MD12G1244900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016357
Physical Location & Seq
Reverse (-)
31552127 .. 31553409
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1244900.v1.1.491

Sequence Viewer

Length: 462 bp
ATGAAGAACAACACTGGGATCACATCGTTGAAGCAGCAATACGGTGGAGATCATGGAAGTAAAGGAATGGTGCAACTTGAAGTTGATGGAGGAGAATTAGATTTGCTTGATGGGATGTATGATAAGCCACTTTCATGCTTCGGTTGTGGCATTGGATGGTTCTCGTTTCTCTTGGGATTTGCCTTTCCACCACTATGGTATTATGCTACAGTCCTTTACTTTGGGAACCACCTTAAAGACCCCAGGGAACGACCTGGCCTTGCAGCATCTGCCATTGCAGTAAGAAATTATGCAGATTTTTTCCTACAATTTTTTTGTCTTTTGATGTTTGGTGTTGACATTTTGTTTCCTCTTGTGCTGAAAACTTGCACTGGTGCAGGCTTTAATTTGCTCGGTCATCGTCGCGGTTGCTCTACTCGTTGTTTTCTGCTTGCAGTAGCAGCTGGTGTTATGTCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.82

Weight (kDa)

7.6

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02370 FvH4_6g02370
malus_domestica MD12G1244900.v1.1
prunus_persica Prupe.6G347500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450131
rosa_laevigata RLG00000025753
rosa_multiflora Rmu_co8005752.1_g000001
rosa_roxburghii Rroxscaffold_6G00427900
rosa_rugosa Rorug02G0625700 Rorug02G0625800
rosa_samantha Rh3AG025000 Rh3BG025600 Rh3CG024500 Rh3DG025600
rosa_wichuraiana Rw3G002000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 405
AciI CCGC 1 cut(s) 405
AclWI GGATC 1 cut(s) 26
AgsI TTSAA 2 cut(s) 31, 80
AjnI CCWGG 2 cut(s) 242, 253
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 34, 263, 440
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BbvI GCAGC 3 cut(s) 46, 275, 452
BccI CCATC 3 cut(s) 80, 104, 150
BciT130I CCWGG 2 cut(s) 244, 255
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 3 cut(s) 35, 264, 441
BlsI GCNGC 3 cut(s) 36, 265, 442
Bme1390I CCNGG 2 cut(s) 244, 255
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 2 cut(s) 244, 255
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 242, 243
Bse1I ACTGG 2 cut(s) 19, 376
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 2 cut(s) 244, 255
BseDI CCNNGG 2 cut(s) 242, 243
BseGI GGATG 2 cut(s) 120, 161
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 19, 376
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 46, 275, 452
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 1 cut(s) 258
BsnI GGCC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 18, 49
BspACI CCGC 1 cut(s) 405
BspANI GGCC 1 cut(s) 258
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 2 cut(s) 19, 376
BssECI CCNNGG 2 cut(s) 242, 243
BssMI GATC 2 cut(s) 18, 49
Bst2UI CCWGG 2 cut(s) 244, 255
Bst4CI ACNGT 2 cut(s) 44, 211
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 379, 432
BstF5I GGATG 2 cut(s) 120, 161
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 2 cut(s) 21, 52
BstMBI GATC 2 cut(s) 18, 49
BstMWI GCNNNNNNNGC 2 cut(s) 269, 440
BstNI CCWGG 2 cut(s) 244, 255
BstSCI CCNGG 2 cut(s) 242, 253
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 46, 275, 452
BstXI CCANNNNNNTGG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 2 cut(s) 120, 161
BtsIMutI CAGTG 2 cut(s) 12, 369
Cac8I GCNNGC 2 cut(s) 379, 432
CaiI CAGNNNCTG 1 cut(s) 269
CviAII CATG 2 cut(s) 53, 135
CviJI RGCY 4 cut(s) 127, 258, 381, 443
CviKI_1 RGCY 4 cut(s) 127, 258, 381, 443
DpnI GATC 2 cut(s) 20, 51
DpnII GATC 2 cut(s) 18, 49
EcoRII CCWGG 2 cut(s) 242, 253
FaeI CATG 2 cut(s) 56, 138
FaiI YATR 7 cut(s) 54, 120, 136, 196, 204, 291, 452
FatI CATG 2 cut(s) 52, 134
Fnu4HI GCNGC 3 cut(s) 35, 264, 441
FokI GGATG 2 cut(s) 127, 168
Fsp4HI GCNGC 3 cut(s) 35, 264, 441
GluI GCNGC 3 cut(s) 35, 264, 441
HaeIII GGCC 1 cut(s) 258
Hin1II CATG 2 cut(s) 56, 138
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 337
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 1 cut(s) 405
HpyCH4III ACNGT 2 cut(s) 44, 211
HpyCH4V TGCA 7 cut(s) 73, 263, 278, 293, 369, 377, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 440
Hsp92II CATG 2 cut(s) 56, 138
Kzo9I GATC 2 cut(s) 18, 49
LpnPI CCDG 7 cut(s) 229, 240, 256, 267, 357, 363, 429
Lsp1109I GCAGC 3 cut(s) 46, 275, 452
LweI GCATC 1 cut(s) 275
MalI GATC 2 cut(s) 20, 51
MboI GATC 2 cut(s) 18, 49
MboII GAAGA 1 cut(s) 16
MluCI AATT 4 cut(s) 95, 286, 308, 385
MnlI CCTC 2 cut(s) 83, 360
MseI TTAA 3 cut(s) 234, 384, 460
MslI CAYNNNNRTG 2 cut(s) 133, 193
MspA1I CMGCKG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 244, 255
MvaI CCWGG 2 cut(s) 244, 255
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 269, 440
NdeII GATC 2 cut(s) 18, 49
NlaIII CATG 2 cut(s) 56, 138
NlaIV GGNNCC 1 cut(s) 227
PasI CCCWGGG 1 cut(s) 243
PkrI GCNGC 3 cut(s) 36, 265, 442
Psp6I CCWGG 2 cut(s) 242, 253
PspGI CCWGG 2 cut(s) 242, 253
PspN4I GGNNCC 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 443
RseI CAYNNNNRTG 2 cut(s) 133, 193
SaqAI TTAA 3 cut(s) 234, 384, 460
SatI GCNGC 3 cut(s) 35, 264, 441
Sau3AI GATC 2 cut(s) 18, 49
ScrFI CCNGG 2 cut(s) 244, 255
SetI ASST 3 cut(s) 234, 256, 445
SfaNI GCATC 1 cut(s) 275
SfcI CTRYAG 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 133, 193
Sse9I AATT 4 cut(s) 95, 286, 308, 385
SsiI CCGC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 242, 253
TaaI ACNGT 2 cut(s) 44, 211
TaqII GACCGA 1 cut(s) 383
TasI AATT 4 cut(s) 95, 286, 308, 385
Tru1I TTAA 3 cut(s) 234, 384, 460
Tru9I TTAA 3 cut(s) 234, 384, 460
TscAI CASTG 2 cut(s) 19, 376
TseI GCWGC 3 cut(s) 34, 263, 440
TspDTI ATGAA 2 cut(s) 17, 123
TspRI CASTG 2 cut(s) 19, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.