Rh2BG034300

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019293
Physical Location & Seq
Reverse (-)
2371593 .. 2372201
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG034300.1

Sequence Viewer

Length: 366 bp
ATGTATAGTAGGAGACGACTTGGGGAAGACGATTCCTCCTATGGCGCTGCCGATTTTGAGTCATGGGCTTCCTATCATAGCTTGACAGTCAACGATATTCTAGTGTTCAAGTTTGCAGCAGGAGAACAAGACTTGGCTTTTGTAAACAAGGAAGATTTTCTCACTTGCAACACGGCGAATCCCTTTCATGTTTTTGACAACCAAACTACATTCAAATTTCTTTCCAAAGACAGATTCTTTTGCACCAGCACCTTCGCCGGCAACTGTTCCAAGGGCCAAAAAGTAGTCGTTGATATTGGTCCTGCTGTGGATTCCACTGGTGATATTTCTCCTAGTCCAAGTCCAAGTTCTGCTGAAGCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

121

Amino Acids

13.23

Weight (kDa)

4.67

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 17 - 93 3.1e-10 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019293)

Species Orthologous Gene IDs
malus_domestica MD11G1227000.v1.1
pyrus_communis pycom11g19960
rosa_chinensis RchiOBHm_Chr2g0088041
rosa_multiflora Rmu_sc0003275.1_g000012
rosa_roxburghii Rroxscaffold_2G00153030
rosa_rugosa Rorug01G0480400
rosa_samantha Rh2BG034300 Rh2DG034900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 215
AgsI TTSAA 2 cut(s) 109, 214
AjuI GAANNNNNNNTTGG 4 cut(s) 218, 250, 331, 363
AluBI AGCT 2 cut(s) 81, 359
AluI AGCT 2 cut(s) 81, 359
Alw26I GTCTC 1 cut(s) 7
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 47, 116
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 274, 299
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 34, 128
BceAI ACGGC 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 2 cut(s) 101, 333
BfoI RGCGCY 1 cut(s) 48
BisI GCNGC 2 cut(s) 48, 117
BlsI GCNGC 2 cut(s) 49, 118
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 274, 299
BpiI GAAGAC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 322
BseXI GCAGC 2 cut(s) 34, 128
BshFI GGCC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 7
BsmBI CGTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 276
BspANI GGCC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 88, 266
BstC8I GCNNGC 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 34, 128
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 274, 299
CviAII CATG 2 cut(s) 63, 188
CviJI RGCY 5 cut(s) 68, 81, 137, 276, 359
CviKI_1 RGCY 5 cut(s) 68, 81, 137, 276, 359
Eco130I CCWWGG 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 2 cut(s) 66, 191
FaiI YATR 5 cut(s) 6, 42, 64, 78, 189
FatI CATG 2 cut(s) 62, 187
Fnu4HI GCNGC 2 cut(s) 48, 117
Fsp4HI GCNGC 2 cut(s) 48, 117
FspBI CTAG 2 cut(s) 101, 333
GlaI GCGC 1 cut(s) 46
GluI GCNGC 2 cut(s) 48, 117
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 1 cut(s) 276
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 66, 191
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 357
HinfI GANTC 5 cut(s) 32, 59, 178, 234, 311
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 91, 145
Hpy188III TCNNGA 1 cut(s) 363
Hpy8I GTNNAC 2 cut(s) 91, 145
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 88, 266
HpyCH4V TGCA 3 cut(s) 116, 168, 243
Hsp92II CATG 2 cut(s) 66, 191
HspAI GCGC 1 cut(s) 45
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
LpnPI CCDG 5 cut(s) 105, 259, 271, 303, 315
Lsp1109I GCAGC 2 cut(s) 34, 128
MaeI CTAG 2 cut(s) 101, 333
MboII GAAGA 2 cut(s) 38, 164
MluCI AATT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 1 cut(s) 46
MroNI GCCGGC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 156
MspI CCGG 1 cut(s) 258
NaeI GCCGGC 1 cut(s) 259
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 2 cut(s) 66, 191
PdiI GCCGGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 4 cut(s) 32, 178, 234, 311
PkrI GCNGC 2 cut(s) 49, 118
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 274, 299
SatI GCNGC 2 cut(s) 48, 117
Sau96I GGNCC 2 cut(s) 274, 299
SchI GAGTC 1 cut(s) 68
SetI ASST 3 cut(s) 83, 254, 361
SinI GGWCC 1 cut(s) 299
Sse9I AATT 1 cut(s) 215
SspMI CTAG 2 cut(s) 101, 333
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 88, 266
TasI AATT 1 cut(s) 215
TfiI GAWTC 4 cut(s) 32, 178, 234, 311
TscAI CASTG 1 cut(s) 322
TseI GCWGC 2 cut(s) 47, 116
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 101, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.