Rw3G010990

copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0018112
Physical Location & Seq
Forward (+)
10636472 .. 10636933
462 bp
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UTR
Exon/CDS
Intron
Rw3G010990.1

Sequence Viewer

Length: 462 bp
ATGGCTGCTTCGCATGACAGCATGCATGCTCCGCCAACGCCGTCGTTTAACCGCACTAGTCACCGTAGGACGATGATGCCCATGACCTTCTTCTGGGGCGGCAGCACCGAGGTTCTCTTCTCCGGTTGTCCCGGCCGGGATGATCCTGTGATGTACGTCATGTCATTGGCATTTGTATTTGTTCTGGCCGTGCTTGCTGAGTGGCTCTCCCACTGCAGCTTTATCAAGTCTAGCGCGAATAACTTCGGGGTGGGGATGTGGCGGACTTGTTTGTATACCGTGCGGTCTGGGATGTCGTATTTGGTAATGCTCGCCGTCATGTCGTTCAATGGCGGTGTTTTTCTTGCGGCGGTTGGGGGGCACGCGCTGGGGTTCTTGGCTTTTGGGAGCAGCGCTTTTCGGAAGTCTGGCGGGTCAGGTGATGAGAAACGGTTGGATCTTCCTCCCAGTTCTTGCGGATAA

Protein Analysis

153

Amino Acids

16.47

Weight (kDa)

8.84

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 83 - 128 2.6e-11 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018112)

Species Orthologous Gene IDs
malus_domestica MD12G1156000.v1.1
prunus_persica Prupe.6G265700_v2.0.a1 Prupe.6G266000_v2.0.a1
pyrus_communis pycom12g14790
rosa_chinensis RchiOBHm_Chr3g0464451
rosa_multiflora Rmu_sc0003074.1_g000012
rosa_rugosa Rorug03G0072300
rosa_samantha Rh3BG134400 Rh3CG136800 Rh3DG135700
rosa_wichuraiana Rw3G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 275
AccII CGCG 2 cut(s) 236, 365
AclWI GGATC 2 cut(s) 137, 444
AcoI YGGCCR 2 cut(s) 133, 186
AfaI GTAC 1 cut(s) 155
AfeI AGCGCT 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 328
AhlI ACTAGT 1 cut(s) 56
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
AlwI GGATC 2 cut(s) 137, 444
Aor51HI AGCGCT 1 cut(s) 394
AoxI GGCC 2 cut(s) 133, 186
ApeKI GCWGC 4 cut(s) 5, 102, 216, 390
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 3 cut(s) 236, 367, 395
AsuC2I CCSGG 2 cut(s) 132, 137
AsuHPI GGTGA 2 cut(s) 53, 431
BaeGI GKGCMC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 114, 228, 402
BceAI ACGGC 3 cut(s) 25, 173, 299
BcnI CCSGG 2 cut(s) 132, 137
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 2 cut(s) 57, 231
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 396
BisI GCNGC 6 cut(s) 6, 100, 103, 217, 348, 391
BlsI GCNGC 6 cut(s) 7, 101, 104, 218, 349, 392
Bme1390I CCNGG 2 cut(s) 132, 137
BmrFI CCNGG 2 cut(s) 132, 137
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpuMI CCSGG 2 cut(s) 132, 137
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 145, 261, 297
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 363
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 3 cut(s) 114, 228, 402
BseYI CCCAGC 1 cut(s) 367
Bsh1236I CGCG 2 cut(s) 236, 365
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 135, 188
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 3 cut(s) 123, 132, 136
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 135, 188
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 142, 436
BspANI GGCC 2 cut(s) 135, 188
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 2 cut(s) 236, 365
BspMAI CTGCAG 1 cut(s) 218
BspPI GGATC 2 cut(s) 137, 444
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 142, 436
BssNAI GTATAC 1 cut(s) 276
Bst1107I GTATAC 1 cut(s) 276
Bst4CI ACNGT 3 cut(s) 65, 280, 432
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 5 cut(s) 23, 27, 195, 312, 363
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 145, 261, 297
BstFNI CGCG 2 cut(s) 236, 365
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 3 cut(s) 236, 367, 395
BstKTI GATC 2 cut(s) 145, 439
BstMBI GATC 2 cut(s) 142, 436
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 31, 194
BstNSI RCATGY 2 cut(s) 25, 29
BstSCI CCNGG 2 cut(s) 130, 135
BstSFI CTRYAG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 2 cut(s) 236, 365
BstV1I GCAGC 3 cut(s) 114, 228, 402
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BstZ17I GTATAC 1 cut(s) 276
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 2 cut(s) 135, 188
BtsCI GGATG 3 cut(s) 145, 261, 297
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 5 cut(s) 23, 27, 195, 312, 363
CfoI GCGC 3 cut(s) 236, 367, 395
Csp6I GTAC 1 cut(s) 154
CviAII CATG 6 cut(s) 14, 22, 26, 82, 160, 319
CviJI RGCY 6 cut(s) 5, 135, 188, 205, 219, 380
CviKI_1 RGCY 6 cut(s) 5, 135, 188, 205, 219, 380
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 144, 438
DpnII GATC 2 cut(s) 142, 436
EaeI YGGCCR 2 cut(s) 133, 186
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 2 cut(s) 21, 277
EclXI CGGCCG 1 cut(s) 133
Eco47III AGCGCT 1 cut(s) 394
Eco52I CGGCCG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 27
FaeI CATG 6 cut(s) 17, 25, 29, 85, 163, 322
FaiI YATR 7 cut(s) 15, 23, 27, 83, 161, 276, 320
FaqI GGGAC 1 cut(s) 114
FatI CATG 6 cut(s) 13, 21, 25, 81, 159, 318
FauI CCCGC 1 cut(s) 404
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 6 cut(s) 6, 100, 103, 217, 348, 391
FokI GGATG 3 cut(s) 152, 268, 304
Fsp4HI GCNGC 6 cut(s) 6, 100, 103, 217, 348, 391
FspBI CTAG 2 cut(s) 57, 231
GlaI GCGC 3 cut(s) 235, 366, 394
GluI GCNGC 6 cut(s) 6, 100, 103, 217, 348, 391
GsaI CCCAGC 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 396
HaeIII GGCC 2 cut(s) 135, 188
HapII CCGG 3 cut(s) 123, 132, 136
HhaI GCGC 3 cut(s) 236, 367, 395
Hin1II CATG 6 cut(s) 17, 25, 29, 85, 163, 322
Hin6I GCGC 3 cut(s) 234, 365, 393
HinP1I GCGC 3 cut(s) 234, 365, 393
HpaII CCGG 3 cut(s) 123, 132, 136
HphI GGTGA 2 cut(s) 53, 431
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 402
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 3 cut(s) 65, 280, 432
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 25, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 194
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 6 cut(s) 17, 25, 29, 85, 163, 322
HspAI GCGC 3 cut(s) 234, 365, 393
Kzo9I GATC 2 cut(s) 142, 436
LmnI GCTCC 2 cut(s) 34, 387
Lsp1109I GCAGC 3 cut(s) 114, 228, 402
LweI GCATC 1 cut(s) 66
MaeI CTAG 2 cut(s) 57, 231
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 144, 438
MboI GATC 2 cut(s) 142, 436
MboII GAAGA 3 cut(s) 82, 109, 431
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 2 cut(s) 103, 453
Mph1103I ATGCAT 1 cut(s) 27
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 1 cut(s) 48
MspI CCGG 3 cut(s) 123, 132, 136
MspR9I CCNGG 2 cut(s) 132, 137
MvnI CGCG 2 cut(s) 236, 365
MwoI GCNNNNNNNGC 2 cut(s) 31, 194
NciI CCSGG 2 cut(s) 132, 137
NdeII GATC 2 cut(s) 142, 436
NlaIII CATG 6 cut(s) 17, 25, 29, 85, 163, 322
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 2 cut(s) 25, 29
PaeI GCATGC 2 cut(s) 25, 29
PdmI GAANNNNTTC 1 cut(s) 242
PkrI GCNGC 6 cut(s) 7, 101, 104, 218, 349, 392
PspFI CCCAGC 1 cut(s) 367
PstI CTGCAG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 6 cut(s) 6, 100, 103, 217, 348, 391
Sau3AI GATC 2 cut(s) 142, 436
ScrFI CCNGG 2 cut(s) 132, 137
SduI GDGCHC 1 cut(s) 363
SetI ASST 5 cut(s) 89, 114, 159, 221, 421
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 214
SpeI ACTAGT 1 cut(s) 56
SphI GCATGC 2 cut(s) 25, 29
SspMI CTAG 2 cut(s) 57, 231
StyD4I CCNGG 2 cut(s) 130, 135
TaaI ACNGT 3 cut(s) 65, 280, 432
TaiI ACGT 1 cut(s) 159
TauI GCSGC 2 cut(s) 102, 350
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 4 cut(s) 5, 102, 216, 390
Tsp45I GTSAC 1 cut(s) 59
TspRI CASTG 1 cut(s) 218
XceI RCATGY 2 cut(s) 25, 29
XmiI GTMKAC 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 2 cut(s) 57, 231
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.