Rw2G002770

Blue copper protein-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
2456436 .. 2458618
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002770.1

Sequence Viewer

Length: 1302 bp
ATGGGTAGTGAACTCAAATATTTCGCCGTTCTAGCCATAACAGTGGCTGCCCTCCTTCACTCCACAGCAGCAATAGAAACCCACGTCGTTGGAGATGAATTCGGATGGATTGTTCCTCCCGGAGGTCATTACGCTTACGAAGCCTGGGCTTCCGGGCACAAATTCTCCGTCGGCGACATTCTTGAGTTCAACTTCACGACTGGTGACCAGGACGTAGCCATGGTTACAAAGGAAGCTTTCGATAGCTGCAATTCCACAAGCCCCATCGAGCTTAAAACAACTGGTCCGGCCAATTTCACATTGGATAGGATTGGGTCGTACTATTTCATTGGAACCATGGACAAGCACTGCGGGTTGGGACAGAAGCTAGCCATCAACGTGACTGCTCATTCTGGATCACCAACTCCAAGCCCTTCACCTAAACCTAGTCCTACACCAAGAGGCCCTGTGACTTACGTCGTCGGCGATCATTTTGGATGGATTGTCCCACCGGGCGGTGAACTTGCTTATTCTGCTTGGGCTTACGGCAAGACTTTCTATGTTGGTGACACTCTAGAGTTCAACTTCACAACCGGAGATCAAGATGTAGCCATGGTCACAAAACAAGCTTACGAAAGCTGCAATTTTAATAAATCCCAGATCATAATATTAACAACTGGACCGGCCTATATCAAGCTGAATCTCACAGGCGAGTATTACTTCATTGGCACCATGGATAAGCACTGCGAATTGGGACAAAAGCTAGCCATCAACGTGACTGCAAATCCTGGTGGCCCTTCAGCCTCCCCTACTCCTGCTCCTGCTCCTTCTCCTAGAGGTCCAGCGATTTACATCGTCGGCGATCAATTGGGTTGGTTTGTGCCCGGTAAATATGATTATTCTGCTTGGGCAAACGGCAAAACTTTTATCGTTGGAGACACGCTAGTTTTCAACTTCATCAACGGGACACAAGATGTAGCTGTCGTTACCAAGGCTGTTTTTGACAACTGCACCACCAATAGCACCCTAGCTGTTTTTAAAAATAGTCCGGTGAACATCATCCTCAACACCACCGGTGAACACTACTTCACATCCACCTACGATCGCCACTGCGAATTGGGACAGAAGCTAGCGATTAACGTGACTGCCAAGAGCACAGGAACGGCCACTTCTCCCTCGAGCTCCACAACGCCTTCTTCACATGCTCCGTCAGCTCATTCCCCGGCCGCTTCTGCTCCATACAGCTCTGCCACCCCTTCCACCATTAATGGCAGTGGCTACTTCTTCACCTTCTTGCTCATTGGATTGGCTTTCTTCCATTGA

Protein Analysis

433

Amino Acids

46.11

Weight (kDa)

5.77

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 44 - 121 1.5e-19 Plastocyanin-like domain
Cu_bind_like PF02298 168 - 246 4.2e-20 Plastocyanin-like domain
Cu_bind_like PF02298 285 - 368 2.7e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 707
AciI CCGC 3 cut(s) 351, 495, 1206
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 3 cut(s) 288, 1143, 1203
AcsI RAATTY 2 cut(s) 98, 161
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 122, 494
AgeI ACCGGT 1 cut(s) 1052
AgsI TTSAA 3 cut(s) 190, 562, 931
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 3 cut(s) 143, 207, 766
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
Alw21I GWGCWC 2 cut(s) 1136, 1163
Alw26I GTCTC 1 cut(s) 909
AlwI GGATC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 1156
AoxI GGCC 6 cut(s) 288, 442, 663, 772, 1143, 1203
ApeKI GCWGC 4 cut(s) 47, 68, 246, 618
ApoI RAATTY 2 cut(s) 98, 161
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AseI ATTAAT 1 cut(s) 1245
AsiGI ACCGGT 1 cut(s) 1052
AspS9I GGNCC 5 cut(s) 284, 443, 659, 773, 818
AsuC2I CCSGG 5 cut(s) 120, 154, 492, 864, 1202
AsuHPI GGTGA 8 cut(s) 215, 390, 408, 509, 557, 1042, 1067, 1258
AsuNHI GCTAGC 3 cut(s) 367, 742, 1108
AvaI CYCGRG 1 cut(s) 1156
AvaII GGWCC 3 cut(s) 284, 659, 818
BaeGI GKGCMC 2 cut(s) 159, 864
BanI GGYRCC 1 cut(s) 707
BanII GRGCYC 1 cut(s) 1163
Bbv12I GWGCWC 2 cut(s) 1136, 1163
BbvI GCAGC 4 cut(s) 34, 80, 233, 605
BccI CCATC 5 cut(s) 99, 272, 380, 471, 755
BceAI ACGGC 4 cut(s) 11, 541, 910, 1158
BciT130I CCWGG 3 cut(s) 145, 209, 768
BcnI CCSGG 5 cut(s) 120, 154, 492, 864, 1202
BcoDI GTCTC 1 cut(s) 909
BfaI CTAG 9 cut(s) 32, 368, 426, 554, 743, 813, 923, 1007, 1109
BisI GCNGC 5 cut(s) 48, 69, 247, 619, 1206
BlsI GCNGC 5 cut(s) 49, 70, 248, 620, 1207
Bme1390I CCNGG 8 cut(s) 120, 145, 154, 209, 492, 768, 864, 1202
Bme18I GGWCC 3 cut(s) 284, 659, 818
BmeT110I CYCGRG 1 cut(s) 1156
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 5 cut(s) 284, 443, 659, 773, 818
BmiI GGNNCC 2 cut(s) 334, 709
BmrFI CCNGG 8 cut(s) 120, 145, 154, 209, 492, 768, 864, 1202
BmtI GCTAGC 3 cut(s) 371, 746, 1112
BoxI GACNNNNGTC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 5 cut(s) 120, 154, 492, 864, 1202
BsaBI GATNNNNATC 1 cut(s) 830
BsaJI CCNNGG 7 cut(s) 144, 219, 336, 591, 711, 969, 1200
BsaWI WCCGGW 3 cut(s) 572, 1027, 1052
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 781, 811
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 494
Bse118I RCCGGY 2 cut(s) 661, 1052
Bse1I ACTGG 3 cut(s) 205, 286, 661
Bse8I GATNNNNATC 1 cut(s) 830
BseBI CCWGG 3 cut(s) 145, 209, 768
BseDI CCNNGG 7 cut(s) 144, 219, 336, 591, 711, 969, 1200
BseGI GGATG 4 cut(s) 110, 482, 1038, 1070
BseJI GATNNNNATC 1 cut(s) 830
BseLI CCNNNNNNNGG 2 cut(s) 122, 494
BseNI ACTGG 3 cut(s) 205, 286, 661
BseSI GKGCMC 2 cut(s) 159, 864
BseX3I CGGCCG 1 cut(s) 1203
BseXI GCAGC 4 cut(s) 34, 80, 233, 605
BsgI GTGCAG 1 cut(s) 973
Bsh1285I CGRYCG 2 cut(s) 1084, 1206
BshFI GGCC 6 cut(s) 290, 444, 665, 774, 1145, 1205
BshNI GGYRCC 1 cut(s) 707
BshTI ACCGGT 1 cut(s) 1052
BsiEI CGRYCG 2 cut(s) 1084, 1206
BsiHKAI GWGCWC 2 cut(s) 1136, 1163
BsiHKCI CYCGRG 1 cut(s) 1156
BslFI GGGAC 5 cut(s) 372, 470, 747, 958, 1113
BslI CCNNNNNNNGG 2 cut(s) 122, 494
BsmAI GTCTC 1 cut(s) 909
BsmFI GGGAC 5 cut(s) 372, 470, 747, 958, 1113
BsnI GGCC 6 cut(s) 290, 444, 665, 774, 1145, 1205
BsoBI CYCGRG 1 cut(s) 1156
Bsp1286I GDGCHC 4 cut(s) 159, 864, 1136, 1163
Bsp143I GATC 6 cut(s) 395, 466, 577, 639, 841, 1081
Bsp19I CCATGG 4 cut(s) 219, 336, 591, 711
BspACI CCGC 3 cut(s) 351, 495, 1206
BspANI GGCC 6 cut(s) 290, 444, 665, 774, 1145, 1205
BspLI GGNNCC 2 cut(s) 334, 709
BspOI GCTAGC 3 cut(s) 371, 746, 1112
BspPI GGATC 1 cut(s) 403
BspT107I GGYRCC 1 cut(s) 707
BsrFI RCCGGY 2 cut(s) 661, 1052
BsrI ACTGG 3 cut(s) 205, 286, 661
BssAI RCCGGY 2 cut(s) 661, 1052
BssECI CCNNGG 7 cut(s) 144, 219, 336, 591, 711, 969, 1200
BssMI GATC 6 cut(s) 395, 466, 577, 639, 841, 1081
BssT1I CCWWGG 5 cut(s) 219, 336, 591, 711, 969
Bst2UI CCWGG 3 cut(s) 145, 209, 768
Bst4CI ACNGT 1 cut(s) 43
BstC8I GCNNGC 3 cut(s) 369, 744, 1110
BstDSI CCRYGG 4 cut(s) 219, 336, 591, 711
BstEII GGTNACC 1 cut(s) 203
BstENI CCTNNNNNAGG 1 cut(s) 120
BstF5I GGATG 4 cut(s) 110, 482, 1038, 1070
BstKTI GATC 6 cut(s) 398, 469, 580, 642, 844, 1084
BstMAI GTCTC 1 cut(s) 909
BstMBI GATC 6 cut(s) 395, 466, 577, 639, 841, 1081
BstMCI CGRYCG 2 cut(s) 1084, 1206
BstMWI GCNNNNNNNGC 5 cut(s) 32, 140, 512, 1190, 1211
BstNI CCWGG 3 cut(s) 145, 209, 768
BstNSI RCATGY 1 cut(s) 1184
BstPAI GACNNNNGTC 1 cut(s) 455
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 8 cut(s) 118, 143, 152, 207, 490, 766, 862, 1200
BstSLI GKGCMC 2 cut(s) 159, 864
BstV1I GCAGC 4 cut(s) 34, 80, 233, 605
BstXI CCANNNNNNTGG 2 cut(s) 43, 89
BstZI CGGCCG 1 cut(s) 1203
BsuRI GGCC 6 cut(s) 290, 444, 665, 774, 1145, 1205
BtgI CCRYGG 4 cut(s) 219, 336, 591, 711
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 4 cut(s) 110, 482, 1038, 1070
BtsI GCAGTG 4 cut(s) 346, 721, 1087, 1258
BtsIMutI CAGTG 5 cut(s) 48, 346, 721, 1087, 1258
Cac8I GCNNGC 3 cut(s) 369, 744, 1110
CaiI CAGNNNCTG 1 cut(s) 47
Cfr10I RCCGGY 2 cut(s) 661, 1052
Cfr13I GGNCC 5 cut(s) 284, 443, 659, 773, 818
Csp6I GTAC 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 1052
CviAII CATG 5 cut(s) 220, 337, 592, 712, 1181
CviQI GTAC 1 cut(s) 319
DpnI GATC 6 cut(s) 397, 468, 579, 641, 843, 1083
DpnII GATC 6 cut(s) 395, 466, 577, 639, 841, 1081
DraI TTTAAA 1 cut(s) 1018
EaeI YGGCCR 3 cut(s) 288, 1143, 1203
EagI CGGCCG 1 cut(s) 1203
Ecl136II GAGCTC 1 cut(s) 1161
EclXI CGGCCG 1 cut(s) 1203
Eco130I CCWWGG 5 cut(s) 219, 336, 591, 711, 969
Eco24I GRGCYC 1 cut(s) 1163
Eco47I GGWCC 3 cut(s) 284, 659, 818
Eco52I CGGCCG 1 cut(s) 1203
Eco53kI GAGCTC 1 cut(s) 1161
Eco57I CTGAAG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 1156
Eco91I GGTNACC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 1161
EcoNI CCTNNNNNAGG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 98
EcoRII CCWGG 3 cut(s) 143, 207, 766
EcoT14I CCWWGG 5 cut(s) 219, 336, 591, 711, 969
EcoT38I GRGCYC 1 cut(s) 1163
ErhI CCWWGG 5 cut(s) 219, 336, 591, 711, 969
FaeI CATG 5 cut(s) 223, 340, 595, 715, 1184
FaqI GGGAC 5 cut(s) 372, 470, 747, 958, 1113
FatI CATG 5 cut(s) 219, 336, 591, 711, 1180
FauI CCCGC 1 cut(s) 344
Fnu4HI GCNGC 5 cut(s) 48, 69, 247, 619, 1206
FokI GGATG 4 cut(s) 117, 489, 1025, 1057
FriOI GRGCYC 1 cut(s) 1163
Fsp4HI GCNGC 5 cut(s) 48, 69, 247, 619, 1206
FspBI CTAG 9 cut(s) 32, 368, 426, 554, 743, 813, 923, 1007, 1109
GluI GCNGC 5 cut(s) 48, 69, 247, 619, 1206
HaeIII GGCC 6 cut(s) 290, 444, 665, 774, 1145, 1205
Hin1II CATG 5 cut(s) 223, 340, 595, 715, 1184
HindIII AAGCTT 2 cut(s) 234, 606
HinfI GANTC 1 cut(s) 679
HphI GGTGA 8 cut(s) 215, 390, 408, 509, 557, 1042, 1067, 1258
Hpy166II GTNNAC 4 cut(s) 11, 500, 1033, 1058
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 5 cut(s) 182, 196, 393, 554, 581
Hpy8I GTNNAC 4 cut(s) 11, 500, 1033, 1058
Hpy99I CGWCG 5 cut(s) 89, 173, 461, 464, 839
HpyAV CCTTC 7 cut(s) 65, 423, 786, 816, 1182, 1245, 1279
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 6 cut(s) 84, 213, 378, 456, 753, 1119
HpyCH4V TGCA 4 cut(s) 249, 621, 761, 990
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 140, 512, 1190, 1211
HpySE526I ACGT 6 cut(s) 84, 213, 378, 456, 753, 1119
Hsp92II CATG 5 cut(s) 223, 340, 595, 715, 1184
Kzo9I GATC 6 cut(s) 395, 466, 577, 639, 841, 1081
LmnI GCTCC 5 cut(s) 802, 808, 1166, 1189, 1219
Lsp1109I GCAGC 4 cut(s) 34, 80, 233, 605
MaeI CTAG 9 cut(s) 32, 368, 426, 554, 743, 813, 923, 1007, 1109
MaeII ACGT 6 cut(s) 84, 213, 378, 456, 753, 1119
MaeIII GTNAC 9 cut(s) 203, 223, 379, 448, 545, 595, 754, 964, 1120
MalI GATC 6 cut(s) 397, 468, 579, 641, 843, 1083
MboI GATC 6 cut(s) 395, 466, 577, 639, 841, 1081
MboII GAAGA 3 cut(s) 1167, 1255, 1285
MfeI CAATTG 1 cut(s) 845
MhlI GDGCHC 4 cut(s) 159, 864, 1136, 1163
MluCI AATT 8 cut(s) 98, 161, 250, 292, 622, 728, 845, 1094
MmeI TCCRAC 2 cut(s) 70, 892
MnlI CCTC 8 cut(s) 62, 116, 126, 434, 793, 809, 1052, 1165
MseI TTAA 6 cut(s) 273, 627, 650, 1017, 1116, 1245
MslI CAYNNNNRTG 3 cut(s) 41, 377, 752
MspR9I CCNGG 8 cut(s) 120, 145, 154, 209, 492, 768, 864, 1202
MunI CAATTG 1 cut(s) 845
MvaI CCWGG 3 cut(s) 145, 209, 768
MwoI GCNNNNNNNGC 5 cut(s) 32, 140, 512, 1190, 1211
NciI CCSGG 5 cut(s) 120, 154, 492, 864, 1202
NcoI CCATGG 4 cut(s) 219, 336, 591, 711
NdeII GATC 6 cut(s) 395, 466, 577, 639, 841, 1081
NheI GCTAGC 3 cut(s) 367, 742, 1108
NlaIII CATG 5 cut(s) 223, 340, 595, 715, 1184
NlaIV GGNNCC 2 cut(s) 334, 709
NmuCI GTSAC 7 cut(s) 203, 379, 448, 545, 595, 754, 1120
NspI RCATGY 1 cut(s) 1184
PaeR7I CTCGAG 1 cut(s) 1156
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PfeI GAWTC 1 cut(s) 679
PfoI TCCNGGA 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 1052
PkrI GCNGC 5 cut(s) 49, 70, 248, 620, 1207
Ple19I CGATCG 1 cut(s) 1084
PshAI GACNNNNGTC 1 cut(s) 455
PshBI ATTAAT 1 cut(s) 1245
Psp124BI GAGCTC 1 cut(s) 1163
Psp6I CCWGG 3 cut(s) 143, 207, 766
PspEI GGTNACC 1 cut(s) 203
PspGI CCWGG 3 cut(s) 143, 207, 766
PspN4I GGNNCC 2 cut(s) 334, 709
PspPI GGNCC 5 cut(s) 284, 443, 659, 773, 818
PspXI VCTCGAGB 1 cut(s) 1156
PstNI CAGNNNCTG 1 cut(s) 47
PvuI CGATCG 1 cut(s) 1084
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 3 cut(s) 41, 377, 752
SacI GAGCTC 1 cut(s) 1163
SaqAI TTAA 6 cut(s) 273, 627, 650, 1017, 1116, 1245
SatI GCNGC 5 cut(s) 48, 69, 247, 619, 1206
Sau3AI GATC 6 cut(s) 395, 466, 577, 639, 841, 1081
Sau96I GGNCC 5 cut(s) 284, 443, 659, 773, 818
ScrFI CCNGG 8 cut(s) 120, 145, 154, 209, 492, 768, 864, 1202
SduI GDGCHC 4 cut(s) 159, 864, 1136, 1163
Sfr274I CTCGAG 1 cut(s) 1156
SgrAI CRCCGGYG 1 cut(s) 1052
SinI GGWCC 3 cut(s) 284, 659, 818
SlaI CTCGAG 1 cut(s) 1156
SmiMI CAYNNNNRTG 3 cut(s) 41, 377, 752
SmlI CTYRAG 2 cut(s) 182, 1156
SmoI CTYRAG 2 cut(s) 182, 1156
Sse9I AATT 8 cut(s) 98, 161, 250, 292, 622, 728, 845, 1094
SsiI CCGC 3 cut(s) 351, 495, 1206
SspI AATATT 2 cut(s) 20, 648
SspMI CTAG 9 cut(s) 32, 368, 426, 554, 743, 813, 923, 1007, 1109
SstI GAGCTC 1 cut(s) 1163
StyD4I CCNGG 8 cut(s) 118, 143, 152, 207, 490, 766, 862, 1200
StyI CCWWGG 5 cut(s) 219, 336, 591, 711, 969
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 6 cut(s) 87, 216, 381, 459, 756, 1122
TaqI TCGA 3 cut(s) 240, 267, 1157
TasI AATT 8 cut(s) 98, 161, 250, 292, 622, 728, 845, 1094
TauI GCSGC 1 cut(s) 1208
TfiI GAWTC 1 cut(s) 679
Tru1I TTAA 6 cut(s) 273, 627, 650, 1017, 1116, 1245
Tru9I TTAA 6 cut(s) 273, 627, 650, 1017, 1116, 1245
TscAI CASTG 5 cut(s) 48, 353, 728, 1094, 1258
TseFI GTSAC 7 cut(s) 203, 379, 448, 545, 595, 754, 1120
TseI GCWGC 4 cut(s) 47, 68, 246, 618
Tsp45I GTSAC 7 cut(s) 203, 379, 448, 545, 595, 754, 1120
TspDTI ATGAA 4 cut(s) 111, 316, 691, 925
TspGWI ACGGA 2 cut(s) 157, 1176
TspRI CASTG 5 cut(s) 48, 353, 728, 1094, 1258
VpaK11BI GGWCC 3 cut(s) 284, 659, 818
VspI ATTAAT 1 cut(s) 1245
XagI CCTNNNNNAGG 1 cut(s) 120
XapI RAATTY 2 cut(s) 98, 161
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 1184
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XhoI CTCGAG 1 cut(s) 1156
XspI CTAG 9 cut(s) 32, 368, 426, 554, 743, 813, 923, 1007, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.