RLG00000015918

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005512
Physical Location & Seq
Reverse (-)
2422984 .. 2423997
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015918

Sequence Viewer

Length: 654 bp
ATGAGTCCTCCTACTTCGTCGCCGGCTCCGGTTCATGCTCCAGAGCCAAGCAGCAGTGCTAGCCCCCCCGCACCTTCTGCCCCAGCACCAAGCCCCTCAGCTGGACCCACCACTTACACTGTCGGAGACACCGCCGGATGGAATGTTATCGGCAACGATACTTACAGCACCTGGGCCTCTAACAAGACCTTCATTGTTGGTGACATTCTAGTGTTCAACTTCTTGAATGGATCACACAACGTGGCTGAGGTGACCAAGACAAATTATGAGTCATGTGGCACCTCCAACAGACTCTCTTTCTACACAAACCCACCCGTCAGAATCACACTGAACACAACCGGCGAGCACTTCTTCATCTGCACTATCCCCACCCACTGCAACAACGGCCAGAAGCTTGCTGTCACCGTTAAGGGCACCACTGCCACACCGACCTCCGCCCCCGCACCTTCTCCAGGGGGCCCAGCCCCTACTCCAAGCACTACTGCCACTCCACCAAGCACCGGTGCCACCCCACCAAGCGGCACCACCACTCCTTCCACCCCTGCACCCGCCGCTGATGTCACCCCACCACCACCTAATGCCGCGACATCTCTTGGCGTTGCTGGCCTATCCACCGCCTTCTTGTCCATTGCTGTAGCTTTGTTCATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

218

Amino Acids

21.78

Weight (kDa)

6.01

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 47 - 130 1.1e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 278, 413, 503, 521
AccII CGCG 1 cut(s) 584
AciI CCGC 9 cut(s) 69, 132, 435, 441, 519, 549, 552, 582, 615
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 385
AdeI CACNNNGTG 1 cut(s) 241
AfiI CCNNNNNNNGG 5 cut(s) 101, 138, 452, 500, 518
AgeI ACCGGT 1 cut(s) 500
AgsI TTSAA 2 cut(s) 217, 226
AjnI CCWGG 2 cut(s) 170, 451
AluBI AGCT 3 cut(s) 101, 394, 638
AluI AGCT 3 cut(s) 101, 394, 638
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 4 cut(s) 174, 385, 457, 604
ApaI GGGCCC 1 cut(s) 461
ApeKI GCWGC 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AsiGI ACCGGT 1 cut(s) 500
AspS9I GGNCC 4 cut(s) 104, 174, 457, 458
AsuHPI GGTGA 4 cut(s) 212, 262, 394, 553
AsuNHI GCTAGC 1 cut(s) 59
AvaII GGWCC 1 cut(s) 104
BaeGI GKGCMC 2 cut(s) 416, 461
BanI GGYRCC 4 cut(s) 278, 413, 503, 521
BanII GRGCYC 1 cut(s) 461
Bbv12I GWGCWC 1 cut(s) 348
BbvCI CCTCAGC 2 cut(s) 97, 246
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 2 cut(s) 172, 453
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 2 cut(s) 60, 209
BfmI CTRYAG 1 cut(s) 633
BisI GCNGC 4 cut(s) 52, 520, 552, 582
BlsI GCNGC 4 cut(s) 53, 521, 553, 583
Bme1390I CCNGG 2 cut(s) 172, 453
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 4 cut(s) 104, 174, 457, 458
BmiI GGNNCC 8 cut(s) 27, 106, 280, 415, 458, 459, 505, 523
BmrFI CCNGG 2 cut(s) 172, 453
BmtI GCTAGC 1 cut(s) 63
BpmI CTGGAG 2 cut(s) 24, 435
Bpu10I CCTNAGC 2 cut(s) 97, 246
BsaJI CCNNGG 2 cut(s) 171, 452
BsaWI WCCGGW 2 cut(s) 28, 500
BsaXI ACNNNNNCTCC 4 cut(s) 472, 502, 514, 544
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 138, 452, 500, 518
Bse118I RCCGGY 3 cut(s) 22, 338, 500
Bse3DI GCAATG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 172, 453
BseDI CCNNGG 2 cut(s) 171, 452
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 5 cut(s) 101, 138, 452, 500, 518
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 2 cut(s) 111, 237
BseSI GKGCMC 2 cut(s) 416, 461
BseXI GCAGC 1 cut(s) 63
BseYI CCCAGC 2 cut(s) 82, 460
BsgI GTGCAG 2 cut(s) 343, 528
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 4 cut(s) 176, 387, 459, 606
BshNI GGYRCC 4 cut(s) 278, 413, 503, 521
BshTI ACCGGT 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 5 cut(s) 23, 29, 135, 339, 501
BslI CCNNNNNNNGG 5 cut(s) 101, 138, 452, 500, 518
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 4 cut(s) 176, 387, 459, 606
Bsp120I GGGCCC 1 cut(s) 457
Bsp1286I GDGCHC 3 cut(s) 348, 416, 461
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 9 cut(s) 69, 132, 435, 441, 519, 549, 552, 582, 615
BspANI GGCC 4 cut(s) 176, 387, 459, 606
BspCNI CTCAG 2 cut(s) 110, 238
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 8 cut(s) 27, 106, 280, 415, 458, 459, 505, 523
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 238
BspT107I GGYRCC 4 cut(s) 278, 413, 503, 521
BsrDI GCAATG 1 cut(s) 627
BsrFI RCCGGY 3 cut(s) 22, 338, 500
BssAI RCCGGY 3 cut(s) 22, 338, 500
BssECI CCNNGG 2 cut(s) 171, 452
BssMI GATC 1 cut(s) 230
Bst2UI CCWGG 2 cut(s) 172, 453
Bst4CI ACNGT 2 cut(s) 121, 406
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 5 cut(s) 24, 61, 344, 396, 604
BstDEI CTNAG 2 cut(s) 97, 246
BstEII GGTNACC 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 450
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 1 cut(s) 584
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 230
BstMWI GCNNNNNNNGC 5 cut(s) 60, 77, 384, 551, 603
BstNI CCWGG 2 cut(s) 172, 453
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 170, 451
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 2 cut(s) 416, 461
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 1 cut(s) 63
BsuRI GGCC 4 cut(s) 176, 387, 459, 606
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 3 cut(s) 61, 373, 417
BtsIMutI CAGTG 5 cut(s) 61, 117, 326, 373, 417
Cac8I GCNNGC 5 cut(s) 24, 61, 344, 396, 604
CaiI CAGNNNCTG 1 cut(s) 171
Cfr10I RCCGGY 3 cut(s) 22, 338, 500
Cfr13I GGNCC 4 cut(s) 104, 174, 457, 458
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 3 cut(s) 35, 273, 646
DdeI CTNAG 2 cut(s) 97, 246
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
DraIII CACNNNGTG 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 385
EciI GGCGGA 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 170, 451
EcoT38I GRGCYC 1 cut(s) 461
FaeI CATG 3 cut(s) 38, 276, 649
FaiI YATR 4 cut(s) 36, 267, 274, 647
FatI CATG 3 cut(s) 34, 272, 645
FauI CCCGC 3 cut(s) 76, 448, 556
Fnu4HI GCNGC 4 cut(s) 52, 520, 552, 582
FokI GGATG 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 4 cut(s) 52, 520, 552, 582
FspBI CTAG 2 cut(s) 60, 209
GluI GCNGC 4 cut(s) 52, 520, 552, 582
GsaI CCCAGC 2 cut(s) 86, 464
GsuI CTGGAG 2 cut(s) 24, 435
HaeIII GGCC 4 cut(s) 176, 387, 459, 606
HapII CCGG 5 cut(s) 23, 29, 135, 339, 501
Hin1II CATG 3 cut(s) 38, 276, 649
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 4 cut(s) 4, 269, 291, 321
HpaII CCGG 5 cut(s) 23, 29, 135, 339, 501
HphI GGTGA 4 cut(s) 212, 262, 394, 553
Hpy188I TCNGA 2 cut(s) 125, 320
Hpy188III TCNNGA 2 cut(s) 41, 223
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 5 cut(s) 84, 199, 456, 543, 628
HpyCH4III ACNGT 2 cut(s) 121, 406
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 360, 378, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 77, 384, 551, 603
HpyF3I CTNAG 2 cut(s) 97, 246
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 38, 276, 649
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 31, 43
Lsp1109I GCAGC 1 cut(s) 63
MaeI CTAG 2 cut(s) 60, 209
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 4 cut(s) 200, 250, 400, 559
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 343
MhlI GDGCHC 3 cut(s) 348, 416, 461
MluCI AATT 1 cut(s) 262
MlyI GAGTC 3 cut(s) 13, 278, 285
MmeI TCCRAC 2 cut(s) 103, 309
MnlI CCTC 6 cut(s) 18, 106, 187, 241, 292, 442
MroNI GCCGGC 1 cut(s) 22
MseI TTAA 2 cut(s) 408, 652
MslI CAYNNNNRTG 1 cut(s) 209
MspA1I CMGCKG 2 cut(s) 101, 554
MspI CCGG 5 cut(s) 23, 29, 135, 339, 501
MspR9I CCNGG 2 cut(s) 172, 453
MvaI CCWGG 2 cut(s) 172, 453
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 5 cut(s) 60, 77, 384, 551, 603
NaeI GCCGGC 1 cut(s) 24
NdeII GATC 1 cut(s) 230
NgoMIV GCCGGC 1 cut(s) 22
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 38, 276, 649
NlaIV GGNNCC 8 cut(s) 27, 106, 280, 415, 458, 459, 505, 523
NmuCI GTSAC 4 cut(s) 200, 250, 400, 559
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 321
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 4 cut(s) 53, 521, 553, 583
PleI GAGTC 3 cut(s) 12, 277, 285
PpsI GAGTC 3 cut(s) 12, 277, 285
Psp6I CCWGG 2 cut(s) 170, 451
PspEI GGTNACC 1 cut(s) 250
PspFI CCCAGC 2 cut(s) 82, 460
PspGI CCWGG 2 cut(s) 170, 451
PspN4I GGNNCC 8 cut(s) 27, 106, 280, 415, 458, 459, 505, 523
PspOMI GGGCCC 1 cut(s) 457
PspPI GGNCC 4 cut(s) 104, 174, 457, 458
PstNI CAGNNNCTG 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 2 cut(s) 408, 652
SatI GCNGC 4 cut(s) 52, 520, 552, 582
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 4 cut(s) 104, 174, 457, 458
SchI GAGTC 3 cut(s) 13, 278, 285
ScrFI CCNGG 2 cut(s) 172, 453
SduI GDGCHC 3 cut(s) 348, 416, 461
SfcI CTRYAG 1 cut(s) 633
SgrAI CRCCGGYG 1 cut(s) 500
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 1 cut(s) 262
SsiI CCGC 9 cut(s) 69, 132, 435, 441, 519, 549, 552, 582, 615
SspMI CTAG 2 cut(s) 60, 209
StyD4I CCNGG 2 cut(s) 170, 451
TaaI ACNGT 2 cut(s) 121, 406
TaiI ACGT 1 cut(s) 243
TasI AATT 1 cut(s) 262
TauI GCSGC 3 cut(s) 522, 554, 584
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 2 cut(s) 408, 652
Tru9I TTAA 2 cut(s) 408, 652
TscAI CASTG 5 cut(s) 61, 124, 333, 380, 424
TseFI GTSAC 4 cut(s) 200, 250, 400, 559
TseI GCWGC 1 cut(s) 51
Tsp45I GTSAC 4 cut(s) 200, 250, 400, 559
TspDTI ATGAA 4 cut(s) 23, 181, 343, 634
TspRI CASTG 5 cut(s) 61, 124, 333, 380, 424
VpaK11BI GGWCC 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 450
XspI CTAG 2 cut(s) 60, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.