Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005251

Physical Location & Seq

Genomic Coordinates Forward (+)

772516 .. 775185

Gene Structure 2670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1007500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGATGTTCCTCTTTTTGACTAATCATAATCACACAGAAAACCGAAATGAACAAAAAAGGCGGAAGATTGCTGCCTGGGCCATAGTCTTTCTCTTGTGCGGAGTGTCTGGCGTTCTCCTGCTGTGTTGTTTAATTGTGCTGACCTGTATTGATCAAGATGATACAAGGCACAGCTTTGGACACACCGGAGGTTTCAGCTGTCCATTTGTTCCATTTTTGCCTGCTGCTTGCATTCTCATAAATACCTACTTGCTGATTGATCTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

90

Amino Acids

9.98

Weight (kDa)

6.87

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_C	PF13906	65 - 88	1.5e-09	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03720
malus_domestica	MD12G1010300.v1.1 MD12G1010400.v1.1 MD14G1007500.v1.1
prunus_persica	Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1 Prupe.7G012400_v2.0.a1
pyrus_communis	pycom12g00800
rosa_chinensis	RchiOBHm_Chr3g0496181
rosa_laevigata	RLG00000022554
rosa_multiflora	Rmu_sc0003733.1_g000063 Rmu_sc0006695.1_g000009
rosa_roxburghii	Rroxscaffold_6G00389490
rosa_rugosa	Rorug03G0280100.1 Rorug03G0280200 Rorug03G0280300 Rorug03G0280300
rosa_samantha	Rh3AG327100 Rh3BG363300 Rh3CG360000 Rh3DG363200
rosa_wichuraiana	Rw3G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	61, 99
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	2 cut(s)	174, 198
AluI	AGCT	2 cut(s)	174, 198
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	71, 224
AspS9I	GGNCC	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	58, 211
BciT130I	CCWGG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	151
BisI	GCNGC	2 cut(s)	72, 225
BlsI	GCNGC	2 cut(s)	73, 226
Bme1390I	CCNGG	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	58, 211
BshFI	GGCC	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	151, 259
BspACI	CCGC	2 cut(s)	61, 99
BspANI	GGCC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	151, 259
Bst2UI	CCWGG	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	222, 229
BstKTI	GATC	2 cut(s)	154, 262
BstMBI	GATC	2 cut(s)	151, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	58, 211
BsuRI	GGCC	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	222, 229
Cfr13I	GGNCC	1 cut(s)	78
CviJI	RGCY	3 cut(s)	80, 174, 198
CviKI_1	RGCY	3 cut(s)	80, 174, 198
DpnI	GATC	2 cut(s)	153, 261
DpnII	GATC	2 cut(s)	151, 259
EciI	GGCGGA	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	74
FaiI	YATR	3 cut(s)	27, 83, 239
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	72, 225
Fsp4HI	GCNGC	2 cut(s)	72, 225
GluI	GCNGC	2 cut(s)	72, 225
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	186
HpaII	CCGG	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 259
LpnPI	CCDG	7 cut(s)	61, 88, 93, 131, 157, 199, 234
Lsp1109I	GCAGC	2 cut(s)	58, 211
MalI	GATC	2 cut(s)	153, 261
MboI	GATC	2 cut(s)	151, 259
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	1 cut(s)	132
MnlI	CCTC	2 cut(s)	20, 182
MseI	TTAA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	2 cut(s)	151, 259
PctI	GAATGC	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	73, 226
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	2 cut(s)	72, 225
Sau3AI	GATC	2 cut(s)	151, 259
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	5 cut(s)	146, 176, 193, 200, 248
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	2 cut(s)	61, 99
StyD4I	CCNGG	1 cut(s)	74
TasI	AATT	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	2 cut(s)	71, 224
TspDTI	ATGAA	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.