Rroxscaffold_2G00153030

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019293
Physical Location & Seq
Forward (+)
89841213 .. 89841699
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153030.1

Sequence Viewer

Length: 390 bp
ATGAATGCGAATTATGTGATCGTTCTTGTTATAGCCATGGCAGCAACAGGAGTACTAATGGTACACAGAGCAGAAGGTGCAGAATATGTAGTAGGAGACGACTTGGGGTGGACGATTCCTCCTCATGGCGCTGCCGATTGCGAATCATGGGCTTCCTACCATAGCTTGACAGTTGACGATATTCTAGGTGATCCAACAAGACTCGGCTTTTGCAAGCAAGGAAGATTTTCTCACTTGCAACACGGCAGCCAAAAAGTAGTCGTTGATATTGGTCCTGCTGTGGATTCCACTGGTGATATTTCTCCTAGTCCAAGTCCAAGTTCTGCTGAAGCTTCTGCTGCTTCTGATCTCTTCCTGAAAAATTTGTGCCTCTCTAAACTAGATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

129

Amino Acids

13.51

Weight (kDa)

4.74

Isoelectric Point (pI)

29.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019293)

Species Orthologous Gene IDs
malus_domestica MD11G1227000.v1.1
pyrus_communis pycom11g19960
rosa_chinensis RchiOBHm_Chr2g0088041
rosa_multiflora Rmu_sc0003275.1_g000012
rosa_roxburghii Rroxscaffold_2G00153030
rosa_rugosa Rorug01G0480400
rosa_samantha Rh2BG034300 Rh2DG034900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 2 cut(s) 54, 63
AfiI CCNNNNNNNGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AluBI AGCT 2 cut(s) 165, 332
AluI AGCT 2 cut(s) 165, 332
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 41, 131, 246, 338
ApoI RAATTY 1 cut(s) 361
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
Asp700I GAANNNNTTC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 200, 305
AvaII GGWCC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 53, 118, 258, 325
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 3 cut(s) 185, 306, 380
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 4 cut(s) 42, 132, 247, 339
BlsI GCNGC 4 cut(s) 43, 133, 248, 340
BmcAI AGTACT 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 4 cut(s) 53, 118, 258, 325
BsgI GTGCAG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 18, 190, 346
Bsp19I CCATGG 1 cut(s) 36
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 18, 190, 346
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 215
BstDSI CCRYGG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 3 cut(s) 21, 193, 349
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 18, 190, 346
BstMWI GCNNNNNNNGC 3 cut(s) 41, 77, 338
BstV1I GCAGC 4 cut(s) 53, 118, 258, 325
BtgI CCRYGG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 215
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 53, 62
CviAII CATG 3 cut(s) 37, 125, 147
CviJI RGCY 6 cut(s) 35, 152, 165, 207, 249, 332
CviKI_1 RGCY 6 cut(s) 35, 152, 165, 207, 249, 332
CviQI GTAC 2 cut(s) 53, 62
DpnI GATC 3 cut(s) 20, 192, 348
DpnII GATC 3 cut(s) 18, 190, 346
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 3 cut(s) 40, 128, 150
FaiI YATR 7 cut(s) 15, 32, 38, 87, 126, 148, 162
FatI CATG 3 cut(s) 36, 124, 146
Fnu4HI GCNGC 4 cut(s) 42, 132, 247, 339
Fsp4HI GCNGC 4 cut(s) 42, 132, 247, 339
FspBI CTAG 3 cut(s) 185, 306, 380
GlaI GCGC 1 cut(s) 130
GluI GCNGC 4 cut(s) 42, 132, 247, 339
HaeII RGCGCY 1 cut(s) 132
HhaI GCGC 1 cut(s) 131
Hin1II CATG 3 cut(s) 40, 128, 150
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 4 cut(s) 115, 143, 201, 284
HphI GGTGA 2 cut(s) 200, 305
Hpy166II GTNNAC 3 cut(s) 64, 111, 175
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 3 cut(s) 64, 111, 175
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 80, 213, 238
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 77, 338
Hsp92II CATG 3 cut(s) 40, 128, 150
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 18, 190, 346
LpnPI CCDG 4 cut(s) 33, 276, 288, 368
Lsp1109I GCAGC 4 cut(s) 53, 118, 258, 325
MaeI CTAG 3 cut(s) 185, 306, 380
MalI GATC 3 cut(s) 20, 192, 348
MboI GATC 3 cut(s) 18, 190, 346
MboII GAAGA 2 cut(s) 234, 343
MluCI AATT 2 cut(s) 10, 361
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 3 cut(s) 129, 132, 380
MroXI GAANNNNTTC 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 41, 77, 338
NcoI CCATGG 1 cut(s) 36
NdeII GATC 3 cut(s) 18, 190, 346
NlaIII CATG 3 cut(s) 40, 128, 150
NmeAIII GCCGAG 1 cut(s) 183
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 115, 143, 284
PkrI GCNGC 4 cut(s) 43, 133, 248, 340
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 272
RsaI GTAC 2 cut(s) 54, 63
RsaNI GTAC 2 cut(s) 53, 62
SatI GCNGC 4 cut(s) 42, 132, 247, 339
Sau3AI GATC 3 cut(s) 18, 190, 346
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 1 cut(s) 195
SetI ASST 4 cut(s) 79, 167, 190, 334
SinI GGWCC 1 cut(s) 272
Sse9I AATT 2 cut(s) 10, 361
SspMI CTAG 3 cut(s) 185, 306, 380
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 172
TasI AATT 2 cut(s) 10, 361
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 3 cut(s) 115, 143, 284
TscAI CASTG 1 cut(s) 295
TseI GCWGC 4 cut(s) 41, 131, 246, 338
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 3 cut(s) 185, 306, 380
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.