Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003733.1

Orthogroup ID

OG0005251

Physical Location & Seq

Genomic Coordinates Forward (+)

197381 .. 198706

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003733.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgggcaagtacggaggccttgtatccaatggcggtagggatgcggaattctcgataatttatatttggattgaggaggagcatgaagttgccatatccctggtatggctgttgatatctcccattcgtttcacgtttctctttttaggctctccgaaaatgcacattacccgaagcgtcatcacagtaaaactggtttgttacttatctacccctatcaaggagcatgacgtctgttatccgtctccgcagttttatcccttgtctgaaaaccaaagaagaagtcaaaagaagaagaagaagaagaagaagaacgaagaaggagaacaagttgattcagttcatgtgaaaagacagggagagggccatcatgaattggctaggaaattatgtgtcactgacctcattgccattggagttggagctacaataggtgctggagtgtatgtgcttgtgggaacggttgcaagagagcaggcagggcctgcgcttagcatttcattcttgattgctgggatagctgctgcactctctgccttctgctatgcagagcttgctggtcgctgtccctctgctggcagtgcttatcactattcctacatttgtctcggagaaggtgttgcttggtccgttggttgggctcttgctctagaatacactattggtgcttctgctgttgctcgtggcattaccccaaatctggccttgttttttggaggtctggataaattgcctgctgttttcgcccgtcacaccatccctgtgattggtgtcgtggttgatccatctgcagcagtattagttcttattgtcactttcctcttgtgtacaggaatcaaggagagttccttggtacaaatgattgttacatcagtaaatgtttctgtcttgctattcatcttgattgtcggtggatatttgggtttcaaaaatggatgggttggatatgaacttcccagcgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

321

Amino Acids

34.55

Weight (kDa)

8.58

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03720
malus_domestica	MD12G1010300.v1.1 MD12G1010400.v1.1 MD14G1007500.v1.1
prunus_persica	Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1
pyrus_communis	pycom12g00800
rosa_chinensis	RchiOBHm_Chr3g0496181
rosa_laevigata	RLG00000022554
rosa_multiflora	Rmu_sc0003733.1_g000063 Rmu_sc0006695.1_g000009
rosa_roxburghii	Rroxscaffold_6G00389490
rosa_rugosa	Rorug03G0280100.1 Rorug03G0280200 Rorug03G0280300 Rorug03G0280300
rosa_samantha	Rh3AG327100 Rh3BG363300 Rh3CG360000 Rh3DG363200
rosa_wichuraiana	Rw3G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AciI	CCGC	4 cut(s)	33, 44, 248, 960
AclWI	GGATC	1 cut(s)	776
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	11, 829, 855
AfiI	CCNNNNNNNGG	6 cut(s)	105, 220, 575, 636, 700, 767
AgsI	TTSAA	1 cut(s)	928
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	645, 677
AluBI	AGCT	3 cut(s)	425, 521, 553
AluI	AGCT	3 cut(s)	425, 521, 553
Alw26I	GTCTC	2 cut(s)	249, 611
AlwI	GGATC	1 cut(s)	776
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	4 cut(s)	16, 364, 482, 702
ApeKI	GCWGC	3 cut(s)	521, 524, 791
ApoI	RAATTY	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	364, 482, 627
AvaII	GGWCC	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	643
BauI	CACGAG	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	508, 511, 803
BccI	CCATC	4 cut(s)	375, 764, 793, 930
BciT130I	CCWGG	1 cut(s)	101
BciVI	GTATCC	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	249, 611
BfaI	CTAG	2 cut(s)	381, 650
BfmI	CTRYAG	1 cut(s)	789
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	3 cut(s)	522, 525, 792
BlpI	GCTNAGC	1 cut(s)	491
BlsI	GCNGC	3 cut(s)	523, 526, 793
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	627
BmgT120I	GGNCC	3 cut(s)	364, 482, 627
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	99, 849
BsaXI	ACNNNNNCTCC	8 cut(s)	6, 36, 315, 345, 432, 462, 603, 633
Bsc4I	CCNNNNNNNGG	6 cut(s)	105, 220, 575, 636, 700, 767
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	99, 849
BseGI	GGATG	3 cut(s)	46, 756, 941
BseLI	CCNNNNNNNGG	6 cut(s)	105, 220, 575, 636, 700, 767
BseMI	GCAATG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	89, 92
BseXI	GCAGC	3 cut(s)	508, 511, 803
BseYI	CCCAGC	2 cut(s)	512, 956
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	4 cut(s)	18, 366, 484, 704
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	6 cut(s)	105, 220, 575, 636, 700, 767
BsmAI	GTCTC	2 cut(s)	249, 611
BsmBI	CGTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	4 cut(s)	18, 366, 484, 704
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp1407I	TGTACA	1 cut(s)	827
Bsp143I	GATC	1 cut(s)	781
Bsp1720I	GCTNAGC	1 cut(s)	491
BspACI	CCGC	4 cut(s)	33, 44, 248, 960
BspANI	GGCC	4 cut(s)	18, 366, 484, 704
BspHI	TCATGA	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	793
BspPI	GGATC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	99, 849
BssMI	GATC	1 cut(s)	781
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	849
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	187, 463
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	3 cut(s)	485, 533, 554
BstAUI	TGTACA	1 cut(s)	827
BstC8I	GCNNGC	5 cut(s)	477, 486, 555, 577, 735
BstDEI	CTNAG	1 cut(s)	491
BstF5I	GGATG	3 cut(s)	46, 756, 941
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	2 cut(s)	249, 611
BstMBI	GATC	1 cut(s)	781
BstMWI	GCNNNNNNNGC	7 cut(s)	481, 485, 518, 533, 554, 581, 743
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	789
BstV1I	GCAGC	3 cut(s)	508, 511, 803
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	18, 366, 484, 704
BtsCI	GGATG	3 cut(s)	46, 756, 941
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	2 cut(s)	396, 586
Cac8I	GCNNGC	5 cut(s)	477, 486, 555, 577, 735
CaiI	CAGNNNCTG	1 cut(s)	485
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	3 cut(s)	364, 482, 627
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	10, 828, 854
CviAII	CATG	4 cut(s)	83, 227, 344, 371
CviQI	GTAC	3 cut(s)	10, 828, 854
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	849
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	849
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	4 cut(s)	86, 230, 347, 374
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	4 cut(s)	82, 226, 343, 370
FauI	CCCGC	1 cut(s)	953
Fnu4HI	GCNGC	3 cut(s)	522, 525, 792
FokI	GGATG	3 cut(s)	53, 743, 948
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	3 cut(s)	522, 525, 792
FspBI	CTAG	2 cut(s)	381, 650
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	522, 525, 792
GsaI	CCCAGC	2 cut(s)	516, 960
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	4 cut(s)	18, 366, 484, 704
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	86, 230, 347, 374
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	2 cut(s)	335, 834
Hpy166II	GTNNAC	1 cut(s)	828
Hpy188I	TCNGA	3 cut(s)	156, 268, 611
Hpy188III	TCNNGA	6 cut(s)	52, 371, 505, 650, 722, 901
Hpy8I	GTNNAC	1 cut(s)	828
HpyAV	CCTTC	3 cut(s)	314, 547, 608
HpyCH4III	ACNGT	2 cut(s)	187, 463
HpyCH4IV	ACGT	2 cut(s)	134, 231
HpyCH4V	TGCA	5 cut(s)	163, 467, 527, 548, 791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	481, 485, 518, 533, 554, 581, 743
HpyF3I	CTNAG	1 cut(s)	491
HpySE526I	ACGT	2 cut(s)	134, 231
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	86, 230, 347, 374
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	1 cut(s)	781
LmnI	GCTCC	3 cut(s)	79, 223, 422
Lsp1109I	GCAGC	3 cut(s)	508, 511, 803
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	381, 650
MaeII	ACGT	2 cut(s)	134, 231
MaeIII	GTNAC	5 cut(s)	200, 394, 749, 811, 865
MalI	GATC	1 cut(s)	783
MboI	GATC	1 cut(s)	781
MboII	GAAGA	9 cut(s)	291, 304, 307, 310, 313, 316, 319, 322, 329
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	5 cut(s)	47, 57, 374, 386, 728
MmeI	TCCRAC	2 cut(s)	400, 922
MnlI	CCTC	8 cut(s)	8, 67, 70, 355, 413, 580, 710, 830
MslI	CAYNNNNRTG	1 cut(s)	761
MspA1I	CMGCKG	1 cut(s)	960
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	7 cut(s)	481, 485, 518, 533, 554, 581, 743
NdeII	GATC	1 cut(s)	781
NlaIII	CATG	4 cut(s)	86, 230, 347, 374
NmuCI	GTSAC	3 cut(s)	394, 749, 811
PagI	TCATGA	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	335, 834
PkrI	GCNGC	3 cut(s)	523, 526, 793
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	2 cut(s)	512, 956
PspGI	CCWGG	1 cut(s)	99
PspPI	GGNCC	3 cut(s)	364, 482, 627
PstI	CTGCAG	1 cut(s)	793
PstNI	CAGNNNCTG	1 cut(s)	485
RsaI	GTAC	3 cut(s)	11, 829, 855
RsaNI	GTAC	3 cut(s)	10, 828, 854
RseI	CAYNNNNRTG	1 cut(s)	761
SatI	GCNGC	3 cut(s)	522, 525, 792
Sau3AI	GATC	1 cut(s)	781
Sau96I	GGNCC	3 cut(s)	364, 482, 627
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	643
SetI	ASST	9 cut(s)	137, 234, 405, 427, 436, 523, 555, 619, 721
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	789
SinI	GGWCC	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	761
Sse9I	AATT	5 cut(s)	47, 57, 374, 386, 728
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	4 cut(s)	33, 44, 248, 960
SspMI	CTAG	2 cut(s)	381, 650
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	187, 463
TaiI	ACGT	2 cut(s)	137, 234
TaqI	TCGA	1 cut(s)	53
TasI	AATT	5 cut(s)	47, 57, 374, 386, 728
TatI	WGTACW	1 cut(s)	827
TfiI	GAWTC	2 cut(s)	335, 834
TscAI	CASTG	2 cut(s)	403, 586
TseFI	GTSAC	3 cut(s)	394, 749, 811
TseI	GCWGC	3 cut(s)	521, 524, 791
Tsp45I	GTSAC	3 cut(s)	394, 749, 811
TspDTI	ATGAA	6 cut(s)	99, 332, 387, 489, 886, 963
TspGWI	ACGGA	3 cut(s)	27, 231, 619
TspRI	CASTG	2 cut(s)	403, 586
VpaK11BI	GGWCC	1 cut(s)	627
XapI	RAATTY	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	649
XspI	CTAG	2 cut(s)	381, 650
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.