Rmu_sc0003074.1_g000012

Ctr copper transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003074.1
OG0018112
Physical Location & Seq
Reverse (-)
46372 .. 46833
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003074.1_g000012.1.cds

Sequence Viewer

Length: 462 bp
atggctgcttcgcatgacagcatgcatgctccgccaacgccgtcgtttaaccgcactagtcaccgtaggacgatgatgcccatgaccttcttctggggcggcagcaccgaggttctcttctccggttgtcccggccgggatgatcctgtgatgtacgtcatgtcattggcatttgtatttgttctggccgtgcttgctgagtggctctcccactgcagttttatcaagtctagcgcgaacaacttcgaggtggggatgtggcggacttgtttgtataccgtgcggtctgggatgtcgtatttggtaatgctcgccgtcatgtcgttcaatggcggtgtttttcttgcggcggttggggggcactggctggggttcttggctttttggagcagcgcttttctgaagtctggcgggtcaggtgatgagaaacggttggatcttcctcccagttcttgcggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

153

Amino Acids

16.74

Weight (kDa)

7.74

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018112)

Species Orthologous Gene IDs
malus_domestica MD12G1156000.v1.1
prunus_persica Prupe.6G265700_v2.0.a1 Prupe.6G266000_v2.0.a1
pyrus_communis pycom12g14790
rosa_chinensis RchiOBHm_Chr3g0464451
rosa_multiflora Rmu_sc0003074.1_g000012
rosa_rugosa Rorug03G0072300
rosa_samantha Rh3BG134400 Rh3CG136800 Rh3DG135700
rosa_wichuraiana Rw3G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 275
AccII CGCG 1 cut(s) 236
AclWI GGATC 2 cut(s) 137, 444
AcoI YGGCCR 2 cut(s) 133, 186
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 1 cut(s) 155
AfeI AGCGCT 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 328
AhlI ACTAGT 1 cut(s) 56
AlwI GGATC 2 cut(s) 137, 444
Aor51HI AGCGCT 1 cut(s) 394
AoxI GGCC 2 cut(s) 133, 186
ApeKI GCWGC 3 cut(s) 5, 102, 390
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 2 cut(s) 236, 395
AsuC2I CCSGG 2 cut(s) 132, 137
AsuHPI GGTGA 2 cut(s) 53, 431
BaeGI GKGCMC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 114, 402
BceAI ACGGC 3 cut(s) 25, 173, 299
BcnI CCSGG 2 cut(s) 132, 137
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 2 cut(s) 57, 231
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 396
BisI GCNGC 5 cut(s) 6, 100, 103, 348, 391
BlsI GCNGC 5 cut(s) 7, 101, 104, 349, 392
Bme1390I CCNGG 2 cut(s) 132, 137
BmrFI CCNGG 2 cut(s) 132, 137
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpuMI CCSGG 2 cut(s) 132, 137
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 2 cut(s) 368, 447
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 145, 261, 297
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 2 cut(s) 368, 447
BseSI GKGCMC 1 cut(s) 363
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 114, 402
BseYI CCCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 135, 188
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 3 cut(s) 123, 132, 136
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 135, 188
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 142, 436
BspANI GGCC 2 cut(s) 135, 188
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 236
BspMAI CTGCAG 1 cut(s) 218
BspPI GGATC 2 cut(s) 137, 444
BsrI ACTGG 2 cut(s) 368, 447
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 142, 436
BssNAI GTATAC 1 cut(s) 276
Bst1107I GTATAC 1 cut(s) 276
Bst4CI ACNGT 3 cut(s) 65, 280, 432
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 4 cut(s) 23, 27, 195, 312
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 145, 261, 297
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 2 cut(s) 236, 395
BstKTI GATC 2 cut(s) 145, 439
BstMBI GATC 2 cut(s) 142, 436
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 31, 194
BstNSI RCATGY 2 cut(s) 25, 29
BstSCI CCNGG 2 cut(s) 130, 135
BstSFI CTRYAG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 114, 402
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BstZ17I GTATAC 1 cut(s) 276
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 2 cut(s) 135, 188
BtsCI GGATG 3 cut(s) 145, 261, 297
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 211, 361
Cac8I GCNNGC 4 cut(s) 23, 27, 195, 312
CfoI GCGC 2 cut(s) 236, 395
Csp6I GTAC 1 cut(s) 154
CviAII CATG 6 cut(s) 14, 22, 26, 82, 160, 319
CviJI RGCY 6 cut(s) 5, 135, 188, 205, 367, 380
CviKI_1 RGCY 6 cut(s) 5, 135, 188, 205, 367, 380
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 144, 438
DpnII GATC 2 cut(s) 142, 436
EaeI YGGCCR 2 cut(s) 133, 186
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 2 cut(s) 21, 277
EclXI CGGCCG 1 cut(s) 133
Eco47III AGCGCT 1 cut(s) 394
Eco52I CGGCCG 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 422
EcoT22I ATGCAT 1 cut(s) 27
FaeI CATG 6 cut(s) 17, 25, 29, 85, 163, 322
FaiI YATR 7 cut(s) 15, 23, 27, 83, 161, 276, 320
FaqI GGGAC 1 cut(s) 114
FatI CATG 6 cut(s) 13, 21, 25, 81, 159, 318
FauI CCCGC 1 cut(s) 404
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 5 cut(s) 6, 100, 103, 348, 391
FokI GGATG 3 cut(s) 152, 268, 304
Fsp4HI GCNGC 5 cut(s) 6, 100, 103, 348, 391
FspBI CTAG 2 cut(s) 57, 231
GlaI GCGC 2 cut(s) 235, 394
GluI GCNGC 5 cut(s) 6, 100, 103, 348, 391
GsaI CCCAGC 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 396
HaeIII GGCC 2 cut(s) 135, 188
HapII CCGG 3 cut(s) 123, 132, 136
HhaI GCGC 2 cut(s) 236, 395
Hin1II CATG 6 cut(s) 17, 25, 29, 85, 163, 322
Hin6I GCGC 2 cut(s) 234, 393
HinP1I GCGC 2 cut(s) 234, 393
HpaII CCGG 3 cut(s) 123, 132, 136
HphI GGTGA 2 cut(s) 53, 431
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 402
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 3 cut(s) 65, 280, 432
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 25, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 194
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 6 cut(s) 17, 25, 29, 85, 163, 322
HspAI GCGC 2 cut(s) 234, 393
Kzo9I GATC 2 cut(s) 142, 436
LmnI GCTCC 2 cut(s) 34, 387
Lsp1109I GCAGC 2 cut(s) 114, 402
LweI GCATC 1 cut(s) 66
MaeI CTAG 2 cut(s) 57, 231
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 144, 438
MboI GATC 2 cut(s) 142, 436
MboII GAAGA 3 cut(s) 82, 109, 431
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 3 cut(s) 103, 241, 453
Mph1103I ATGCAT 1 cut(s) 27
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 1 cut(s) 48
MspI CCGG 3 cut(s) 123, 132, 136
MspR9I CCNGG 2 cut(s) 132, 137
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 31, 194
NciI CCSGG 2 cut(s) 132, 137
NdeII GATC 2 cut(s) 142, 436
NlaIII CATG 6 cut(s) 17, 25, 29, 85, 163, 322
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 2 cut(s) 25, 29
PaeI GCATGC 2 cut(s) 25, 29
PdmI GAANNNNTTC 1 cut(s) 242
PkrI GCNGC 5 cut(s) 7, 101, 104, 349, 392
PspFI CCCAGC 1 cut(s) 367
PstI CTGCAG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 5 cut(s) 6, 100, 103, 348, 391
Sau3AI GATC 2 cut(s) 142, 436
ScrFI CCNGG 2 cut(s) 132, 137
SduI GDGCHC 1 cut(s) 363
SetI ASST 5 cut(s) 89, 114, 159, 252, 421
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 214
SpeI ACTAGT 1 cut(s) 56
SphI GCATGC 2 cut(s) 25, 29
SspMI CTAG 2 cut(s) 57, 231
StyD4I CCNGG 2 cut(s) 130, 135
TaaI ACNGT 3 cut(s) 65, 280, 432
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 246
TauI GCSGC 2 cut(s) 102, 350
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 218, 368
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 3 cut(s) 5, 102, 390
Tsp45I GTSAC 1 cut(s) 59
TspRI CASTG 2 cut(s) 218, 368
XceI RCATGY 2 cut(s) 25, 29
XmiI GTMKAC 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 2 cut(s) 57, 231
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.