Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8430431.1

Orthogroup ID

OG0009549

Physical Location & Seq

Genomic Coordinates Forward (+)

43 .. 1464

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8430431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atgactccgtttcttgagtctcatcagactttctttgcgcaaatcgccgggttttttattgtggaggatagagttgtgaggaccggaggtggattgatatcgaaattggaggttgagaatctgtgggagactgctgtgagtaaaatgtgttcagttttagaggatcaattttctaggatgcagactgccaaccatttgttgctgatcaaggactatgtgagcttgttaggtgtgactttgcggaggtatggatatttggttgatcctttgcttgatgtgttgagcaagcacagggataagtaccatgagttgctattatcggattgtagaaagcagattacggaagcgctttctgcggataagtttgatcagatgttgatgaagaaagagtatgagtattccatgaatgtgctttcgtttcagttacagacttctgatatcacaccagcttttccttatgttgcaccctttagctctacggtgcctgattgttgccgcattgtgcggtcttttattgaggattctgtgagtttcatgtcctatggtgggcagcttgatttctttgaggttgtgaagaagtatttggatcggctattaagtgaggatttagatggcgctcttgtgaagcttatcaatacatctgtcagtgccgtctccccggcaatgcaggtggctgctaatatggctgtcatggagagagcttgtgatttcttcttccgacatgctgctcagctttctggcattcctttgagaatggtggagaggggcaggaggcagtttccgctatgtaaagcccgtgatgctgcagaagacatactctcagggttgcttaaacaaaaagttgatgggttcatgacactgatggagagtgtgaactggatggctgatgagactctgcagaatgggaatgagtatgtgaatgagctgatcatatatttggaaactctggtttccgctgcacagcagatattgccaccaaatgttcttaaacgagttatacaagatgttctttctcatatatcggagaagatagttggcgctttacttggggactcagttaagaggtttactgtaaatgcaattatgagcatcgatgtggacattcgggtattcgaatcttttgcagataatcaagcacctttactgtcagaggaggatgcaaatcagttgaaatcggcacttgctgaatcaaggcagttggttaatttactcttaagcaacaatccagagacttttcttaatcctgtaatcagggagaggagttataataacttggattatagaaaagtagtgattatttcagaaaaattgagagatccttcagagcggctatttggaacttttggaagcaggggaagcaggcagaacccaaagaagaaatctctagatttgttgataaaaagactcaaggatgtgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009875 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0030054 GO:0030154 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0048468 GO:0048544 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060321 GO:0060560 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec15

Protein Analysis

473

Amino Acids

53.61

Weight (kDa)

5.72

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02350 AT4G02350
fragaria_vesca	FvH4_2g25910 FvH4_2g25910 FvH4_2g25910 FvH4_2g25910
malus_domestica	MD03G1290500.v1.1 MD11G1308000.v1.1
prunus_persica	Prupe.8G263500_v2.0.a1
pyrus_communis	pycom03g22980 pycom11g26930
rosa_chinensis	RchiOBHm_Chr6g0294231
rosa_laevigata	RLG00000011888
rosa_multiflora	Rmu_co8430431.1_g000001 Rmu_sc0002462.1_g000003
rosa_roxburghii	Rroxscaffold_7G00173530
rosa_rugosa	Rorug06G0242700
rosa_samantha	Rh6AG354900 Rh6BG361800 Rh6CG369100 Rh6DG355900
rosa_wichuraiana	Rw6G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1266
AarI	CACCTGC	1 cut(s)	658
Acc16I	TGCGCA	1 cut(s)	39
Acc36I	ACCTGC	1 cut(s)	658
AccB1I	GGYRCC	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	1327
AciI	CCGC	7 cut(s)	241, 356, 496, 505, 782, 954, 1327
AclWI	GGATC	4 cut(s)	171, 257, 594, 1310
AcuI	CTGAAG	1 cut(s)	1305
AfaI	GTAC	1 cut(s)	302
AfeI	AGCGCT	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	546
AflII	CTTAAG	1 cut(s)	1213
AgsI	TTSAA	1 cut(s)	1171
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	8 cut(s)	222, 449, 474, 553, 628, 701, 733, 925
AluI	AGCT	8 cut(s)	222, 449, 474, 553, 628, 701, 733, 925
Alw26I	GTCTC	5 cut(s)	24, 122, 658, 884, 1223
AlwI	GGATC	4 cut(s)	171, 257, 594, 1310
Aor51HI	AGCGCT	1 cut(s)	348
ApeKI	GCWGC	5 cut(s)	550, 674, 725, 803, 956
AspLEI	GCGC	4 cut(s)	40, 349, 617, 1040
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	2 cut(s)	49, 659
AsuII	TTCGAA	1 cut(s)	1113
AvaII	GGWCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	816
BbvI	GCAGC	5 cut(s)	562, 661, 712, 790, 943
BccI	CCATC	4 cut(s)	605, 839, 856, 874
BceAI	ACGGC	1 cut(s)	635
BcgI	CGANNNNNNTGC	2 cut(s)	1103, 1137
BclI	TGATCA	3 cut(s)	204, 367, 927
BcnI	CCSGG	2 cut(s)	49, 659
BcoDI	GTCTC	5 cut(s)	24, 122, 658, 884, 1223
BfaI	CTAG	2 cut(s)	174, 1385
BfmI	CTRYAG	2 cut(s)	804, 896
BfoI	RGCGCY	3 cut(s)	350, 618, 1041
BfrI	CTTAAG	1 cut(s)	1213
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	7 cut(s)	496, 551, 675, 726, 804, 957, 1328
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	7 cut(s)	497, 552, 676, 727, 805, 958, 1329
Bme1390I	CCNGG	2 cut(s)	49, 659
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	2 cut(s)	49, 659
BmsI	GCATC	4 cut(s)	168, 790, 1098, 1147
BpiI	GAAGAC	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	729
Bpu14I	TTCGAA	1 cut(s)	1113
BpuEI	CTTGAG	2 cut(s)	35, 1391
BpuMI	CCSGG	2 cut(s)	49, 659
Bsa29I	ATCGAT	1 cut(s)	1092
BsaBI	GATNNNNATC	2 cut(s)	97, 1161
BsaJI	CCNNGG	1 cut(s)	657
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	1 cut(s)	881
Bse3DI	GCAATG	1 cut(s)	669
Bse8I	GATNNNNATC	2 cut(s)	97, 1161
BseCI	ATCGAT	1 cut(s)	1092
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	4 cut(s)	183, 885, 1162, 1417
BseJI	GATNNNNATC	2 cut(s)	97, 1161
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	3 cut(s)	743, 834, 1068
BseNI	ACTGG	1 cut(s)	881
BseRI	GAGGAG	2 cut(s)	1166, 1273
BseXI	GCAGC	5 cut(s)	562, 661, 712, 790, 943
BsgI	GTGCAG	1 cut(s)	942
BshNI	GGYRCC	1 cut(s)	481
BshVI	ATCGAT	1 cut(s)	1092
BsiSI	CCGG	3 cut(s)	48, 84, 659
BslFI	GGGAC	1 cut(s)	1064
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	5 cut(s)	24, 122, 658, 884, 1223
BsmBI	CGTCTC	1 cut(s)	658
BsmFI	GGGAC	1 cut(s)	1064
BsmI	GAATGC	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	1113
Bsp143I	GATC	7 cut(s)	163, 204, 262, 367, 586, 927, 1315
Bsp1720I	GCTNAGC	1 cut(s)	729
BspACI	CCGC	7 cut(s)	241, 356, 496, 505, 782, 954, 1327
BspCNI	CTCAG	3 cut(s)	742, 833, 1067
BspDI	ATCGAT	1 cut(s)	1092
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	2 cut(s)	808, 900
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	4 cut(s)	171, 257, 594, 1310
BspT104I	TTCGAA	1 cut(s)	1113
BspT107I	GGYRCC	1 cut(s)	481
BspTI	CTTAAG	1 cut(s)	1213
BsrBI	CCGCTC	1 cut(s)	1327
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	881
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	7 cut(s)	163, 204, 262, 367, 586, 927, 1315
Bst4CI	ACNGT	3 cut(s)	481, 1072, 1146
BstAFI	CTTAAG	1 cut(s)	1213
BstAPI	GCANNNNNTGC	1 cut(s)	970
BstBI	TTCGAA	1 cut(s)	1113
BstC8I	GCNNGC	2 cut(s)	287, 1361
BstDEI	CTNAG	3 cut(s)	729, 820, 1054
BstF5I	GGATG	4 cut(s)	183, 885, 1162, 1417
BstH2I	RGCGCY	3 cut(s)	350, 618, 1041
BstHHI	GCGC	4 cut(s)	40, 349, 617, 1040
BstKTI	GATC	7 cut(s)	166, 207, 265, 370, 589, 930, 1318
BstMAI	GTCTC	5 cut(s)	24, 122, 658, 884, 1223
BstMBI	GATC	7 cut(s)	163, 204, 262, 367, 586, 927, 1315
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 353, 683, 781, 800, 970, 1356
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	47, 657
BstSFI	CTRYAG	2 cut(s)	804, 896
BstV1I	GCAGC	5 cut(s)	562, 661, 712, 790, 943
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	1 cut(s)	1315
BstYI	RGATCY	1 cut(s)	1315
Bsu15I	ATCGAT	1 cut(s)	1092
BsuTUI	ATCGAT	1 cut(s)	1092
BtsCI	GGATG	4 cut(s)	183, 885, 1162, 1417
BtsIMutI	CAGTG	2 cut(s)	652, 857
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	2 cut(s)	287, 1361
CciI	TCATGA	1 cut(s)	852
CfoI	GCGC	4 cut(s)	40, 349, 617, 1040
Cfr13I	GGNCC	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	1092
Csp6I	GTAC	1 cut(s)	301
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	6 cut(s)	305, 403, 535, 691, 722, 853
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	729, 820, 1054
DpnI	GATC	7 cut(s)	165, 206, 264, 369, 588, 929, 1317
DpnII	GATC	7 cut(s)	163, 204, 262, 367, 586, 927, 1315
Eco32I	GATATC	2 cut(s)	99, 439
Eco47I	GGWCC	1 cut(s)	81
Eco47III	AGCGCT	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	1305
EcoRV	GATATC	2 cut(s)	99, 439
Esp3I	CGTCTC	1 cut(s)	658
FaeI	CATG	6 cut(s)	308, 406, 538, 694, 725, 856
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FaqI	GGGAC	1 cut(s)	1064
FatI	CATG	6 cut(s)	304, 402, 534, 690, 721, 852
FbaI	TGATCA	3 cut(s)	204, 367, 927
Fnu4HI	GCNGC	7 cut(s)	496, 551, 675, 726, 804, 957, 1328
FokI	GGATG	3 cut(s)	190, 892, 1169
Fsp4HI	GCNGC	7 cut(s)	496, 551, 675, 726, 804, 957, 1328
FspBI	CTAG	2 cut(s)	174, 1385
FspI	TGCGCA	1 cut(s)	39
GlaI	GCGC	4 cut(s)	39, 348, 616, 1039
GluI	GCNGC	7 cut(s)	496, 551, 675, 726, 804, 957, 1328
HaeII	RGCGCY	3 cut(s)	350, 618, 1041
HapII	CCGG	3 cut(s)	48, 84, 659
HhaI	GCGC	4 cut(s)	40, 349, 617, 1040
Hin1II	CATG	6 cut(s)	308, 406, 538, 694, 725, 856
Hin6I	GCGC	4 cut(s)	38, 347, 615, 1038
HinP1I	GCGC	4 cut(s)	38, 347, 615, 1038
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	9 cut(s)	4, 17, 118, 521, 892, 1052, 1115, 1187, 1404
HpaII	CCGG	3 cut(s)	48, 84, 659
Hpy166II	GTNNAC	3 cut(s)	874, 1068, 1099
Hpy188I	TCNGA	9 cut(s)	27, 322, 372, 436, 719, 1024, 1150, 1303, 1324
Hpy188III	TCNNGA	4 cut(s)	14, 853, 1226, 1385
Hpy8I	GTNNAC	3 cut(s)	874, 1068, 1099
HpyAV	CCTTC	1 cut(s)	1329
HpyCH4III	ACNGT	3 cut(s)	481, 1072, 1146
HpyCH4V	TGCA	9 cut(s)	181, 464, 667, 806, 898, 959, 1079, 1124, 1160
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 353, 683, 781, 800, 970, 1356
HpyF3I	CTNAG	3 cut(s)	729, 820, 1054
Hsp92II	CATG	6 cut(s)	308, 406, 538, 694, 725, 856
HspAI	GCGC	4 cut(s)	38, 347, 615, 1038
Ksp22I	TGATCA	3 cut(s)	204, 367, 927
Kzo9I	GATC	7 cut(s)	163, 204, 262, 367, 586, 927, 1315
Lsp1109I	GCAGC	5 cut(s)	562, 661, 712, 790, 943
LweI	GCATC	4 cut(s)	168, 790, 1098, 1147
MaeI	CTAG	2 cut(s)	174, 1385
MaeIII	GTNAC	2 cut(s)	232, 423
MalI	GATC	7 cut(s)	165, 206, 264, 369, 588, 929, 1317
MbiI	CCGCTC	1 cut(s)	1327
MboI	GATC	7 cut(s)	163, 204, 262, 367, 586, 927, 1315
MboII	GAAGA	7 cut(s)	394, 586, 703, 706, 821, 1039, 1387
MflI	RGATCY	1 cut(s)	1315
MluCI	AATT	5 cut(s)	104, 167, 1080, 1204, 1307
MlyI	GAGTC	4 cut(s)	26, 886, 1046, 1398
MmeI	TCCRAC	1 cut(s)	742
MseI	TTAA	8 cut(s)	596, 831, 987, 1059, 1203, 1214, 1239, 1420
MslI	CAYNNNNRTG	2 cut(s)	407, 1094
MspA1I	CMGCKG	1 cut(s)	956
MspCI	CTTAAG	1 cut(s)	1213
MspI	CCGG	3 cut(s)	48, 84, 659
MspR9I	CCNGG	2 cut(s)	49, 659
Mva1269I	GAATGC	1 cut(s)	741
MwoI	GCNNNNNNNGC	7 cut(s)	44, 353, 683, 781, 800, 970, 1356
NciI	CCSGG	2 cut(s)	49, 659
NdeII	GATC	7 cut(s)	163, 204, 262, 367, 586, 927, 1315
NlaIII	CATG	6 cut(s)	308, 406, 538, 694, 725, 856
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	232
NsbI	TGCGCA	1 cut(s)	39
NspI	RCATGY	1 cut(s)	725
NspV	TTCGAA	1 cut(s)	1113
PagI	TCATGA	1 cut(s)	852
PaqCI	CACCTGC	1 cut(s)	658
PctI	GAATGC	1 cut(s)	741
PfeI	GAWTC	4 cut(s)	118, 521, 1115, 1187
PkrI	GCNGC	7 cut(s)	497, 552, 676, 727, 805, 958, 1329
PleI	GAGTC	4 cut(s)	25, 886, 1046, 1398
PpsI	GAGTC	4 cut(s)	25, 886, 1046, 1398
PsiI	TTATAA	1 cut(s)	1266
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	1 cut(s)	81
PsrI	GAACNNNNNNTAC	2 cut(s)	133, 165
PstI	CTGCAG	2 cut(s)	808, 900
PsuI	RGATCY	1 cut(s)	1315
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	2 cut(s)	407, 1094
SaqAI	TTAA	8 cut(s)	596, 831, 987, 1059, 1203, 1214, 1239, 1420
SatI	GCNGC	7 cut(s)	496, 551, 675, 726, 804, 957, 1328
Sau3AI	GATC	7 cut(s)	163, 204, 262, 367, 586, 927, 1315
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	4 cut(s)	26, 886, 1046, 1398
ScrFI	CCNGG	2 cut(s)	49, 659
SfaNI	GCATC	4 cut(s)	168, 790, 1098, 1147
SfcI	CTRYAG	2 cut(s)	804, 896
SfuI	TTCGAA	1 cut(s)	1113
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	407, 1094
SmlI	CTYRAG	3 cut(s)	14, 1213, 1406
SmoI	CTYRAG	3 cut(s)	14, 1213, 1406
Sse9I	AATT	5 cut(s)	104, 167, 1080, 1204, 1307
SsiI	CCGC	7 cut(s)	241, 356, 496, 505, 782, 954, 1327
SspMI	CTAG	2 cut(s)	174, 1385
StyD4I	CCNGG	2 cut(s)	47, 657
TaaI	ACNGT	3 cut(s)	481, 1072, 1146
TaqI	TCGA	3 cut(s)	101, 1092, 1113
TasI	AATT	5 cut(s)	104, 167, 1080, 1204, 1307
TauI	GCSGC	2 cut(s)	498, 1330
TfiI	GAWTC	4 cut(s)	118, 521, 1115, 1187
Tru1I	TTAA	8 cut(s)	596, 831, 987, 1059, 1203, 1214, 1239, 1420
Tru9I	TTAA	8 cut(s)	596, 831, 987, 1059, 1203, 1214, 1239, 1420
TscAI	CASTG	2 cut(s)	652, 864
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	5 cut(s)	550, 674, 725, 803, 956
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	4 cut(s)	395, 419, 523, 841
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	2 cut(s)	652, 864
Vha464I	CTTAAG	1 cut(s)	1213
VpaK11BI	GGWCC	1 cut(s)	81
XbaI	TCTAGA	1 cut(s)	1384
XceI	RCATGY	1 cut(s)	725
XspI	CTAG	2 cut(s)	174, 1385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.