Rmu_sc0003275.1_g000012

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003275.1
OG0019293
Physical Location & Seq
Reverse (-)
46418 .. 46942
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003275.1_g000012.1.cds

Sequence Viewer

Length: 435 bp
atgaaagcgaattatgtgatggttcttgttatagccatggcagcaacgggagtactaatggtacacggagcagaaggtgcagaatatgtagtaggagacgacttggggtggacgattcctcctcatggcgctgccgattttgggtcatgggcttcctatcatagcttgacagtcgacgatattctagcaggagaacaagacttggcttttgtaagcaaggaagattttctcacttgcaacacggcgaatccctttcatgtttttgacaaccaaactacattcaaatttctttccaaagacagattcttttgcaccagcaccttcgccggcaactgctccaagggccaaaaagtagtcgttgatattggtcctgctgtggattccactggtgatatttctcctagtccaagtccaagttctgctgaagcttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

144

Amino Acids

15.23

Weight (kDa)

4.44

Isoelectric Point (pI)

25.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019293)

Species Orthologous Gene IDs
malus_domestica MD11G1227000.v1.1
pyrus_communis pycom11g19960
rosa_chinensis RchiOBHm_Chr2g0088041
rosa_multiflora Rmu_sc0003275.1_g000012
rosa_roxburghii Rroxscaffold_2G00153030
rosa_rugosa Rorug01G0480400
rosa_samantha Rh2BG034300 Rh2DG034900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 2 cut(s) 54, 63
AfiI CCNNNNNNNGG 2 cut(s) 125, 141
AgsI TTSAA 1 cut(s) 283
AjuI GAANNNNNNNTTGG 4 cut(s) 287, 319, 400, 432
AluBI AGCT 2 cut(s) 165, 428
AluI AGCT 2 cut(s) 165, 428
Alw26I GTCTC 1 cut(s) 90
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 2 cut(s) 41, 131
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 343, 368
AsuHPI GGTGA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 53, 118
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 2 cut(s) 185, 402
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 2 cut(s) 42, 132
BlsI GCNGC 2 cut(s) 43, 133
BmcAI AGTACT 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 343, 368
BsaJI CCNNGG 2 cut(s) 36, 339
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 141
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 36, 339
BseLI CCNNNNNNNGG 2 cut(s) 125, 141
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 53, 118
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 125, 141
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 36
BspANI GGCC 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 36, 339
BssT1I CCWWGG 2 cut(s) 36, 339
Bst4CI ACNGT 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 41, 77, 342
BstV1I GCAGC 2 cut(s) 53, 118
BsuRI GGCC 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 343, 368
Csp6I GTAC 2 cut(s) 53, 62
CviAII CATG 4 cut(s) 37, 125, 147, 257
CviJI RGCY 6 cut(s) 35, 152, 165, 206, 345, 428
CviKI_1 RGCY 6 cut(s) 35, 152, 165, 206, 345, 428
CviQI GTAC 2 cut(s) 53, 62
Eco130I CCWWGG 2 cut(s) 36, 339
Eco47I GGWCC 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 36, 339
ErhI CCWWGG 2 cut(s) 36, 339
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 4 cut(s) 40, 128, 150, 260
FaiI YATR 8 cut(s) 15, 32, 38, 87, 126, 148, 162, 258
FatI CATG 4 cut(s) 36, 124, 146, 256
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 42, 132
Fsp4HI GCNGC 2 cut(s) 42, 132
FspBI CTAG 2 cut(s) 185, 402
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 42, 132
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 131
Hin1II CATG 4 cut(s) 40, 128, 150, 260
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 115, 247, 303, 380
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 3 cut(s) 64, 111, 175
Hpy188III TCNNGA 1 cut(s) 432
Hpy8I GTNNAC 3 cut(s) 64, 111, 175
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 68, 331
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 80, 237, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 77, 342
Hsp92II CATG 4 cut(s) 40, 128, 150, 260
HspAI GCGC 1 cut(s) 129
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 68, 341
LpnPI CCDG 5 cut(s) 174, 328, 340, 372, 384
Lsp1109I GCAGC 2 cut(s) 53, 118
MaeI CTAG 2 cut(s) 185, 402
MboII GAAGA 1 cut(s) 233
MluCI AATT 2 cut(s) 10, 284
MnlI CCTC 2 cut(s) 129, 132
MroNI GCCGGC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 225
MspI CCGG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 41, 77, 342
NaeI GCCGGC 1 cut(s) 328
NcoI CCATGG 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 4 cut(s) 40, 128, 150, 260
PdiI GCCGGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 4 cut(s) 115, 247, 303, 380
PkrI GCNGC 2 cut(s) 43, 133
PspPI GGNCC 2 cut(s) 343, 368
RsaI GTAC 2 cut(s) 54, 63
RsaNI GTAC 2 cut(s) 53, 62
SalI GTCGAC 1 cut(s) 173
SatI GCNGC 2 cut(s) 42, 132
Sau96I GGNCC 2 cut(s) 343, 368
ScaI AGTACT 1 cut(s) 54
SetI ASST 4 cut(s) 79, 167, 323, 430
SinI GGWCC 1 cut(s) 368
Sse9I AATT 2 cut(s) 10, 284
SspMI CTAG 2 cut(s) 185, 402
StyI CCWWGG 2 cut(s) 36, 339
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 10, 284
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 4 cut(s) 115, 247, 303, 380
TscAI CASTG 1 cut(s) 391
TseI GCWGC 2 cut(s) 41, 131
TspDTI ATGAA 2 cut(s) 17, 245
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 368
XapI RAATTY 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 2 cut(s) 185, 402
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.