Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005251

Physical Location & Seq

Genomic Coordinates Forward (+)

1056509 .. 1058474

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1010400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATGTTCCTCTTTTTTACTACAAATAATCACACAGACAATCGAAATGAACAAAAAAGGCGGAAGATTGCTGCCTGGGCCATAGCCTTTCTCTGTATAGGGACTTTTACCTTTGCATTTGCAGCTTCAGCTAAGGGCATTTCCAGCATTCTTCGCTTCACAGTGTGCGGAGTGTCTGGCGTTCTACTGCTGTGCTGCTTAATTGTGCTGACCTGTATTGATCAAGATGATACAAGGCACAGCTTTGGACACACTGGAGGTTTCAGTTGTCCATTTGTTCCATTTTTGCCTGCTGCTTGCATTCTCATAAATACCTACTTGCTAATTGGTCTCGGAGCTGCCACGTGGATCCGCGTCTCTGTATGGTTTGCCGTAGGAGCATTGGTATACTTGTTTTACGGGCGGAGCCACAGTTCACTTTACAATGCAGTTTATGTGTCCTCAGCTTATGCTAATGAGATTTATCGTTCCTCGTCAGACCACGCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

164

Amino Acids

17.92

Weight (kDa)

8.74

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_C	PF13906	88 - 138	3.2e-23	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03720
malus_domestica	MD12G1010300.v1.1 MD12G1010400.v1.1 MD14G1007500.v1.1
prunus_persica	Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1
pyrus_communis	pycom12g00800
rosa_chinensis	RchiOBHm_Chr3g0496181
rosa_laevigata	RLG00000022554
rosa_multiflora	Rmu_sc0003733.1_g000063 Rmu_sc0006695.1_g000009
rosa_roxburghii	Rroxscaffold_6G00389490
rosa_rugosa	Rorug03G0280100.1 Rorug03G0280200 Rorug03G0280300 Rorug03G0280300
rosa_samantha	Rh3AG327100 Rh3BG363300 Rh3CG360000 Rh3DG363200
rosa_wichuraiana	Rw3G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	2 cut(s)	354, 485
AciI	CCGC	5 cut(s)	61, 168, 352, 403, 485
AclWI	GGATC	2 cut(s)	343, 356
AcuI	CTGAAG	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	74
AloI	GAACNNNNNNTCC	2 cut(s)	397, 429
AluBI	AGCT	5 cut(s)	125, 131, 243, 338, 446
AluI	AGCT	5 cut(s)	125, 131, 243, 338, 446
Alw26I	GTCTC	2 cut(s)	335, 361
AlwI	GGATC	2 cut(s)	343, 356
AoxI	GGCC	2 cut(s)	78, 486
ApeKI	GCWGC	5 cut(s)	71, 122, 195, 293, 338
AspS9I	GGNCC	1 cut(s)	78
BamHI	GGATCC	1 cut(s)	348
BbrPI	CACGTG	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	5 cut(s)	58, 134, 182, 280, 325
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	335, 361
BfaI	CTAG	1 cut(s)	490
BisI	GCNGC	6 cut(s)	72, 123, 196, 294, 339, 486
BlsI	GCNGC	6 cut(s)	73, 124, 197, 295, 340, 487
Bme1390I	CCNGG	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	350, 407
BmrFI	CCNGG	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	2 cut(s)	132, 442
BsaAI	YACGTR	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	4 cut(s)	369, 397, 399, 427
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	5 cut(s)	58, 134, 182, 280, 325
Bsh1236I	CGCG	2 cut(s)	354, 485
BshFI	GGCC	2 cut(s)	80, 488
BslFI	GGGAC	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	335, 361
BsmBI	CGTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	2 cut(s)	147, 300
BsnI	GGCC	2 cut(s)	80, 488
Bso31I	GGTCTC	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	220, 348
BspACI	CCGC	5 cut(s)	61, 168, 352, 403, 485
BspANI	GGCC	2 cut(s)	80, 488
BspCNI	CTCAG	1 cut(s)	455
BspFNI	CGCG	2 cut(s)	354, 485
BspLI	GGNNCC	2 cut(s)	350, 407
BspPI	GGATC	2 cut(s)	343, 356
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	220, 348
BssNAI	GTATAC	1 cut(s)	388
Bst1107I	GTATAC	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	163, 413
BstBAI	YACGTR	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	291, 298
BstDEI	CTNAG	2 cut(s)	132, 442
BstFNI	CGCG	2 cut(s)	354, 485
BstKTI	GATC	2 cut(s)	223, 351
BstMAI	GTCTC	2 cut(s)	335, 361
BstMBI	GATC	2 cut(s)	220, 348
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 122, 128, 144, 153, 377
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstUI	CGCG	2 cut(s)	354, 485
BstV1I	GCAGC	5 cut(s)	58, 134, 182, 280, 325
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BstZ17I	GTATAC	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	80, 488
BtsIMutI	CAGTG	2 cut(s)	168, 252
Cac8I	GCNNGC	2 cut(s)	291, 298
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	343
CviJI	RGCY	9 cut(s)	80, 86, 125, 131, 243, 338, 408, 446, 488
CviKI_1	RGCY	9 cut(s)	80, 86, 125, 131, 243, 338, 408, 446, 488
DdeI	CTNAG	2 cut(s)	132, 442
DpnI	GATC	2 cut(s)	222, 350
DpnII	GATC	2 cut(s)	220, 348
DraIII	CACNNNGTG	1 cut(s)	165
EciI	GGCGGA	2 cut(s)	76, 418
Eco31I	GGTCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	111
Eco72I	CACGTG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	361
FaiI	YATR	7 cut(s)	83, 98, 308, 364, 388, 435, 450
FaqI	GGGAC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	6 cut(s)	72, 123, 196, 294, 339, 486
Fsp4HI	GCNGC	6 cut(s)	72, 123, 196, 294, 339, 486
FspBI	CTAG	1 cut(s)	490
GluI	GCNGC	6 cut(s)	72, 123, 196, 294, 339, 486
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	80, 488
HgaI	GACGC	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	388, 416
Hpy188I	TCNGA	2 cut(s)	335, 478
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	2 cut(s)	388, 416
HpyCH4III	ACNGT	2 cut(s)	163, 413
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	4 cut(s)	116, 122, 300, 428
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 122, 128, 144, 153, 377
HpyF3I	CTNAG	2 cut(s)	132, 442
HpySE526I	ACGT	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	220, 348
LmnI	GCTCC	3 cut(s)	335, 377, 405
LpnPI	CCDG	7 cut(s)	61, 88, 157, 162, 226, 240, 303
Lsp1109I	GCAGC	5 cut(s)	58, 134, 182, 280, 325
MaeI	CTAG	1 cut(s)	490
MaeII	ACGT	1 cut(s)	344
MalI	GATC	2 cut(s)	222, 350
MboI	GATC	2 cut(s)	220, 348
MboII	GAAGA	2 cut(s)	76, 143
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	2 cut(s)	201, 324
MnlI	CCTC	4 cut(s)	20, 251, 451, 481
MseI	TTAA	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	2 cut(s)	147, 300
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	354, 485
MwoI	GCNNNNNNNGC	6 cut(s)	77, 122, 128, 144, 153, 377
NdeII	GATC	2 cut(s)	220, 348
NlaIV	GGNNCC	2 cut(s)	350, 407
PctI	GAATGC	2 cut(s)	147, 300
PkrI	GCNGC	6 cut(s)	73, 124, 197, 295, 340, 487
PmaCI	CACGTG	1 cut(s)	345
PmlI	CACGTG	1 cut(s)	345
Ppu21I	YACGTR	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	74
PspCI	CACGTG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	350, 407
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	6 cut(s)	72, 123, 196, 294, 339, 486
Sau3AI	GATC	2 cut(s)	220, 348
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	76
Sse9I	AATT	2 cut(s)	201, 324
SsiI	CCGC	5 cut(s)	61, 168, 352, 403, 485
SspMI	CTAG	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	163, 413
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	43
TasI	AATT	2 cut(s)	201, 324
TauI	GCSGC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	2 cut(s)	168, 259
TseI	GCWGC	5 cut(s)	71, 122, 195, 293, 338
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	168, 259
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.