Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0018112

Physical Location & Seq

Genomic Coordinates Reverse (-)

23640883 .. 23641371

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1156000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACTGCTTCACATCATAACATTCCATCCCCACCAGCAGCGACGCTGATTAACGGCAGTAATAGTGGCGGGTTCATGCCGATGCGTCGCCACAGGATGATGATGCATATGTCATTCTTCTGGAGCCACAGCGCGGAGGTTCTCTTCACGGGTTGGCCAGGACCCGACCGCCCGGCCATATACGCCATTTCATTGGTGTTTGTCTTCCTTCTGGGCGTGCTGGTCGAGTGGCTCTCTCACAGCCGGCTAATCAAGACCGGAACTAATATAGTCACGGCGGGGCTTCTGCGGACGTGTCTTTACACGGTGCGTTCAGGGGTGTCGTATCTGGGGATGCTCGCCGTCATGTCGTTCAATGGGGGCGTTTTTCTTGCCACGGTTGGCGGGCACGCGGTTGGGTTCTTGGTGTTTGGGAGTGGGGTTTGGAAGAAGTCGGGCGGTTCGGGTACTGAGAGACCGTCAGATCTTCCTCCCATGAGGTGCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015089 GO:0015318 GO:0015677 GO:0015679 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0046658 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098705 GO:0098739 GO:0099402 GO:0099587

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

163

Amino Acids

17.43

Weight (kDa)

10.28

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	95 - 137	5.5e-11	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018112)

Species	Orthologous Gene IDs
malus_domestica	MD12G1156000.v1.1
prunus_persica	Prupe.6G265700_v2.0.a1 Prupe.6G266000_v2.0.a1
pyrus_communis	pycom12g14790
rosa_chinensis	RchiOBHm_Chr3g0464451
rosa_multiflora	Rmu_sc0003074.1_g000012
rosa_rugosa	Rorug03G0072300
rosa_samantha	Rh3BG134400 Rh3CG136800 Rh3DG135700
rosa_wichuraiana	Rw3G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	134, 392
AciI	CCGC	9 cut(s)	69, 134, 169, 278, 289, 384, 392, 438, 483
AcoI	YGGCCR	2 cut(s)	155, 174
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	355
AjiI	CACGTC	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	155, 174
ApeKI	GCWGC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	3 cut(s)	70, 291, 326
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	448
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	159, 173
Bme18I	GGWCC	1 cut(s)	161
BmgBI	CACGTC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	125, 163
BmrFI	CCNGG	2 cut(s)	159, 173
BmsI	GCATC	3 cut(s)	72, 93, 324
BpiI	GAAGAC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	26, 102, 339
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	441
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	50
Bsh1236I	CGCG	2 cut(s)	134, 392
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	157, 176
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	3 cut(s)	173, 244, 258
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	157, 176
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	463
BspACI	CCGC	9 cut(s)	69, 134, 169, 278, 289, 384, 392, 438, 483
BspANI	GGCC	2 cut(s)	157, 176
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	134, 392
BspLI	GGNNCC	2 cut(s)	125, 163
BspTNI	GGTCTC	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	307, 379, 459
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	5 cut(s)	218, 245, 339, 386, 390
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	26, 102, 339
BstFNI	CGCG	2 cut(s)	134, 392
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	463
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	157, 171
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	2 cut(s)	134, 392
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	157, 176
BtgI	CCRYGG	1 cut(s)	375
BtrI	CACGTC	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	26, 102, 339
Cac8I	GCNNGC	5 cut(s)	218, 245, 339, 386, 390
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	2 cut(s)	52, 74
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	3 cut(s)	76, 346, 475
CviJI	RGCY	7 cut(s)	126, 157, 176, 232, 243, 247, 283
CviKI_1	RGCY	7 cut(s)	126, 157, 176, 232, 243, 247, 283
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
EaeI	YGGCCR	2 cut(s)	155, 174
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	108
FaeI	CATG	3 cut(s)	79, 349, 478
FaiI	YATR	9 cut(s)	18, 77, 108, 110, 179, 181, 269, 347, 476
FatI	CATG	3 cut(s)	75, 345, 474
FauI	CCCGC	3 cut(s)	62, 271, 377
FauNDI	CATATG	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	3 cut(s)	13, 109, 346
Fsp4HI	GCNGC	1 cut(s)	39
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	157, 176
HapII	CCGG	3 cut(s)	173, 244, 258
HgaI	GACGC	2 cut(s)	52, 74
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	79, 349, 478
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HpaII	CCGG	3 cut(s)	173, 244, 258
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	2 cut(s)	121, 253
Hpy99I	CGWCG	2 cut(s)	46, 90
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	3 cut(s)	307, 379, 459
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	79, 349, 478
HspAI	GCGC	1 cut(s)	132
KroI	GCCGGC	1 cut(s)	243
KroNI	GCCGGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	3 cut(s)	72, 93, 324
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	5 cut(s)	109, 136, 196, 439, 458
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	157
MluNI	TGGCCA	1 cut(s)	157
MnlI	CCTC	3 cut(s)	130, 471, 480
Mox20I	TGGCCA	1 cut(s)	157
Mph1103I	ATGCAT	1 cut(s)	108
MroNI	GCCGGC	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	157
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	157
MspI	CCGG	3 cut(s)	173, 244, 258
MspR9I	CCNGG	2 cut(s)	159, 173
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	134, 392
MwoI	GCNNNNNNNGC	1 cut(s)	182
NaeI	GCCGGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	173
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	1 cut(s)	463
NgoMIV	GCCGGC	1 cut(s)	243
NlaIII	CATG	3 cut(s)	79, 349, 478
NlaIV	GGNNCC	2 cut(s)	125, 163
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	108
PdiI	GCCGGC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	125, 163
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	159, 173
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	3 cut(s)	141, 296, 482
SfaNI	GCATC	3 cut(s)	72, 93, 324
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	80
SsiI	CCGC	9 cut(s)	69, 134, 169, 278, 289, 384, 392, 438, 483
StyD4I	CCNGG	2 cut(s)	157, 171
TaaI	ACNGT	3 cut(s)	307, 379, 459
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	64, 180
VpaK11BI	GGWCC	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.