Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009549

Physical Location & Seq

Genomic Coordinates Forward (+)

42195392 .. 42199025

Gene Structure 3634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1308000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2547 bp

ATGCATATATTTCCCTCGTTCTCGGTGGTATTTCCGTCAAACAAAAAAAAATCCCCAAATGTCCATGTAACGACCCCCTCTCTCTTTCTCTCTCTCCCATTTTTCCTAAATCCTCTCCGCGCCCTGTTCTCTCTCATCGCCACGATGCTGCCCACGAAATCTCGGCGGAAAGTGGCTCCGTCCGCCGCGGAAAACGGCGACTCGGCTGAAAAGCTCGACCAGCTGCTCCTCTCCTCCGCCATCTGCAACGGCGAGGATGTGGGCCCCTTCGTCCGCAAGGCTTTCACTTCCGGGAAGCCCGAGACGCTGCTCCAGCACCTTCGCCACTTCTCCCGATCCAAGGAGTCCGAAATCGAGGAGGTCTGCAAGGCCCACTACCAAGACTTCATCCTCGCCGTCGACGACCTTCGATCTCTCCTCTCCGACGTCGATTCTCTCAAGTCTTCCCTCTCCGATTCCAACGCCAAGCTCCAGTCCGTCGGCCTCCCTCTTCTCTCCTCCCTCGACGCCTTCGTCGAAGCCCGAAACGTATCCCGAAACGTCAACCTCGCGCTCGAATCGGTCCGGAATTGTATTCGTTTGATGGAGCTCTGCTCCCGATCCAATCACCATCTCTCCAGCAGCAACTTCTACATGGCCCTCAAGTGCGTCGACACAATCGAGTCCGAGTTCCTGGACAAAACGCCGTCGTCTACGCTCAAGCGGATGCTGGAGAAGAAGATTCCAGAGATTCGGTGGCACATCGAACGGAAGGTCAGTAAGGAGTTCGGCGATTGGCTGGTGGAGATCCGCGTGGTGAGTCGGAACCTCGGTCAATTGGCGATCGGTCAAGCTTCGTCGGCGAGGCAGCGGGAAGAGGATCTGAGAATCAAGCAGCGGCAAGCTGAGGAGCAGAGCCGCCTCAGCCTCAGAGACACTGTTTACGCTTTGGAAGAGGACGACGACGACGGACTCGGCGGCGGTGGGGTTGGAGATGATGGTTTTAATGGCGGAGGTGGATTTGATTTGACTCCCTTGTACAGAGCCTATCATATACACCAGACTCTGGGGCTTGAAGACCGATTCAAGCAATATTACTTCGAGAATCGAAAGCTTCAGCTCACCTCTGACTTTCAGGTATCTTCCATGACTCCGTTTCTTGAATCGCATCAAACTTTCTTTGCGCAAATCGCCGGATTTTTCATCGTGGAGGATCGAATTGTGAGGACCGGTGGCGGTTTGATTTCGAAATTGGAGGTTGATAATTTGTGGGAAGCTGCTGTGAGTAAAATGTGTTCTGTTTTAGAGGATCAGTTTTCCAGGATGCAAACTGCTAACCATTTGCTGTTGATTAAGGACTATGTGAGCTTGTTAGGTGTGACGTTGCGTCGGTATGGATATTTGGTTGACCCGTTGCTTGATGTTCTAAGCAAACACAGGGATAAGTACCATGAGCTGTTGTTGTCGGATTGTCGTAAACAGATTGCTGAAGCTCTTTCGGCTGACAAATTCGATCAGATGTTGATGAAGAGAGAATATGAGTATTCCATGAATGTTCTTTCGTTTCAGATACAGACGTCTGATATCATACCGGCTTTTCCATATGTTGCACCATTTAGTTCGACAGTGCCTGATTGTTGCCGCATTGTTCGGTCCTTTATTGAGGATTCTGTGAGTTTCATGTCGTATGGCGGGCAGCTTGATTTCTTTGATGTTGTGAAGAAGTATTTGGATAGGTTGTTGAGTGAGGTTTTGGATGGGGCTCTTTTGAAGCTTATCAGTACATCTATCCATGGGGTCTCCCAGGCAATGCAAGTAGCCGCTAATATGGCTGTCATGGAGCGAGCTTGTGATTTCTTCTTCCGACATGCTGCTCAGCTTTCTGGAGTGCCCTTGAGAATGGTAGAGAGGGGGCGGAGGCAGTTTCCGCTATGCAAAGCCCGTGATGCAGCAGAAGACACGCTCTCTGGGCTGCTTAAACAAAAAGTGGATGGGTTCATGACGTTGATTGAGAATGTGAACTGGATGGCCGATGAGCCTTGGCCGAATGGGAATGAATATGTGAATGAGGTGATCATTTATTTGGAAACTCTGGTTTCCACTGCTCAGCAAATATTGCCTCCTCAGGTTCTCAAACGAGTTTTGCAAGATGTCCTTTCTCACATATCGGAGAAGATAATAGGGGCTTTACTTGGGGACACAGTTAAGAGGTTTACCGTACATGCAATTATGGGCATTGATGTGGATATTCGATTACTGGAATCTTTTGCAGATAATCAAGCTCCTCTACTCTCAGATGAGGAAGCAAATCAGTTGAAAACGGCACTTACTGAGTCGAGGCAATTAGTTAACTTACTCTTAAGCAATCATCCAGAGAATTTTCTTAATCCGGTAATCAGGGAGAGGAGTTACAATACCTTGGACTACAGAAAAGTAGTGCTTATTTCAGAAAAGTTGAGGGATCCTTCAGAGCGGCGATTTGGAACCTTTGGTAGCCGGGGAAGCAGGCAGAACCCCCAGAAGAAATCTCTAGATGCATTGATTAAGAGACTCAAGGATATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009875 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0030054 GO:0030154 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0048468 GO:0048544 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060321 GO:0060560 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec15

Protein Analysis

849

Amino Acids

95.9

Weight (kDa)

6.3

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXOC6_Sec15_N	PF20651	106 - 275	3.2e-45	Exocyst complex component EXOC6/Sec15, N-terminal
Sec15_C	PF04091	464 - 811	1e-91	Exocyst complex subunit Sec15 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02350 AT4G02350
fragaria_vesca	FvH4_2g25910 FvH4_2g25910 FvH4_2g25910 FvH4_2g25910
malus_domestica	MD03G1290500.v1.1 MD11G1308000.v1.1
prunus_persica	Prupe.8G263500_v2.0.a1
pyrus_communis	pycom03g22980 pycom11g26930
rosa_chinensis	RchiOBHm_Chr6g0294231
rosa_laevigata	RLG00000011888
rosa_multiflora	Rmu_co8430431.1_g000001 Rmu_sc0002462.1_g000003
rosa_roxburghii	Rroxscaffold_7G00173530
rosa_rugosa	Rorug06G0242700
rosa_samantha	Rh6AG354900 Rh6BG361800 Rh6CG369100 Rh6DG355900
rosa_wichuraiana	Rw6G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AatII	GACGTC	2 cut(s)	429, 1559
Acc16I	TGCGCA	1 cut(s)	1164
AccB7I	CCANNNNNTGG	1 cut(s)	1045
AccBSI	CCGCTC	1 cut(s)	2452
AccI	GTMKAC	3 cut(s)	399, 651, 692
AccII	CGCG	4 cut(s)	120, 188, 551, 792
AccIII	TCCGGA	1 cut(s)	564
AclWI	GGATC	8 cut(s)	330, 594, 781, 867, 1200, 1296, 2435, 2448
AcoI	YGGCCR	2 cut(s)	2007, 2021
AcsI	RAATTY	2 cut(s)	1487, 2356
AcuI	CTGAAG	3 cut(s)	1079, 1488, 2430
AcyI	GRCGYC	3 cut(s)	426, 507, 1556
AfaI	GTAC	4 cut(s)	1019, 1427, 1762, 2199
AfiI	CCNNNNNNNGG	2 cut(s)	340, 1045
AflII	CTTAAG	1 cut(s)	2338
AgeI	ACCGGT	1 cut(s)	1208
AgsI	TTSAA	5 cut(s)	1055, 1066, 1142, 1750, 2296
AhdI	GACNNNNNGTC	1 cut(s)	1365
AjnI	CCWGG	3 cut(s)	672, 1298, 1782
AjuI	GAANNNNNNNTTGG	2 cut(s)	1691, 1723
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	4 cut(s)	296, 906, 1783, 2521
AlwI	GGATC	8 cut(s)	330, 594, 781, 867, 1200, 1296, 2435, 2448
AlwNI	CAGNNNCTG	2 cut(s)	1045, 1610
Ama87I	CYCGRG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	564
AoxI	GGCC	6 cut(s)	262, 369, 481, 636, 2007, 2021
ApaI	GGGCCC	1 cut(s)	266
ApoI	RAATTY	2 cut(s)	1487, 2356
ArsI	GACNNNNNNTTYG	2 cut(s)	738, 770
AsiGI	ACCGGT	1 cut(s)	1208
AspLEI	GCGC	3 cut(s)	122, 553, 1165
AspS9I	GGNCC	7 cut(s)	262, 263, 370, 562, 637, 1206, 1632
AsuC2I	CCSGG	2 cut(s)	292, 2477
AsuHPI	GGTGA	4 cut(s)	599, 808, 1093, 2062
AsuII	TTCGAA	1 cut(s)	1226
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	3 cut(s)	562, 1206, 1632
AxyI	CCTNAGG	1 cut(s)	2103
BaeGI	GKGCMC	2 cut(s)	266, 1872
BaeI	ACNNNNGTAYC	2 cut(s)	1541, 1574
BamHI	GGATCC	1 cut(s)	2440
BanII	GRGCYC	3 cut(s)	266, 591, 1744
BbsI	GAAGAC	3 cut(s)	435, 1062, 1941
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	2 cut(s)	885, 902
BccI	CCATC	7 cut(s)	248, 577, 618, 971, 1730, 1964, 1999
BceAI	ACGGC	5 cut(s)	211, 265, 380, 670, 2316
BciT130I	CCWGG	3 cut(s)	674, 1300, 1784
BciVI	GTATCC	1 cut(s)	541
BclI	TGATCA	1 cut(s)	2052
BcnI	CCSGG	2 cut(s)	292, 2477
BcoDI	GTCTC	4 cut(s)	296, 906, 1783, 2521
BfaI	CTAG	1 cut(s)	2510
BfmI	CTRYAG	1 cut(s)	2404
BfrI	CTTAAG	1 cut(s)	2338
BfuI	GTATCC	1 cut(s)	541
BlpI	GCTNAGC	2 cut(s)	1854, 2085
Bme1390I	CCNGG	5 cut(s)	292, 674, 1300, 1784, 2477
Bme18I	GGWCC	3 cut(s)	562, 1206, 1632
BmeRI	GACNNNNNGTC	1 cut(s)	1365
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	7 cut(s)	262, 263, 370, 562, 637, 1206, 1632
BmiI	GGNNCC	6 cut(s)	177, 264, 265, 806, 2442, 2464
BmrFI	CCNGG	5 cut(s)	292, 674, 1300, 1784, 2477
BmsI	GCATC	6 cut(s)	135, 696, 1156, 1293, 1915, 2503
BpiI	GAAGAC	3 cut(s)	435, 1062, 1941
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	5 cut(s)	296, 455, 601, 731, 1884
Bpu10I	CCTNAGC	2 cut(s)	885, 902
Bpu1102I	GCTNAGC	2 cut(s)	1854, 2085
Bpu14I	TTCGAA	1 cut(s)	1226
BpuEI	CTTGAG	5 cut(s)	422, 626, 683, 1894, 2516
BpuMI	CCSGG	2 cut(s)	292, 2477
BsaHI	GRCGYC	3 cut(s)	426, 507, 1556
BsaI	GGTCTC	1 cut(s)	1783
BsaJI	CCNNGG	8 cut(s)	186, 339, 808, 1771, 1782, 2018, 2397, 2476
BsaWI	WCCGGW	3 cut(s)	564, 1208, 2368
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 1045
Bse118I	RCCGGY	2 cut(s)	1208, 1570
Bse1I	ACTGG	3 cut(s)	472, 2006, 2241
Bse21I	CCTNAGG	1 cut(s)	2103
Bse3DI	GCAATG	1 cut(s)	1794
BseAI	TCCGGA	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	674, 1300, 1784
BseDI	CCNNGG	8 cut(s)	186, 339, 808, 1771, 1782, 2018, 2397, 2476
BseGI	GGATG	8 cut(s)	262, 387, 711, 1308, 1741, 1975, 2010, 2347
BseLI	CCNNNNNNNGG	2 cut(s)	340, 1045
BseMI	GCAATG	1 cut(s)	1794
BseMII	CTCAG	9 cut(s)	854, 876, 916, 922, 1868, 2099, 2117, 2286, 2301
BseNI	ACTGG	3 cut(s)	472, 2006, 2241
BseRI	GAGGAG	9 cut(s)	218, 223, 371, 407, 487, 902, 2091, 2253, 2398
BseSI	GKGCMC	2 cut(s)	266, 1872
Bsh1236I	CGCG	4 cut(s)	120, 188, 551, 792
Bsh1285I	CGRYCG	1 cut(s)	825
BshFI	GGCC	6 cut(s)	264, 371, 483, 638, 2009, 2023
BshTI	ACCGGT	1 cut(s)	1208
BsiEI	CGRYCG	1 cut(s)	825
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	7 cut(s)	291, 565, 1173, 1209, 1571, 2369, 2476
BslFI	GGGAC	1 cut(s)	2189
BslI	CCNNNNNNNGG	2 cut(s)	340, 1045
BsmAI	GTCTC	4 cut(s)	296, 906, 1783, 2521
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	2189
BsnI	GGCC	6 cut(s)	264, 371, 483, 638, 2009, 2023
Bso31I	GGTCTC	1 cut(s)	1783
BsoBI	CYCGRG	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	1226
Bsp120I	GGGCCC	1 cut(s)	262
Bsp1286I	GDGCHC	4 cut(s)	266, 591, 1744, 1872
Bsp13I	TCCGGA	1 cut(s)	564
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp1720I	GCTNAGC	2 cut(s)	1854, 2085
Bsp19I	CCATGG	1 cut(s)	1771
BspANI	GGCC	6 cut(s)	264, 371, 483, 638, 2009, 2023
BspCNI	CTCAG	9 cut(s)	855, 877, 915, 921, 1867, 2098, 2116, 2285, 2302
BspEI	TCCGGA	1 cut(s)	564
BspFNI	CGCG	4 cut(s)	120, 188, 551, 792
BspHI	TCATGA	1 cut(s)	1977
BspLI	GGNNCC	6 cut(s)	177, 264, 265, 806, 2442, 2464
BspPI	GGATC	8 cut(s)	330, 594, 781, 867, 1200, 1296, 2435, 2448
BspT104I	TTCGAA	1 cut(s)	1226
BspTI	CTTAAG	1 cut(s)	2338
BspTNI	GGTCTC	1 cut(s)	1783
BsrBI	CCGCTC	1 cut(s)	2452
BsrDI	GCAATG	1 cut(s)	1794
BsrFI	RCCGGY	2 cut(s)	1208, 1570
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	472, 2006, 2241
BssAI	RCCGGY	2 cut(s)	1208, 1570
BssECI	CCNNGG	8 cut(s)	186, 339, 808, 1771, 1782, 2018, 2397, 2476
BssNI	GRCGYC	3 cut(s)	426, 507, 1556
BssT1I	CCWWGG	4 cut(s)	339, 1771, 2018, 2397
Bst2UI	CCWGG	3 cut(s)	674, 1300, 1784
Bst4CI	ACNGT	4 cut(s)	919, 1606, 2182, 2197
Bst6I	CTCTTC	4 cut(s)	495, 849, 927, 1502
BstACI	GRCGYC	3 cut(s)	426, 507, 1556
BstAFI	CTTAAG	1 cut(s)	2338
BstAPI	GCANNNNNTGC	1 cut(s)	2095
BstAUI	TGTACA	1 cut(s)	1017
BstBI	TTCGAA	1 cut(s)	1226
BstC8I	GCNNGC	4 cut(s)	882, 1673, 1824, 2486
BstDSI	CCRYGG	2 cut(s)	186, 1771
BstF5I	GGATG	8 cut(s)	262, 387, 711, 1308, 1741, 1975, 2010, 2347
BstFNI	CGCG	4 cut(s)	120, 188, 551, 792
BstHHI	GCGC	3 cut(s)	122, 553, 1165
BstMAI	GTCTC	4 cut(s)	296, 906, 1783, 2521
BstMCI	CGRYCG	1 cut(s)	825
BstNI	CCWGG	3 cut(s)	674, 1300, 1784
BstNSI	RCATGY	2 cut(s)	1850, 2204
BstSCI	CCNGG	5 cut(s)	290, 672, 1298, 1782, 2475
BstSFI	CTRYAG	1 cut(s)	2404
BstSLI	GKGCMC	2 cut(s)	266, 1872
BstUI	CGCG	4 cut(s)	120, 188, 551, 792
BstV2I	GAAGAC	3 cut(s)	435, 1062, 1941
BstX2I	RGATCY	3 cut(s)	786, 859, 2440
BstYI	RGATCY	3 cut(s)	786, 859, 2440
Bsu36I	CCTNAGG	1 cut(s)	2103
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	6 cut(s)	264, 371, 483, 638, 2009, 2023
BtgI	CCRYGG	2 cut(s)	186, 1771
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	8 cut(s)	262, 387, 711, 1308, 1741, 1975, 2010, 2347
BtsI	GCAGTG	1 cut(s)	2079
BtsIMutI	CAGTG	3 cut(s)	915, 1611, 2079
Cac8I	GCNNGC	4 cut(s)	882, 1673, 1824, 2486
CaiI	CAGNNNCTG	2 cut(s)	1045, 1610
CciI	TCATGA	1 cut(s)	1977
CfoI	GCGC	3 cut(s)	122, 553, 1165
Cfr10I	RCCGGY	2 cut(s)	1208, 1570
Cfr13I	GGNCC	7 cut(s)	262, 263, 370, 562, 637, 1206, 1632
Cfr42I	CCGCGG	1 cut(s)	189
CpoI	CGGWCCG	1 cut(s)	562
CseI	GACGC	4 cut(s)	313, 515, 637, 1355
Csp6I	GTAC	4 cut(s)	1018, 1426, 1761, 2198
CspAI	ACCGGT	1 cut(s)	1208
CspI	CGGWCCG	1 cut(s)	562
CviQI	GTAC	4 cut(s)	1018, 1426, 1761, 2198
DrdI	GACNNNNNNGTC	1 cut(s)	512
DriI	GACNNNNNGTC	1 cut(s)	1365
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	2 cut(s)	2007, 2021
Eam1104I	CTCTTC	4 cut(s)	495, 849, 927, 1502
Eam1105I	GACNNNNNGTC	1 cut(s)	1365
EarI	CTCTTC	4 cut(s)	495, 849, 927, 1502
EciI	GGCGGA	5 cut(s)	172, 181, 226, 1005, 1909
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	4 cut(s)	339, 1771, 2018, 2397
Eco24I	GRGCYC	3 cut(s)	266, 591, 1744
Eco31I	GGTCTC	1 cut(s)	1783
Eco32I	GATATC	1 cut(s)	1564
Eco47I	GGWCC	3 cut(s)	562, 1206, 1632
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	3 cut(s)	1079, 1488, 2430
Eco81I	CCTNAGG	1 cut(s)	2103
Eco88I	CYCGRG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	3 cut(s)	672, 1298, 1782
EcoRV	GATATC	1 cut(s)	1564
EcoT14I	CCWWGG	4 cut(s)	339, 1771, 2018, 2397
EcoT22I	ATGCAT	2 cut(s)	6, 2518
EcoT38I	GRGCYC	3 cut(s)	266, 591, 1744
ErhI	CCWWGG	4 cut(s)	339, 1771, 2018, 2397
Esp3I	CGTCTC	1 cut(s)	296
FalI	AAGNNNNNCTT	4 cut(s)	2118, 2150, 2403, 2435
FaqI	GGGAC	1 cut(s)	2189
FauI	CCCGC	2 cut(s)	843, 1664
FauNDI	CATATG	1 cut(s)	1582
FbaI	TGATCA	1 cut(s)	2052
FblI	GTMKAC	3 cut(s)	399, 651, 692
FokI	GGATG	8 cut(s)	269, 374, 718, 1315, 1748, 1982, 2017, 2334
FriOI	GRGCYC	3 cut(s)	266, 591, 1744
FspBI	CTAG	1 cut(s)	2510
FspI	TGCGCA	1 cut(s)	1164
GlaI	GCGC	3 cut(s)	121, 552, 1164
GsuI	CTGGAG	5 cut(s)	296, 455, 601, 731, 1884
HaeIII	GGCC	6 cut(s)	264, 371, 483, 638, 2009, 2023
HapII	CCGG	7 cut(s)	291, 565, 1173, 1209, 1571, 2369, 2476
HgaI	GACGC	4 cut(s)	313, 515, 637, 1355
HhaI	GCGC	3 cut(s)	122, 553, 1165
Hin1I	GRCGYC	3 cut(s)	426, 507, 1556
Hin6I	GCGC	3 cut(s)	120, 551, 1163
HinP1I	GCGC	3 cut(s)	120, 551, 1163
HincII	GTYRAC	5 cut(s)	400, 544, 652, 1387, 2329
HindII	GTYRAC	5 cut(s)	400, 544, 652, 1387, 2329
HindIII	AAGCTT	3 cut(s)	831, 1091, 1751
HpaI	GTTAAC	1 cut(s)	2329
HpaII	CCGG	7 cut(s)	291, 565, 1173, 1209, 1571, 2369, 2476
HphI	GGTGA	4 cut(s)	599, 808, 1093, 2062
HpyAV	CCTTC	6 cut(s)	277, 329, 416, 520, 745, 2454
HpyCH4III	ACNGT	4 cut(s)	919, 1606, 2182, 2197
HpyCH4IV	ACGT	6 cut(s)	426, 528, 540, 1361, 1556, 1982
HpySE526I	ACGT	6 cut(s)	426, 528, 540, 1361, 1556, 1982
Hsp92I	GRCGYC	3 cut(s)	426, 507, 1556
HspAI	GCGC	3 cut(s)	120, 551, 1163
Kpn2I	TCCGGA	1 cut(s)	564
Ksp22I	TGATCA	1 cut(s)	2052
KspAI	GTTAAC	1 cut(s)	2329
KspI	CCGCGG	1 cut(s)	189
LmnI	GCTCC	9 cut(s)	181, 231, 315, 474, 586, 599, 889, 1819, 2266
LweI	GCATC	6 cut(s)	135, 696, 1156, 1293, 1915, 2503
MaeI	CTAG	1 cut(s)	2510
MaeII	ACGT	6 cut(s)	426, 528, 540, 1361, 1556, 1982
MaeIII	GTNAC	3 cut(s)	67, 1357, 2387
MbiI	CCGCTC	1 cut(s)	2452
MfeI	CAATTG	1 cut(s)	815
MflI	RGATCY	3 cut(s)	786, 859, 2440
MhlI	GDGCHC	4 cut(s)	266, 591, 1744, 1872
MluCI	AATT	9 cut(s)	568, 815, 1197, 1229, 1243, 1487, 2205, 2321, 2356
MmeI	TCCRAC	6 cut(s)	447, 483, 782, 949, 1425, 1867
Mph1103I	ATGCAT	2 cut(s)	6, 2518
MroI	TCCGGA	1 cut(s)	564
MseI	TTAA	8 cut(s)	984, 1332, 1956, 2184, 2328, 2339, 2364, 2523
MslI	CAYNNNNRTG	1 cut(s)	2219
MspA1I	CMGCKG	4 cut(s)	188, 223, 850, 877
MspCI	CTTAAG	1 cut(s)	2338
MspI	CCGG	7 cut(s)	291, 565, 1173, 1209, 1571, 2369, 2476
MspR9I	CCNGG	5 cut(s)	292, 674, 1300, 1784, 2477
MunI	CAATTG	1 cut(s)	815
MvaI	CCWGG	3 cut(s)	674, 1300, 1784
MvnI	CGCG	4 cut(s)	120, 188, 551, 792
NciI	CCSGG	2 cut(s)	292, 2477
NcoI	CCATGG	1 cut(s)	1771
NdeI	CATATG	1 cut(s)	1582
NlaIV	GGNNCC	6 cut(s)	177, 264, 265, 806, 2442, 2464
NmeAIII	GCCGAG	3 cut(s)	142, 182, 933
NmuCI	GTSAC	1 cut(s)	1357
NsbI	TGCGCA	1 cut(s)	1164
NsiI	ATGCAT	2 cut(s)	6, 2518
NspI	RCATGY	2 cut(s)	1850, 2204
NspV	TTCGAA	1 cut(s)	1226
PagI	TCATGA	1 cut(s)	1977
PcsI	WCGNNNNNNNCGW	4 cut(s)	399, 510, 513, 657
PflMI	CCANNNNNTGG	1 cut(s)	1045
PfoI	TCCNGGA	3 cut(s)	290, 672, 1298
PinAI	ACCGGT	1 cut(s)	1208
Ple19I	CGATCG	1 cut(s)	825
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	3 cut(s)	672, 1298, 1782
PspGI	CCWGG	3 cut(s)	672, 1298, 1782
PspN4I	GGNNCC	6 cut(s)	177, 264, 265, 806, 2442, 2464
PspOMI	GGGCCC	1 cut(s)	262
PspPI	GGNCC	7 cut(s)	262, 263, 370, 562, 637, 1206, 1632
PsrI	GAACNNNNNNTAC	2 cut(s)	1258, 1290
PstNI	CAGNNNCTG	2 cut(s)	1045, 1610
PsuI	RGATCY	3 cut(s)	786, 859, 2440
PvuI	CGATCG	1 cut(s)	825
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	4 cut(s)	1019, 1427, 1762, 2199
RsaNI	GTAC	4 cut(s)	1018, 1426, 1761, 2198
RseI	CAYNNNNRTG	1 cut(s)	2219
Rsr2I	CGGWCCG	1 cut(s)	562
RsrII	CGGWCCG	1 cut(s)	562
SacI	GAGCTC	1 cut(s)	591
SacII	CCGCGG	1 cut(s)	189
SalI	GTCGAC	2 cut(s)	398, 650
SaqAI	TTAA	8 cut(s)	984, 1332, 1956, 2184, 2328, 2339, 2364, 2523
Sau96I	GGNCC	7 cut(s)	262, 263, 370, 562, 637, 1206, 1632
ScrFI	CCNGG	5 cut(s)	292, 674, 1300, 1784, 2477
SduI	GDGCHC	4 cut(s)	266, 591, 1744, 1872
SfaNI	GCATC	6 cut(s)	135, 696, 1156, 1293, 1915, 2503
SfcI	CTRYAG	1 cut(s)	2404
Sfr303I	CCGCGG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	1226
SgrBI	CCGCGG	1 cut(s)	189
SgrDI	CGTCGACG	1 cut(s)	398
SinI	GGWCC	3 cut(s)	562, 1206, 1632
SmiMI	CAYNNNNRTG	1 cut(s)	2219
SmlI	CTYRAG	6 cut(s)	437, 641, 698, 1873, 2338, 2531
SmoI	CTYRAG	6 cut(s)	437, 641, 698, 1873, 2338, 2531
Sse9I	AATT	9 cut(s)	568, 815, 1197, 1229, 1243, 1487, 2205, 2321, 2356
SspI	AATATT	2 cut(s)	1073, 2094
SspMI	CTAG	1 cut(s)	2510
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	5 cut(s)	290, 672, 1298, 1782, 2475
StyI	CCWWGG	4 cut(s)	339, 1771, 2018, 2397
TaaI	ACNGT	4 cut(s)	919, 1606, 2182, 2197
TaiI	ACGT	6 cut(s)	429, 531, 543, 1364, 1559, 1985
TaqII	GACCGA	5 cut(s)	550, 800, 815, 1074, 1620
TasI	AATT	9 cut(s)	568, 815, 1197, 1229, 1243, 1487, 2205, 2321, 2356
TatI	WGTACW	2 cut(s)	1017, 1760
TauI	GCSGC	7 cut(s)	188, 880, 900, 960, 1623, 1802, 2455
Tru1I	TTAA	8 cut(s)	984, 1332, 1956, 2184, 2328, 2339, 2364, 2523
Tru9I	TTAA	8 cut(s)	984, 1332, 1956, 2184, 2328, 2339, 2364, 2523
TscAI	CASTG	3 cut(s)	922, 1611, 2086
TseFI	GTSAC	1 cut(s)	1357
Tsp45I	GTSAC	1 cut(s)	1357
TspDTI	ATGAA	7 cut(s)	376, 1171, 1520, 1544, 1648, 1966, 2049
TspGWI	ACGGA	6 cut(s)	24, 168, 466, 763, 963, 1122
TspRI	CASTG	3 cut(s)	922, 1611, 2086
Van91I	CCANNNNNTGG	1 cut(s)	1045
Vha464I	CTTAAG	1 cut(s)	2338
VpaK11BI	GGWCC	3 cut(s)	562, 1206, 1632
XapI	RAATTY	2 cut(s)	1487, 2356
XbaI	TCTAGA	1 cut(s)	2509
XceI	RCATGY	2 cut(s)	1850, 2204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	732
XmiI	GTMKAC	3 cut(s)	399, 651, 692
XspI	CTAG	1 cut(s)	2510
ZraI	GACGTC	2 cut(s)	427, 1557
Zsp2I	ATGCAT	2 cut(s)	6, 2518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.