Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009549

Physical Location & Seq

Genomic Coordinates Reverse (-)

59189400 .. 59191332

Gene Structure 1933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGTGTTCAGTTTTAGAGGATCAATTTTCTAGGATGCAGACCGCCAACCATTTGTTGCTGATTAAGGACTATGTGAGCTTGTTAGGTGTGACTTTGCGGAGGTATGGATATTTGGTTGATCCTTTGCTTGATGTGTTGAGCAAGCACAGGGATAAGTACCATGAGTTGCTATTATCGGATTGTAGAAAGCAGATTACGGAAGCACTTTCTGCGGATAAGTTTGATCAGATGTTGATGAAGAAAGAGTATGAGTATTCCATGAATGTGCTTTCGTTTCAGTTACAAACTTCTGATATCACTCCAGCTTTTCCTTATGTTGCACCCTTTAGCTCTACGGTGCCTGATTGTTGCCGCATTGTGCGGTCTTTTATTGAGGATTCTGTGAGTTTCATGTCCTATGGTGGGCAGCTTGATTTCTTTGAGGTGGTGAAGAAGTATTTGGATCGGCTATTAAGTGAGGATTTAGATGGCACTCTTGTGAAGCTTATCAATACATCCATCAGTGCGGTCTCCCAGGCAATGCAGGTGGCTGCTAATATGGCTGTCATGGAGAGAGCTTGTGATTTCTTCTTCCGACATGCTGCTCAGCTTTCTGGCATTCCCTTGAGAATGGTGGAGAGGGGCAGGAGGCAGTTTCCTCTATGTAAAGCCCGCGATGCTGTAGAAGACATACTCTCAGGGTTGCTTAAACAAAAAGTTGATGGGTTCATGACACTGATGGAGAATGTGAACTGGATGGCTGATGAGACTCTGCAGAATGGGAATGAGTATGTGAATGAGCTGATCATATATTTGGAAACTCTGGTTTCCACTGCGGAGCAGATATTGCCACCAAATGTTCTTAAACGAGTTATACAAGATGTCCTTTCTCATATATCGGAGAAGATAGTTGGGGCTTTACTTGGGGACTCAGTTAAGAGGTTTACTGTAAATGCAATTATGAGCATCGATGTAGACATTCGGGTATTGGAATCTTTTGCAGATAATCAAGCACCTTTACTGTCAGAGGAGGATGCAAGTCAGTTGAAATCGGCACTTGCTGAGTCAAGGCAGTTGGTTAATTTACTCTTAAGCAACAATCCAGAGACTTTTCTTAATCCTGTAATCAGGGAGAGGAGTTACAATAACTTGGATTATAGAAAAGTAGTGATTATTTCAGAAAAATTGAGAGATCCTTCAGAGCGGCTATTTGGAACTTTTGGAAGCAGGGGAAGCAGGCAGAACCCAAAGAAGAAATCTCTAGATTTGTTGATAAAAAGACTCAAGGATATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009875 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0030054 GO:0030154 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0048468 GO:0048544 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060321 GO:0060560 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec15

Protein Analysis

425

Amino Acids

48.34

Weight (kDa)

5.74

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec15_C	PF04091	41 - 388	5.1e-92	Exocyst complex subunit Sec15 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02350 AT4G02350
fragaria_vesca	FvH4_2g25910 FvH4_2g25910 FvH4_2g25910 FvH4_2g25910
malus_domestica	MD03G1290500.v1.1 MD11G1308000.v1.1
prunus_persica	Prupe.8G263500_v2.0.a1
pyrus_communis	pycom03g22980 pycom11g26930
rosa_chinensis	RchiOBHm_Chr6g0294231
rosa_laevigata	RLG00000011888
rosa_multiflora	Rmu_co8430431.1_g000001 Rmu_sc0002462.1_g000003
rosa_roxburghii	Rroxscaffold_7G00173530
rosa_rugosa	Rorug06G0242700
rosa_samantha	Rh6AG354900 Rh6BG361800 Rh6CG369100 Rh6DG355900
rosa_wichuraiana	Rw6G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	514
Acc36I	ACCTGC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	1183
AccI	GTMKAC	1 cut(s)	954
AccII	CGCG	1 cut(s)	654
AciI	CCGC	9 cut(s)	42, 97, 212, 352, 361, 506, 652, 815, 1183
AclWI	GGATC	4 cut(s)	27, 113, 450, 1166
AcuI	CTGAAG	1 cut(s)	1161
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	402
AflII	CTTAAG	1 cut(s)	1069
AgsI	TTSAA	1 cut(s)	1027
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	8 cut(s)	78, 305, 330, 409, 484, 557, 589, 781
AluI	AGCT	8 cut(s)	78, 305, 330, 409, 484, 557, 589, 781
Alw26I	GTCTC	3 cut(s)	514, 740, 1079
AlwI	GGATC	4 cut(s)	27, 113, 450, 1166
ApeKI	GCWGC	3 cut(s)	406, 530, 581
AsuHPI	GGTGA	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	418, 517, 568
BccI	CCATC	5 cut(s)	461, 506, 695, 712, 730
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	2 cut(s)	223, 783
BcoDI	GTCTC	3 cut(s)	514, 740, 1079
BfaI	CTAG	2 cut(s)	30, 1241
BfmI	CTRYAG	2 cut(s)	660, 752
BfrI	CTTAAG	1 cut(s)	1069
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	5 cut(s)	352, 407, 531, 582, 1184
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	5 cut(s)	353, 408, 532, 583, 1185
Bme1390I	CCNGG	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	4 cut(s)	24, 646, 954, 1003
BpiI	GAAGAC	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	2 cut(s)	625, 1247
Bsa29I	ATCGAT	1 cut(s)	948
BsaI	GGTCTC	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	737
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	948
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	4 cut(s)	39, 494, 741, 1018
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	4 cut(s)	599, 690, 924, 1032
BseNI	ACTGG	1 cut(s)	737
BseRI	GAGGAG	2 cut(s)	1022, 1129
BseXI	GCAGC	3 cut(s)	418, 517, 568
Bsh1236I	CGCG	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	948
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmAI	GTCTC	3 cut(s)	514, 740, 1079
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	1 cut(s)	597
Bso31I	GGTCTC	1 cut(s)	514
Bsp143I	GATC	6 cut(s)	19, 118, 223, 442, 783, 1171
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	9 cut(s)	42, 97, 212, 352, 361, 506, 652, 815, 1183
BspCNI	CTCAG	4 cut(s)	598, 689, 923, 1033
BspDI	ATCGAT	1 cut(s)	948
BspFNI	CGCG	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	756
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	4 cut(s)	27, 113, 450, 1166
BspT107I	GGYRCC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	1069
BspTNI	GGTCTC	1 cut(s)	514
BsrBI	CCGCTC	1 cut(s)	1183
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	737
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	6 cut(s)	19, 118, 223, 442, 783, 1171
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	3 cut(s)	337, 928, 1002
BstAFI	CTTAAG	1 cut(s)	1069
BstAPI	GCANNNNNTGC	2 cut(s)	209, 826
BstC8I	GCNNGC	3 cut(s)	143, 652, 1217
BstDEI	CTNAG	4 cut(s)	585, 676, 910, 1041
BstF5I	GGATG	4 cut(s)	39, 494, 741, 1018
BstFNI	CGCG	1 cut(s)	654
BstKTI	GATC	6 cut(s)	22, 121, 226, 445, 786, 1174
BstMAI	GTCTC	3 cut(s)	514, 740, 1079
BstMBI	GATC	6 cut(s)	19, 118, 223, 442, 783, 1171
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 539, 656, 826, 1212
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	2 cut(s)	660, 752
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	3 cut(s)	418, 517, 568
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	1171
BstYI	RGATCY	1 cut(s)	1171
Bsu15I	ATCGAT	1 cut(s)	948
BsuTUI	ATCGAT	1 cut(s)	948
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	4 cut(s)	39, 494, 741, 1018
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	3 cut(s)	508, 713, 810
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	143, 652, 1217
CciI	TCATGA	1 cut(s)	708
ClaI	ATCGAT	1 cut(s)	948
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	6 cut(s)	161, 259, 391, 547, 578, 709
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	4 cut(s)	585, 676, 910, 1041
DpnI	GATC	6 cut(s)	21, 120, 225, 444, 785, 1173
DpnII	GATC	6 cut(s)	19, 118, 223, 442, 783, 1171
Eco31I	GGTCTC	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	1161
EcoRII	CCWGG	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	295
FaeI	CATG	6 cut(s)	164, 262, 394, 550, 581, 712
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	6 cut(s)	160, 258, 390, 546, 577, 708
FauI	CCCGC	1 cut(s)	659
FbaI	TGATCA	2 cut(s)	223, 783
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	5 cut(s)	352, 407, 531, 582, 1184
FokI	GGATG	4 cut(s)	46, 481, 748, 1025
Fsp4HI	GCNGC	5 cut(s)	352, 407, 531, 582, 1184
FspBI	CTAG	2 cut(s)	30, 1241
GluI	GCNGC	5 cut(s)	352, 407, 531, 582, 1184
GsuI	CTGGAG	1 cut(s)	285
Hin1II	CATG	6 cut(s)	164, 262, 394, 550, 581, 712
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	6 cut(s)	377, 748, 908, 971, 1043, 1260
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	3 cut(s)	730, 924, 955
Hpy188I	TCNGA	8 cut(s)	178, 228, 292, 575, 880, 1006, 1159, 1180
Hpy188III	TCNNGA	3 cut(s)	709, 1082, 1241
Hpy8I	GTNNAC	3 cut(s)	730, 924, 955
HpyAV	CCTTC	1 cut(s)	1185
HpyCH4III	ACNGT	3 cut(s)	337, 928, 1002
HpyCH4V	TGCA	7 cut(s)	37, 320, 523, 754, 935, 980, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 539, 656, 826, 1212
HpyF3I	CTNAG	4 cut(s)	585, 676, 910, 1041
Hsp92II	CATG	6 cut(s)	164, 262, 394, 550, 581, 712
Ksp22I	TGATCA	2 cut(s)	223, 783
Kzo9I	GATC	6 cut(s)	19, 118, 223, 442, 783, 1171
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	3 cut(s)	418, 517, 568
LweI	GCATC	4 cut(s)	24, 646, 954, 1003
MaeI	CTAG	2 cut(s)	30, 1241
MaeIII	GTNAC	3 cut(s)	88, 279, 1118
MalI	GATC	6 cut(s)	21, 120, 225, 444, 785, 1173
MbiI	CCGCTC	1 cut(s)	1183
MboI	GATC	6 cut(s)	19, 118, 223, 442, 783, 1171
MboII	GAAGA	7 cut(s)	250, 442, 559, 562, 677, 895, 1243
MflI	RGATCY	1 cut(s)	1171
MluCI	AATT	4 cut(s)	23, 936, 1060, 1163
MlyI	GAGTC	4 cut(s)	742, 902, 1052, 1254
MmeI	TCCRAC	1 cut(s)	598
MseI	TTAA	8 cut(s)	63, 452, 687, 843, 915, 1059, 1070, 1095
MslI	CAYNNNNRTG	2 cut(s)	263, 476
MspCI	CTTAAG	1 cut(s)	1069
MspR9I	CCNGG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	5 cut(s)	209, 539, 656, 826, 1212
NdeII	GATC	6 cut(s)	19, 118, 223, 442, 783, 1171
NlaIII	CATG	6 cut(s)	164, 262, 394, 550, 581, 712
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	581
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	1 cut(s)	708
PaqCI	CACCTGC	1 cut(s)	514
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	377, 971
PkrI	GCNGC	5 cut(s)	353, 408, 532, 583, 1185
PleI	GAGTC	4 cut(s)	742, 902, 1051, 1254
PpsI	GAGTC	4 cut(s)	742, 902, 1051, 1254
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	1171
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	2 cut(s)	263, 476
SaqAI	TTAA	8 cut(s)	63, 452, 687, 843, 915, 1059, 1070, 1095
SatI	GCNGC	5 cut(s)	352, 407, 531, 582, 1184
Sau3AI	GATC	6 cut(s)	19, 118, 223, 442, 783, 1171
SchI	GAGTC	4 cut(s)	742, 902, 1052, 1254
ScrFI	CCNGG	1 cut(s)	515
SfaNI	GCATC	4 cut(s)	24, 646, 954, 1003
SfcI	CTRYAG	2 cut(s)	660, 752
SmiMI	CAYNNNNRTG	2 cut(s)	263, 476
SmlI	CTYRAG	3 cut(s)	604, 1069, 1262
SmoI	CTYRAG	3 cut(s)	604, 1069, 1262
Sse9I	AATT	4 cut(s)	23, 936, 1060, 1163
SsiI	CCGC	9 cut(s)	42, 97, 212, 352, 361, 506, 652, 815, 1183
SspMI	CTAG	2 cut(s)	30, 1241
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	337, 928, 1002
TaqI	TCGA	1 cut(s)	948
TasI	AATT	4 cut(s)	23, 936, 1060, 1163
TauI	GCSGC	2 cut(s)	354, 1186
TfiI	GAWTC	2 cut(s)	377, 971
Tru1I	TTAA	8 cut(s)	63, 452, 687, 843, 915, 1059, 1070, 1095
Tru9I	TTAA	8 cut(s)	63, 452, 687, 843, 915, 1059, 1070, 1095
TscAI	CASTG	3 cut(s)	508, 720, 817
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	3 cut(s)	406, 530, 581
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	4 cut(s)	251, 275, 379, 697
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	3 cut(s)	508, 720, 817
Vha464I	CTTAAG	1 cut(s)	1069
XbaI	TCTAGA	1 cut(s)	1240
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	954
XspI	CTAG	2 cut(s)	30, 1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.