Prupe.6G266000_v2.0.a1

Ctr copper transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018112
Physical Location & Seq
Reverse (-)
25432434 .. 25433284
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G266000.1

Sequence Viewer

Length: 480 bp
ATGGCTGCTTCACATCACAACATCCCATCTCCGCCGCCTCCGGCGTTTAATGGCAGTACTGGGTTCATGCCCACGCGCCGCCGCAAGATGATGATGCACATGACCTTCTTCTGGGGCCACAGCGCCGAGGTTCTCTTCTCGGGTTGGCCCGGCCGAGACAACCCGGTCATGTACGCCCTCTCGCTGCTCTGCGTCTTCTTTCTCGCCGTCCTCGTCGAGCTGCTCTCCCACTGCAGCTTCTTCAAGCCCGGCGCGAACGGCGTCGCGGTGGGGTTTCTGCAGACTGGTCTCTACACACTGCGCTCCGGGCTGTCGTATTTGGTGATGCTTGCCGTCATGTCGTTTAACGGCGGCGTTTTCCTCGCCGTGGTGGGAGGACATGCGGTCGGGTTTTTGCTTTTCAGGAGCCGGGCTTTTAAGAAGTCGGACGGGTCGGGTATTGATAGACAGGCGAGTCTTCCTCCCATGACGTGCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

160

Amino Acids

17.21

Weight (kDa)

9.94

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018112)

Species Orthologous Gene IDs
malus_domestica MD12G1156000.v1.1
prunus_persica Prupe.6G265700_v2.0.a1 Prupe.6G266000_v2.0.a1
pyrus_communis pycom12g14790
rosa_chinensis RchiOBHm_Chr3g0464451
rosa_multiflora Rmu_sc0003074.1_g000012
rosa_rugosa Rorug03G0072300
rosa_samantha Rh3BG134400 Rh3CG136800 Rh3DG135700
rosa_wichuraiana Rw3G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 164, 453
AccII CGCG 3 cut(s) 76, 254, 266
AciI CCGC 8 cut(s) 32, 35, 79, 82, 266, 351, 383, 474
AcoI YGGCCR 1 cut(s) 151
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 58, 173
AfiI CCNNNNNNNGG 2 cut(s) 111, 367
AgsI TTSAA 1 cut(s) 244
AhdI GACNNNNNGTC 1 cut(s) 383
AjiI CACGTC 1 cut(s) 471
AluBI AGCT 2 cut(s) 220, 237
AluI AGCT 2 cut(s) 220, 237
Alw26I GTCTC 2 cut(s) 150, 293
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 3 cut(s) 115, 146, 151
ApeKI GCWGC 4 cut(s) 5, 184, 220, 234
AspLEI GCGC 4 cut(s) 78, 125, 254, 303
AspS9I GGNCC 2 cut(s) 115, 147
AsuC2I CCSGG 5 cut(s) 150, 164, 249, 307, 410
AsuHPI GGTGA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 139
BbsI GAAGAC 2 cut(s) 187, 449
BbvI GCAGC 3 cut(s) 171, 207, 246
BccI CCATC 1 cut(s) 34
BceAI ACGGC 5 cut(s) 191, 274, 317, 350, 364
BcnI CCSGG 5 cut(s) 150, 164, 249, 307, 410
BcoDI GTCTC 2 cut(s) 150, 293
BfmI CTRYAG 2 cut(s) 232, 278
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 8 cut(s) 6, 35, 79, 82, 185, 221, 235, 352
BlsI GCNGC 8 cut(s) 7, 36, 80, 83, 186, 222, 236, 353
BmcAI AGTACT 1 cut(s) 58
Bme1390I CCNGG 5 cut(s) 150, 164, 249, 307, 410
BmeRI GACNNNNNGTC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 139
BmgBI CACGTC 1 cut(s) 471
BmgT120I GGNCC 2 cut(s) 115, 147
BmiI GGNNCC 2 cut(s) 116, 407
BmrFI CCNGG 5 cut(s) 150, 164, 249, 307, 410
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 84, 315
BmuI ACTGGG 1 cut(s) 69
BpiI GAAGAC 2 cut(s) 187, 449
BplI GAGNNNNNCTC 4 cut(s) 209, 241, 445, 477
BpuMI CCSGG 5 cut(s) 150, 164, 249, 307, 410
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 126, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 367
Bse1I ACTGG 2 cut(s) 64, 289
BseDI CCNNGG 2 cut(s) 126, 366
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 111, 367
BseNI ACTGG 2 cut(s) 64, 289
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 171, 207, 246
Bsh1236I CGCG 3 cut(s) 76, 254, 266
Bsh1285I CGRYCG 2 cut(s) 154, 387
BshFI GGCC 3 cut(s) 117, 148, 153
BsiEI CGRYCG 2 cut(s) 154, 387
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 6 cut(s) 41, 150, 164, 249, 306, 409
BslI CCNNNNNNNGG 2 cut(s) 111, 367
BsmAI GTCTC 2 cut(s) 150, 293
BsnI GGCC 3 cut(s) 117, 148, 153
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 139
BspACI CCGC 8 cut(s) 32, 35, 79, 82, 266, 351, 383, 474
BspANI GGCC 3 cut(s) 117, 148, 153
BspFNI CGCG 3 cut(s) 76, 254, 266
BspLI GGNNCC 2 cut(s) 116, 407
BspMAI CTGCAG 2 cut(s) 236, 282
BspTNI GGTCTC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 64, 289
BssECI CCNNGG 2 cut(s) 126, 366
BssNI GRCGYC 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 21
BstFNI CGCG 3 cut(s) 76, 254, 266
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 4 cut(s) 78, 125, 254, 303
BstMAI GTCTC 2 cut(s) 150, 293
BstMCI CGRYCG 2 cut(s) 154, 387
BstMWI GCNNNNNNNGC 2 cut(s) 258, 307
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 5 cut(s) 148, 162, 247, 305, 408
BstSFI CTRYAG 2 cut(s) 232, 278
BstUI CGCG 3 cut(s) 76, 254, 266
BstV1I GCAGC 3 cut(s) 171, 207, 246
BstV2I GAAGAC 2 cut(s) 187, 449
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 3 cut(s) 117, 148, 153
BtgI CCRYGG 1 cut(s) 366
BtrI CACGTC 1 cut(s) 471
BtsCI GGATG 1 cut(s) 21
BtsI GCAGTG 2 cut(s) 229, 296
BtsIMutI CAGTG 2 cut(s) 229, 296
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 4 cut(s) 78, 125, 254, 303
Cfr13I GGNCC 2 cut(s) 115, 147
CseI GACGC 2 cut(s) 181, 250
Csp6I GTAC 2 cut(s) 57, 172
CviAII CATG 6 cut(s) 67, 100, 169, 337, 380, 466
CviQI GTAC 2 cut(s) 57, 172
DrdI GACNNNNNNGTC 2 cut(s) 164, 453
DriI GACNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 2 cut(s) 164, 453
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 140
Eam1105I GACNNNNNGTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 21
EclXI CGGCCG 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 139
FaeI CATG 6 cut(s) 70, 103, 172, 340, 383, 469
FaiI YATR 6 cut(s) 68, 101, 170, 338, 381, 467
FatI CATG 6 cut(s) 66, 99, 168, 336, 379, 465
Fnu4HI GCNGC 8 cut(s) 6, 35, 79, 82, 185, 221, 235, 352
FokI GGATG 1 cut(s) 8
Fsp4HI GCNGC 8 cut(s) 6, 35, 79, 82, 185, 221, 235, 352
GlaI GCGC 4 cut(s) 77, 124, 253, 302
GluI GCNGC 8 cut(s) 6, 35, 79, 82, 185, 221, 235, 352
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 3 cut(s) 117, 148, 153
HapII CCGG 6 cut(s) 41, 150, 164, 249, 306, 409
HgaI GACGC 2 cut(s) 181, 250
HhaI GCGC 4 cut(s) 78, 125, 254, 303
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 6 cut(s) 70, 103, 172, 340, 383, 469
Hin6I GCGC 4 cut(s) 76, 123, 252, 301
HinP1I GCGC 4 cut(s) 76, 123, 252, 301
HinfI GANTC 1 cut(s) 454
HpaII CCGG 6 cut(s) 41, 150, 164, 249, 306, 409
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 1 cut(s) 403
Hpy99I CGWCG 2 cut(s) 218, 266
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 3 cut(s) 97, 234, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 307
HpySE526I ACGT 1 cut(s) 470
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 6 cut(s) 70, 103, 172, 340, 383, 469
HspAI GCGC 4 cut(s) 76, 123, 252, 301
LmnI GCTCC 2 cut(s) 308, 405
Lsp1109I GCAGC 3 cut(s) 171, 207, 246
LweI GCATC 2 cut(s) 84, 315
MaeII ACGT 1 cut(s) 470
MboII GAAGA 5 cut(s) 100, 127, 187, 232, 449
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 7 cut(s) 48, 121, 188, 221, 368, 371, 471
MseI TTAA 3 cut(s) 48, 345, 417
MspI CCGG 6 cut(s) 41, 150, 164, 249, 306, 409
MspR9I CCNGG 5 cut(s) 150, 164, 249, 307, 410
MvnI CGCG 3 cut(s) 76, 254, 266
MwoI GCNNNNNNNGC 2 cut(s) 258, 307
NciI CCSGG 5 cut(s) 150, 164, 249, 307, 410
NlaIII CATG 6 cut(s) 70, 103, 172, 340, 383, 469
NlaIV GGNNCC 2 cut(s) 116, 407
NmeAIII GCCGAG 2 cut(s) 151, 179
NspI RCATGY 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PkrI GCNGC 8 cut(s) 7, 36, 80, 83, 186, 222, 236, 353
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 116, 407
PspPI GGNCC 2 cut(s) 115, 147
PstI CTGCAG 2 cut(s) 236, 282
RsaI GTAC 2 cut(s) 58, 173
RsaNI GTAC 2 cut(s) 57, 172
SaqAI TTAA 3 cut(s) 48, 345, 417
SatI GCNGC 8 cut(s) 6, 35, 79, 82, 185, 221, 235, 352
Sau96I GGNCC 2 cut(s) 115, 147
ScaI AGTACT 1 cut(s) 58
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 5 cut(s) 150, 164, 249, 307, 410
SetI ASST 5 cut(s) 107, 132, 222, 239, 473
SfaNI GCATC 2 cut(s) 84, 315
SfcI CTRYAG 2 cut(s) 232, 278
SsiI CCGC 8 cut(s) 32, 35, 79, 82, 266, 351, 383, 474
StyD4I CCNGG 5 cut(s) 148, 162, 247, 305, 408
TaiI ACGT 1 cut(s) 473
TaqI TCGA 1 cut(s) 216
TatI WGTACW 1 cut(s) 56
TauI GCSGC 4 cut(s) 37, 81, 84, 354
Tru1I TTAA 3 cut(s) 48, 345, 417
Tru9I TTAA 3 cut(s) 48, 345, 417
TscAI CASTG 2 cut(s) 236, 303
TseI GCWGC 4 cut(s) 5, 184, 220, 234
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 2 cut(s) 236, 303
XceI RCATGY 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.