Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0018112

Physical Location & Seq

Genomic Coordinates Reverse (-)

25417738 .. 25418217

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G265700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTGCTTCACATCACAACATCCTATCTCCGCCGCCTCCGGCGTTTAATGGAAGTACTGGTTTCATGCCCACGCGCCGCCGCAAGATGATGATGCACATGACCTTCTTCTGGGGCCACAGCGCCGAAGTTCTCTTCTCGGGTTGGCCCGGCCGCGACAACCCGGTCATGTACGCCCTCTCGCTGCTCTGCGTCTTCGTTCTCGCCGTCCTCGTCGAGCTGCTCTCCCACTGCAGTGTCTTCAAGCCAGGCGCGAACGGCCTCGCGGTGGGGTTTCTGCAGACTGGTCTCTACACGCTGCGCTCCGGGCTGTCGTATTTGGTGATGCTCGCCGTCATGTCGTTTAACGGCGGAGTTTTCCTCGCCGTGGTGGCGGGGCATGCGGTCGGGTTTTTGCTTTTCGGGAGCCGGGCTTTTAAGAAGTCGGACGGGTCGGGTATTGATAGACAGGCGAGTCTTCCTCCCATGACGTGCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008324 GO:0008643 GO:0015075 GO:0015144 GO:0015318 GO:0016020 GO:0016021 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0034220 GO:0035434 GO:0043621 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0046915 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

160

Amino Acids

17.06

Weight (kDa)

9.73

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018112)

Species	Orthologous Gene IDs
malus_domestica	MD12G1156000.v1.1
prunus_persica	Prupe.6G265700_v2.0.a1 Prupe.6G266000_v2.0.a1
pyrus_communis	pycom12g14790
rosa_chinensis	RchiOBHm_Chr3g0464451
rosa_multiflora	Rmu_sc0003074.1_g000012
rosa_rugosa	Rorug03G0072300
rosa_samantha	Rh3BG134400 Rh3CG136800 Rh3DG135700
rosa_wichuraiana	Rw3G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	164, 453
AccII	CGCG	4 cut(s)	76, 156, 254, 266
AcoI	YGGCCR	1 cut(s)	151
AfaI	GTAC	2 cut(s)	58, 173
AfiI	CCNNNNNNNGG	3 cut(s)	111, 268, 367
AgsI	TTSAA	1 cut(s)	244
AjiI	CACGTC	1 cut(s)	471
AjnI	CCWGG	1 cut(s)	247
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	4 cut(s)	115, 146, 151, 259
ApeKI	GCWGC	4 cut(s)	5, 184, 220, 298
AspLEI	GCGC	4 cut(s)	78, 125, 254, 303
AspS9I	GGNCC	2 cut(s)	115, 147
AsuC2I	CCSGG	4 cut(s)	150, 164, 307, 410
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	139
BbsI	GAAGAC	3 cut(s)	187, 232, 449
BbvI	GCAGC	3 cut(s)	171, 207, 285
BceAI	ACGGC	5 cut(s)	191, 274, 317, 350, 364
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	4 cut(s)	150, 164, 307, 410
BcoDI	GTCTC	1 cut(s)	293
BfmI	CTRYAG	2 cut(s)	232, 278
BfoI	RGCGCY	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	371
BisI	GCNGC	8 cut(s)	6, 35, 79, 82, 154, 185, 221, 299
BlsI	GCNGC	8 cut(s)	7, 36, 80, 83, 155, 186, 222, 300
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	5 cut(s)	150, 164, 249, 307, 410
BmeT110I	CYCGRG	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	471
BmgT120I	GGNCC	2 cut(s)	115, 147
BmiI	GGNNCC	2 cut(s)	116, 407
BmrFI	CCNGG	5 cut(s)	150, 164, 249, 307, 410
BmsI	GCATC	2 cut(s)	84, 315
BpiI	GAAGAC	3 cut(s)	187, 232, 449
BplI	GAGNNNNNCTC	6 cut(s)	209, 241, 345, 377, 445, 477
BpuMI	CCSGG	4 cut(s)	150, 164, 307, 410
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 268, 367
Bse1I	ACTGG	2 cut(s)	64, 289
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	3 cut(s)	111, 268, 367
BseNI	ACTGG	2 cut(s)	64, 289
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	171, 207, 285
Bsh1236I	CGCG	4 cut(s)	76, 156, 254, 266
Bsh1285I	CGRYCG	2 cut(s)	154, 387
BshFI	GGCC	4 cut(s)	117, 148, 153, 261
BsiEI	CGRYCG	2 cut(s)	154, 387
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	5 cut(s)	41, 150, 164, 306, 409
BslI	CCNNNNNNNGG	3 cut(s)	111, 268, 367
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	4 cut(s)	117, 148, 153, 261
Bso31I	GGTCTC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	139
BspANI	GGCC	4 cut(s)	117, 148, 153, 261
BspFNI	CGCG	4 cut(s)	76, 156, 254, 266
BspLI	GGNNCC	2 cut(s)	116, 407
BspMAI	CTGCAG	2 cut(s)	236, 282
BspTNI	GGTCTC	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	64, 289
BssECI	CCNNGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	330, 381
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	4 cut(s)	76, 156, 254, 266
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	4 cut(s)	78, 125, 254, 303
BstMAI	GTCTC	1 cut(s)	293
BstMCI	CGRYCG	2 cut(s)	154, 387
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 307, 371, 380
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	5 cut(s)	148, 162, 247, 305, 408
BstSFI	CTRYAG	2 cut(s)	232, 278
BstUI	CGCG	4 cut(s)	76, 156, 254, 266
BstV1I	GCAGC	3 cut(s)	171, 207, 285
BstV2I	GAAGAC	3 cut(s)	187, 232, 449
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	117, 148, 153, 261
BtgI	CCRYGG	1 cut(s)	366
BtrI	CACGTC	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	2 cut(s)	229, 241
BtsIMutI	CAGTG	2 cut(s)	229, 241
Cac8I	GCNNGC	2 cut(s)	330, 381
CfoI	GCGC	4 cut(s)	78, 125, 254, 303
Cfr13I	GGNCC	2 cut(s)	115, 147
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	57, 172
CviAII	CATG	6 cut(s)	67, 100, 169, 337, 380, 466
CviQI	GTAC	2 cut(s)	57, 172
DrdI	GACNNNNNNGTC	2 cut(s)	164, 453
DseDI	GACNNNNNNGTC	2 cut(s)	164, 453
EaeI	YGGCCR	1 cut(s)	151
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	2 cut(s)	21, 366
EclXI	CGGCCG	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	293
Eco52I	CGGCCG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	6 cut(s)	70, 103, 172, 340, 383, 469
FaiI	YATR	6 cut(s)	68, 101, 170, 338, 381, 467
FatI	CATG	6 cut(s)	66, 99, 168, 336, 379, 465
FauI	CCCGC	1 cut(s)	367
Fnu4HI	GCNGC	8 cut(s)	6, 35, 79, 82, 154, 185, 221, 299
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	8 cut(s)	6, 35, 79, 82, 154, 185, 221, 299
GlaI	GCGC	4 cut(s)	77, 124, 253, 302
GluI	GCNGC	8 cut(s)	6, 35, 79, 82, 154, 185, 221, 299
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	117, 148, 153, 261
HapII	CCGG	5 cut(s)	41, 150, 164, 306, 409
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	4 cut(s)	78, 125, 254, 303
Hin1II	CATG	6 cut(s)	70, 103, 172, 340, 383, 469
Hin6I	GCGC	4 cut(s)	76, 123, 252, 301
HinP1I	GCGC	4 cut(s)	76, 123, 252, 301
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	5 cut(s)	41, 150, 164, 306, 409
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	3 cut(s)	97, 234, 280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 307, 371, 380
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	6 cut(s)	70, 103, 172, 340, 383, 469
HspAI	GCGC	4 cut(s)	76, 123, 252, 301
LmnI	GCTCC	2 cut(s)	308, 405
Lsp1109I	GCAGC	3 cut(s)	171, 207, 285
LweI	GCATC	2 cut(s)	84, 315
MaeII	ACGT	1 cut(s)	470
MboII	GAAGA	5 cut(s)	100, 127, 187, 232, 449
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	6 cut(s)	48, 188, 221, 272, 371, 471
MseI	TTAA	3 cut(s)	48, 345, 417
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	5 cut(s)	41, 150, 164, 306, 409
MspR9I	CCNGG	5 cut(s)	150, 164, 249, 307, 410
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	4 cut(s)	76, 156, 254, 266
MwoI	GCNNNNNNNGC	4 cut(s)	258, 307, 371, 380
NciI	CCSGG	4 cut(s)	150, 164, 307, 410
NlaIII	CATG	6 cut(s)	70, 103, 172, 340, 383, 469
NlaIV	GGNNCC	2 cut(s)	116, 407
NspI	RCATGY	1 cut(s)	383
OliI	CACNNNNGTG	1 cut(s)	234
PaeI	GCATGC	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 210
PkrI	GCNGC	8 cut(s)	7, 36, 80, 83, 155, 186, 222, 300
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	116, 407
PspPI	GGNCC	2 cut(s)	115, 147
PstI	CTGCAG	2 cut(s)	236, 282
RsaI	GTAC	2 cut(s)	58, 173
RsaNI	GTAC	2 cut(s)	57, 172
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	48, 345, 417
SatI	GCNGC	8 cut(s)	6, 35, 79, 82, 154, 185, 221, 299
Sau96I	GGNCC	2 cut(s)	115, 147
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	5 cut(s)	150, 164, 249, 307, 410
SetI	ASST	3 cut(s)	107, 222, 473
SfaNI	GCATC	2 cut(s)	84, 315
SfcI	CTRYAG	2 cut(s)	232, 278
SmiMI	CAYNNNNRTG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	383
StyD4I	CCNGG	5 cut(s)	148, 162, 247, 305, 408
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	216
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	4 cut(s)	37, 81, 84, 156
Tru1I	TTAA	3 cut(s)	48, 345, 417
Tru9I	TTAA	3 cut(s)	48, 345, 417
TscAI	CASTG	2 cut(s)	236, 241
TseI	GCWGC	4 cut(s)	5, 184, 220, 298
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	236, 241
XceI	RCATGY	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.