Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005512

Physical Location & Seq

Genomic Coordinates Reverse (-)

2280471 .. 2282684

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTAGTGAACTCAAATATTTCGCCGTTCTAGCCATAACAGTGGCTGCCCTCCTTCACCCCACAGCAGCAATAGAAACCCACGTCGTTGGAGATGAATTCGGATGGATTGTTCCTCCCGGAGGTCATTACGCTTACGAAGCCTGGGCTTCCGGGCACAAATTCTCCGTCGGCGACATTCTTGAGTTCAACTTCACGACTGGTGACCAGGACGTAGCCATGGTTACAAAGGAAGCTTTCGATAGCTGCAATTCCACAAGCCCCATCGAGCTTAAAACAACTGGTCCGGCCAATTTCACATTGGATACGATTGGGTCGTACTATTTCATTGGAACCATGGACAAGCACTGCGAGTTGGGACAGAAGCTAGCCATCAACGTGACTGCTCATTCTGGATCACCGACTCCAAGCCCTTCTCCTAAACCTAGTCCTACACCAAGAGGCCCTGTGACTTACGTCGTCGGCGATCATTTTGGATGGATTGTCCCACCGGGCGGTGAACTTGCTTATTCTGCTTGGGCTTACGGCAAGACTTTCTATGTTGGTGACACTCTAGGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

187

Amino Acids

19.95

Weight (kDa)

5.19

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	44 - 121	6.1e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02890 FvH4_1g02900
malus_domestica	MD02G1028700.v1.1 MD02G1028800.v1.1 MD15G1170300.v1.1 MD15G1170400.v1.1
prunus_persica	Prupe.7G246200_v2.0.a1
pyrus_communis	pycom02g02340 pycom02g02350 pycom15g15180 pycom15g15190
rosa_chinensis	RchiOBHm_Chr2g0088011 RchiOBHm_Chr2g0088031
rosa_laevigata	RLG00000015918
rosa_multiflora	Rmu_sc0003275.1_g000008 Rmu_sc0003275.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153050 Rroxscaffold_2G00153060
rosa_rugosa	Rorug01G0480300 Rorug01G0480400
rosa_samantha	Rh2AG035100 Rh2AG035200 Rh2BG034100 Rh2BG034200 Rh2CG035100 Rh2CG035300 Rh2DG034800
rosa_wichuraiana	Rw2G002760 Rw2G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	98, 161
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	122, 494
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	143, 207
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	4 cut(s)	236, 246, 271, 367
AluI	AGCT	4 cut(s)	236, 246, 271, 367
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	288, 442
ApeKI	GCWGC	3 cut(s)	47, 68, 246
ApoI	RAATTY	2 cut(s)	98, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspS9I	GGNCC	2 cut(s)	284, 443
AsuC2I	CCSGG	3 cut(s)	120, 154, 492
AsuHPI	GGTGA	5 cut(s)	50, 215, 390, 509, 557
AsuNHI	GCTAGC	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	34, 80, 233
BccI	CCATC	4 cut(s)	99, 272, 380, 471
BceAI	ACGGC	2 cut(s)	11, 541
BciT130I	CCWGG	2 cut(s)	145, 209
BciVI	GTATCC	1 cut(s)	298
BcnI	CCSGG	3 cut(s)	120, 154, 492
BfaI	CTAG	4 cut(s)	32, 368, 426, 554
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	3 cut(s)	48, 69, 247
BlsI	GCNGC	3 cut(s)	49, 70, 248
Bme1390I	CCNGG	5 cut(s)	120, 145, 154, 209, 492
Bme18I	GGWCC	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	284, 443
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	5 cut(s)	120, 145, 154, 209, 492
BmtI	GCTAGC	1 cut(s)	371
BoxI	GACNNNNGTC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	3 cut(s)	120, 154, 492
BsaJI	CCNNGG	3 cut(s)	144, 219, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 494
Bse1I	ACTGG	2 cut(s)	205, 286
BseBI	CCWGG	2 cut(s)	145, 209
BseDI	CCNNGG	3 cut(s)	144, 219, 336
BseGI	GGATG	2 cut(s)	110, 482
BseLI	CCNNNNNNNGG	2 cut(s)	122, 494
BseNI	ACTGG	2 cut(s)	205, 286
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	34, 80, 233
BshFI	GGCC	2 cut(s)	290, 444
BsiSI	CCGG	4 cut(s)	120, 153, 287, 491
BslFI	GGGAC	2 cut(s)	372, 470
BslI	CCNNNNNNNGG	2 cut(s)	122, 494
BsmFI	GGGAC	2 cut(s)	372, 470
BsnI	GGCC	2 cut(s)	290, 444
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	395, 466
Bsp19I	CCATGG	2 cut(s)	219, 336
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	290, 444
BspLI	GGNNCC	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	205, 286
BssECI	CCNNGG	3 cut(s)	144, 219, 336
BssMI	GATC	2 cut(s)	395, 466
BssT1I	CCWWGG	2 cut(s)	219, 336
Bst2UI	CCWGG	2 cut(s)	145, 209
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	369
BstDSI	CCRYGG	2 cut(s)	219, 336
BstEII	GGTNACC	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	110, 482
BstKTI	GATC	2 cut(s)	398, 469
BstMBI	GATC	2 cut(s)	395, 466
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 140, 512
BstNI	CCWGG	2 cut(s)	145, 209
BstPAI	GACNNNNGTC	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	5 cut(s)	118, 143, 152, 207, 490
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	34, 80, 233
BstXI	CCANNNNNNTGG	2 cut(s)	43, 89
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	290, 444
BtgI	CCRYGG	2 cut(s)	219, 336
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	110, 482
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	48, 346
Cac8I	GCNNGC	1 cut(s)	369
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	284, 443
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	220, 337
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	2 cut(s)	397, 468
DpnII	GATC	2 cut(s)	395, 466
EaeI	YGGCCR	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	219, 336
Eco47I	GGWCC	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	443
EcoO65I	GGTNACC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	143, 207
EcoT14I	CCWWGG	2 cut(s)	219, 336
ErhI	CCWWGG	2 cut(s)	219, 336
FaeI	CATG	2 cut(s)	223, 340
FaiI	YATR	4 cut(s)	38, 221, 338, 540
FaqI	GGGAC	2 cut(s)	372, 470
FatI	CATG	2 cut(s)	219, 336
Fnu4HI	GCNGC	3 cut(s)	48, 69, 247
FokI	GGATG	2 cut(s)	117, 489
Fsp4HI	GCNGC	3 cut(s)	48, 69, 247
FspBI	CTAG	4 cut(s)	32, 368, 426, 554
GluI	GCNGC	3 cut(s)	48, 69, 247
HaeIII	GGCC	2 cut(s)	290, 444
HapII	CCGG	4 cut(s)	120, 153, 287, 491
Hin1II	CATG	2 cut(s)	223, 340
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	4 cut(s)	120, 153, 287, 491
HphI	GGTGA	5 cut(s)	50, 215, 390, 509, 557
Hpy166II	GTNNAC	2 cut(s)	11, 500
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	3 cut(s)	182, 196, 393
Hpy8I	GTNNAC	2 cut(s)	11, 500
Hpy99I	CGWCG	4 cut(s)	89, 173, 461, 464
HpyAV	CCTTC	2 cut(s)	65, 423
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	4 cut(s)	84, 213, 378, 456
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 140, 512
HpySE526I	ACGT	4 cut(s)	84, 213, 378, 456
Hsp92II	CATG	2 cut(s)	223, 340
Kzo9I	GATC	2 cut(s)	395, 466
Lsp1109I	GCAGC	3 cut(s)	34, 80, 233
MaeI	CTAG	4 cut(s)	32, 368, 426, 554
MaeII	ACGT	4 cut(s)	84, 213, 378, 456
MaeIII	GTNAC	5 cut(s)	203, 223, 379, 448, 545
MalI	GATC	2 cut(s)	397, 468
MboI	GATC	2 cut(s)	395, 466
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	98, 161, 250, 292
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	62, 116, 126, 434
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	2 cut(s)	41, 377
MspI	CCGG	4 cut(s)	120, 153, 287, 491
MspR9I	CCNGG	5 cut(s)	120, 145, 154, 209, 492
MvaI	CCWGG	2 cut(s)	145, 209
MwoI	GCNNNNNNNGC	3 cut(s)	32, 140, 512
NciI	CCSGG	3 cut(s)	120, 154, 492
NcoI	CCATGG	2 cut(s)	219, 336
NdeII	GATC	2 cut(s)	395, 466
NheI	GCTAGC	1 cut(s)	367
NlaIII	CATG	2 cut(s)	223, 340
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	4 cut(s)	203, 379, 448, 545
PcsI	WCGNNNNNNNCGW	2 cut(s)	314, 462
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	49, 70, 248
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	143, 207
PspEI	GGTNACC	1 cut(s)	203
PspGI	CCWGG	2 cut(s)	143, 207
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	284, 443
PstNI	CAGNNNCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	41, 377
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	48, 69, 247
Sau3AI	GATC	2 cut(s)	395, 466
Sau96I	GGNCC	2 cut(s)	284, 443
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	5 cut(s)	120, 145, 154, 209, 492
SduI	GDGCHC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	41, 377
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	98, 161, 250, 292
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	4 cut(s)	32, 368, 426, 554
StyD4I	CCNGG	5 cut(s)	118, 143, 152, 207, 490
StyI	CCWWGG	2 cut(s)	219, 336
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	4 cut(s)	87, 216, 381, 459
TaqI	TCGA	2 cut(s)	240, 267
TasI	AATT	4 cut(s)	98, 161, 250, 292
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	48, 353
TseFI	GTSAC	4 cut(s)	203, 379, 448, 545
TseI	GCWGC	3 cut(s)	47, 68, 246
Tsp45I	GTSAC	4 cut(s)	203, 379, 448, 545
TspDTI	ATGAA	2 cut(s)	111, 316
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	2 cut(s)	48, 353
VpaK11BI	GGWCC	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	2 cut(s)	98, 161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	4 cut(s)	32, 368, 426, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.