGAGCACTACTACATCTGTACCTTCAGTAACCACTGTAGTGCCGGACAGAAGTTGGCCGTCAACGTTACCGGAACTACCTCTTCCCCTTCTCCCGCTCCCAGCACCAGTCCTCCTACTTCGTCGCCGGCTCCAGTTCTTGCTCCAGAGCCAAGCAGCAGTGCTAGCCCCCCCCAGCTTCTGCCCCAGCACCAAGCCCCTCAGCTGGACCCACCACTTACACTGTCGGAGACACCGCCGGATGGAATGTTCTCGGCAACGATACTTACAGCACCTGGGCCTCTGACAAGACCTTCAGGGTTGGTGACCAAGACAAATTACGAGTCATGTGGCACCTCCAACACGCTCTCTCGCTACACAAACCCACCCGTCAGAATCACACTTAACACAACCGGCGAGCACTTCTTCATCTGCACTGTCGCCGGCCACTGCAACAACGGCCAGAAGCTCGCTATCACCGTTAAGGGCACCAGTACCACACCGACCTCCGCCCCCGCACCTTCTCCAGGCGGCCCAGCCCCTACTCCAAGCACTACTGCCACTCCACCAAGCACCGGTGCCACCCCACCAAGCGGCACCACCACTCCTTCCACCCCTCCACCCGCCGCTGACGTCACCCCACCACCATCACCTAATGCCGCGACATCTCTTGGCGTTGCTGGCCTATCCGCCACCTTCTTGTCCATTGCTAACAGGGCAGATCGACAAACTGAAGAAACACATATACCTGAAGGGAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

349

Amino Acids

35.38

Weight (kDa)

5.86

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 119 2.6e-21 Plastocyanin-like domain
Cu_bind_like PF02298 204 - 250 3.2e-11 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 2 cut(s) 213, 921
AccB1I GGYRCC 4 cut(s) 638, 773, 863, 881
AccBSI CCGCTC 1 cut(s) 404
AccII CGCG 1 cut(s) 947
AclI AACGTT 1 cut(s) 372
AcoI YGGCCR 3 cut(s) 363, 730, 745
AcuI CTGAAG 3 cut(s) 316, 585, 1038
AcyI GRCGYC 2 cut(s) 210, 918
AfaI GTAC 3 cut(s) 139, 328, 781
AfiI CCNNNNNNNGG 6 cut(s) 119, 511, 548, 812, 860, 878
AgeI ACCGGT 2 cut(s) 254, 860
AgsI TTSAA 2 cut(s) 16, 271
AjnI CCWGG 3 cut(s) 115, 580, 811
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AleI CACNNNNGTG 1 cut(s) 345
AloI GAACNNNNNNTCC 2 cut(s) 539, 571
AluBI AGCT 6 cut(s) 47, 60, 125, 484, 511, 754
AluI AGCT 6 cut(s) 47, 60, 125, 484, 511, 754
Alw21I GWGCWC 2 cut(s) 315, 708
Alw26I GTCTC 2 cut(s) 70, 530
AlwNI CAGNNNCTG 2 cut(s) 487, 581
AoxI GGCC 6 cut(s) 363, 584, 730, 745, 817, 967
ApeKI GCWGC 3 cut(s) 32, 44, 462
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AsiGI ACCGGT 2 cut(s) 254, 860
AspS9I GGNCC 5 cut(s) 144, 257, 514, 584, 818
AsuHPI GGTGA 6 cut(s) 101, 273, 622, 754, 913, 927
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 3 cut(s) 144, 257, 514
BaeGI GKGCMC 1 cut(s) 776
BaeI ACNNNNGTAYC 2 cut(s) 310, 343
BanI GGYRCC 4 cut(s) 638, 773, 863, 881
Bbv12I GWGCWC 2 cut(s) 315, 708
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 44, 56, 474
BccI CCATC 3 cut(s) 86, 542, 940
BceAI ACGGC 2 cut(s) 350, 760
BciT130I CCWGG 3 cut(s) 117, 582, 813
BcoDI GTCTC 2 cut(s) 70, 530
BfaI CTAG 2 cut(s) 38, 471
BfmI CTRYAG 1 cut(s) 343
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 7 cut(s) 33, 45, 463, 817, 880, 912, 945
BlsI GCNGC 7 cut(s) 34, 46, 464, 818, 881, 913, 946
Bme1390I CCNGG 3 cut(s) 117, 582, 813
Bme18I GGWCC 3 cut(s) 144, 257, 514
BmgT120I GGNCC 5 cut(s) 144, 257, 514, 584, 818
BmiI GGNNCC 7 cut(s) 259, 438, 516, 640, 775, 865, 883
BmrFI CCNGG 3 cut(s) 117, 582, 813
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 474
BpmI CTGGAG 4 cut(s) 327, 423, 435, 795
Bpu10I CCTNAGC 1 cut(s) 507
BsaHI GRCGYC 2 cut(s) 210, 918
BsaJI CCNNGG 2 cut(s) 225, 581
BsaWI WCCGGW 3 cut(s) 254, 377, 860
BsaXI ACNNNNNCTCC 6 cut(s) 403, 433, 832, 862, 874, 904
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 511, 548, 812, 860, 878
Bse118I RCCGGY 5 cut(s) 254, 433, 698, 728, 860
Bse1I ACTGG 3 cut(s) 414, 440, 777
Bse3DI GCAATG 2 cut(s) 253, 990
BseBI CCWGG 3 cut(s) 117, 582, 813
BseDI CCNNGG 2 cut(s) 225, 581
BseGI GGATG 2 cut(s) 108, 553
BseLI CCNNNNNNNGG 6 cut(s) 119, 511, 548, 812, 860, 878
BseMI GCAATG 2 cut(s) 253, 990
BseMII CTCAG 2 cut(s) 81, 521
BseNI ACTGG 3 cut(s) 414, 440, 777
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 3 cut(s) 44, 56, 474
BseYI CCCAGC 4 cut(s) 407, 480, 492, 820
BsgI GTGCAG 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 947
BshFI GGCC 6 cut(s) 365, 586, 732, 747, 819, 969
BshNI GGYRCC 4 cut(s) 638, 773, 863, 881
BshTI ACCGGT 2 cut(s) 254, 860
BsiHKAI GWGCWC 2 cut(s) 315, 708
BsiSI CCGG 8 cut(s) 255, 351, 378, 434, 545, 699, 729, 861
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 6 cut(s) 119, 511, 548, 812, 860, 878
BsmAI GTCTC 2 cut(s) 70, 530
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 6 cut(s) 365, 586, 732, 747, 819, 969
Bsp1286I GDGCHC 3 cut(s) 315, 708, 776
Bsp143I GATC 1 cut(s) 1006
BspANI GGCC 6 cut(s) 365, 586, 732, 747, 819, 969
BspCNI CTCAG 2 cut(s) 80, 520
BspFNI CGCG 1 cut(s) 947
BspLI GGNNCC 7 cut(s) 259, 438, 516, 640, 775, 865, 883
BspOI GCTAGC 1 cut(s) 474
BspT107I GGYRCC 4 cut(s) 638, 773, 863, 881
BsrBI CCGCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 253, 990
BsrFI RCCGGY 5 cut(s) 254, 433, 698, 728, 860
BsrI ACTGG 3 cut(s) 414, 440, 777
BssAI RCCGGY 5 cut(s) 254, 433, 698, 728, 860
BssECI CCNNGG 2 cut(s) 225, 581
BssMI GATC 1 cut(s) 1006
BssNI GRCGYC 2 cut(s) 210, 918
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 3 cut(s) 117, 582, 813
Bst4CI ACNGT 5 cut(s) 137, 344, 531, 724, 766
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 2 cut(s) 210, 918
BstC8I GCNNGC 8 cut(s) 169, 244, 435, 472, 704, 730, 756, 967
BstDEI CTNAG 2 cut(s) 67, 507
BstEII GGTNACC 1 cut(s) 610
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 2 cut(s) 108, 553
BstFNI CGCG 1 cut(s) 947
BstKTI GATC 1 cut(s) 1009
BstMAI GTCTC 2 cut(s) 70, 530
BstMBI GATC 1 cut(s) 1006
BstMWI GCNNNNNNNGC 8 cut(s) 29, 41, 239, 248, 471, 744, 966, 1001
BstNI CCWGG 3 cut(s) 117, 582, 813
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 115, 580, 811
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 776
BstUI CGCG 1 cut(s) 947
BstV1I GCAGC 3 cut(s) 44, 56, 474
BsuRI GGCC 6 cut(s) 365, 586, 732, 747, 819, 969
BtsCI GGATG 2 cut(s) 108, 553
BtsI GCAGTG 2 cut(s) 472, 733
BtsIMutI CAGTG 5 cut(s) 340, 472, 527, 720, 733
Cac8I GCNNGC 8 cut(s) 169, 244, 435, 472, 704, 730, 756, 967
CaiI CAGNNNCTG 2 cut(s) 487, 581
Cfr10I RCCGGY 5 cut(s) 254, 433, 698, 728, 860
Cfr13I GGNCC 5 cut(s) 144, 257, 514, 584, 818
Csp6I GTAC 3 cut(s) 138, 327, 780
CspAI ACCGGT 2 cut(s) 254, 860
CviAII CATG 3 cut(s) 19, 141, 633
CviQI GTAC 3 cut(s) 138, 327, 780
DdeI CTNAG 2 cut(s) 67, 507
DpnI GATC 1 cut(s) 1008
DpnII GATC 1 cut(s) 1006
DraI TTTAAA 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 3 cut(s) 363, 730, 745
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
EciI GGCGGA 2 cut(s) 784, 964
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 3 cut(s) 144, 257, 514
Eco57I CTGAAG 3 cut(s) 316, 585, 1038
Eco91I GGTNACC 1 cut(s) 610
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoO65I GGTNACC 1 cut(s) 610
EcoRII CCWGG 3 cut(s) 115, 580, 811
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 3 cut(s) 22, 144, 636
FaiI YATR 5 cut(s) 20, 142, 634, 1029, 1031
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 18, 140, 632
FauI CCCGC 3 cut(s) 409, 808, 916
Fnu4HI GCNGC 7 cut(s) 33, 45, 463, 817, 880, 912, 945
FokI GGATG 2 cut(s) 95, 560
Fsp4HI GCNGC 7 cut(s) 33, 45, 463, 817, 880, 912, 945
FspBI CTAG 2 cut(s) 38, 471
GluI GCNGC 7 cut(s) 33, 45, 463, 817, 880, 912, 945
GsaI CCCAGC 4 cut(s) 411, 484, 496, 824
GsuI CTGGAG 4 cut(s) 327, 423, 435, 795
HaeIII GGCC 6 cut(s) 365, 586, 732, 747, 819, 969
HapII CCGG 8 cut(s) 255, 351, 378, 434, 545, 699, 729, 861
Hin1I GRCGYC 2 cut(s) 210, 918
Hin1II CATG 3 cut(s) 22, 144, 636
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 3 cut(s) 278, 629, 681
HpaII CCGG 8 cut(s) 255, 351, 378, 434, 545, 699, 729, 861
HphI GGTGA 6 cut(s) 101, 273, 622, 754, 913, 927
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 535, 591, 680
Hpy188III TCNNGA 2 cut(s) 306, 452
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 3 cut(s) 212, 215, 433
HpyAV CCTTC 8 cut(s) 244, 340, 405, 609, 816, 903, 991, 1031
HpyCH4III ACNGT 5 cut(s) 137, 344, 531, 724, 766
HpyCH4IV ACGT 3 cut(s) 210, 372, 918
HpyCH4V TGCA 4 cut(s) 246, 251, 720, 738
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 41, 239, 248, 471, 744, 966, 1001
HpyF3I CTNAG 2 cut(s) 67, 507
HpySE526I ACGT 3 cut(s) 210, 372, 918
Hsp92I GRCGYC 2 cut(s) 210, 918
Hsp92II CATG 3 cut(s) 22, 144, 636
KroI GCCGGC 2 cut(s) 433, 728
KroNI GCCGGC 2 cut(s) 435, 730
Kzo9I GATC 1 cut(s) 1006
LmnI GCTCC 4 cut(s) 122, 409, 442, 454
Lsp1109I GCAGC 3 cut(s) 44, 56, 474
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 38, 471
MaeII ACGT 3 cut(s) 210, 372, 918
MaeIII GTNAC 6 cut(s) 73, 220, 335, 373, 610, 919
MalI GATC 1 cut(s) 1008
MbiI CCGCTC 1 cut(s) 404
MboI GATC 1 cut(s) 1006
MboII GAAGA 3 cut(s) 381, 703, 1031
MhlI GDGCHC 3 cut(s) 315, 708, 776
MluCI AATT 2 cut(s) 54, 622
MlyI GAGTC 2 cut(s) 272, 638
MmeI TCCRAC 2 cut(s) 513, 669
MnlI CCTC 9 cut(s) 123, 157, 397, 429, 516, 597, 652, 802, 912
MroNI GCCGGC 2 cut(s) 433, 728
MseI TTAA 3 cut(s) 162, 690, 768
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 511, 914
MspI CCGG 8 cut(s) 255, 351, 378, 434, 545, 699, 729, 861
MspR9I CCNGG 3 cut(s) 117, 582, 813
MvaI CCWGG 3 cut(s) 117, 582, 813
MvnI CGCG 1 cut(s) 947
MwoI GCNNNNNNNGC 8 cut(s) 29, 41, 239, 248, 471, 744, 966, 1001
NaeI GCCGGC 2 cut(s) 435, 730
NdeII GATC 1 cut(s) 1006
NgoMIV GCCGGC 2 cut(s) 433, 728
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 3 cut(s) 22, 144, 636
NlaIV GGNNCC 7 cut(s) 259, 438, 516, 640, 775, 865, 883
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 4 cut(s) 73, 220, 610, 919
OliI CACNNNNGTG 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PdiI GCCGGC 2 cut(s) 435, 730
PfeI GAWTC 1 cut(s) 681
PinAI ACCGGT 2 cut(s) 254, 860
PkrI GCNGC 7 cut(s) 34, 46, 464, 818, 881, 913, 946
PleI GAGTC 2 cut(s) 272, 637
PpsI GAGTC 2 cut(s) 272, 637
Psp1406I AACGTT 1 cut(s) 372
Psp6I CCWGG 3 cut(s) 115, 580, 811
PspEI GGTNACC 1 cut(s) 610
PspFI CCCAGC 4 cut(s) 407, 480, 492, 820
PspGI CCWGG 3 cut(s) 115, 580, 811
PspN4I GGNNCC 7 cut(s) 259, 438, 516, 640, 775, 865, 883
PspPI GGNCC 5 cut(s) 144, 257, 514, 584, 818
PstNI CAGNNNCTG 2 cut(s) 487, 581
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 3 cut(s) 139, 328, 781
RsaNI GTAC 3 cut(s) 138, 327, 780
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 3 cut(s) 162, 690, 768
SatI GCNGC 7 cut(s) 33, 45, 463, 817, 880, 912, 945
Sau3AI GATC 1 cut(s) 1006
Sau96I GGNCC 5 cut(s) 144, 257, 514, 584, 818
SchI GAGTC 2 cut(s) 272, 638
ScrFI CCNGG 3 cut(s) 117, 582, 813
SduI GDGCHC 3 cut(s) 315, 708, 776
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 343
SgrAI CRCCGGYG 1 cut(s) 860
SinI GGWCC 3 cut(s) 144, 257, 514
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 2 cut(s) 54, 622
SspMI CTAG 2 cut(s) 38, 471
StyD4I CCNGG 3 cut(s) 115, 580, 811
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 5 cut(s) 137, 344, 531, 724, 766
TaiI ACGT 3 cut(s) 213, 375, 921
TaqI TCGA 2 cut(s) 237, 1009
TasI AATT 2 cut(s) 54, 622
TatI WGTACW 1 cut(s) 137
TauI GCSGC 4 cut(s) 819, 882, 914, 947
TfiI GAWTC 1 cut(s) 681
Tru1I TTAA 3 cut(s) 162, 690, 768
Tru9I TTAA 3 cut(s) 162, 690, 768
TscAI CASTG 5 cut(s) 347, 472, 534, 727, 740
TseFI GTSAC 4 cut(s) 73, 220, 610, 919
TseI GCWGC 3 cut(s) 32, 44, 462
Tsp45I GTSAC 4 cut(s) 73, 220, 610, 919
TspDTI ATGAA 1 cut(s) 703
TspRI CASTG 5 cut(s) 347, 472, 534, 727, 740
VpaK11BI GGWCC 3 cut(s) 144, 257, 514
XagI CCTNNNNNAGG 1 cut(s) 810
XspI CTAG 2 cut(s) 38, 471
ZraI GACGTC 2 cut(s) 211, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.