Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8005752.1

Orthogroup ID

OG0016357

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 395

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8005752.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgaagtaccatgtgactgttctagctggagaccatgataagaaagaaatggtgaaactcgaagttgatggaggaggagactcggctttggtagaggctagattctctgatggggtgtatgataagcctctatcatgctttggttgtggcattggatggttctccagatttctattgggatttgcttttcctccactctggtactatgcaacagtgctttactttgggaattatcttaaagaccctagagagagacccggccttgcagcatctgcaattgcagtaagaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.8

Weight (kDa)

6.71

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016357)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02370 FvH4_6g02370
malus_domestica	MD12G1244900.v1.1
prunus_persica	Prupe.6G347500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0450131
rosa_laevigata	RLG00000025753
rosa_multiflora	Rmu_co8005752.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427900
rosa_rugosa	Rorug02G0625700 Rorug02G0625800
rosa_samantha	Rh3AG025000 Rh3BG025600 Rh3CG024500 Rh3DG025600
rosa_wichuraiana	Rw3G002000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	8, 203
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	3 cut(s)	24, 72, 247
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	3 cut(s)	62, 104, 150
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	3 cut(s)	24, 72, 247
BfaI	CTAG	3 cut(s)	23, 99, 246
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	278
BpmI	CTGGAG	2 cut(s)	48, 148
BpuMI	CCSGG	1 cut(s)	258
BsaI	GGTCTC	2 cut(s)	24, 247
BseGI	GGATG	1 cut(s)	161
BseRI	GAGGAG	2 cut(s)	87, 90
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	258
BsmAI	GTCTC	3 cut(s)	24, 72, 247
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	2 cut(s)	24, 247
BspANI	GGCC	1 cut(s)	261
BspTNI	GGTCTC	2 cut(s)	24, 247
Bst4CI	ACNGT	2 cut(s)	19, 214
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	161
BstMAI	GTCTC	3 cut(s)	24, 72, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	7, 202
CviAII	CATG	3 cut(s)	11, 35, 135
CviJI	RGCY	5 cut(s)	26, 86, 98, 127, 261
CviKI_1	RGCY	5 cut(s)	26, 86, 98, 127, 261
CviQI	GTAC	2 cut(s)	7, 202
Eco31I	GGTCTC	2 cut(s)	24, 247
FaeI	CATG	3 cut(s)	14, 38, 138
FaiI	YATR	5 cut(s)	12, 36, 120, 136, 207
FatI	CATG	3 cut(s)	10, 34, 134
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	3 cut(s)	23, 99, 246
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	2 cut(s)	48, 148
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	3 cut(s)	14, 38, 138
HinfI	GANTC	2 cut(s)	80, 102
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	19, 214
HpyCH4V	TGCA	4 cut(s)	209, 266, 275, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
Hsp92II	CATG	3 cut(s)	14, 38, 138
LpnPI	CCDG	4 cut(s)	12, 178, 184, 271
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	3 cut(s)	23, 99, 246
MaeIII	GTNAC	1 cut(s)	13
MfeI	CAATTG	1 cut(s)	276
MluCI	AATT	2 cut(s)	229, 276
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	65, 68, 88, 138, 201
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	258
NlaIII	CATG	3 cut(s)	14, 38, 138
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	8, 203
RsaNI	GTAC	2 cut(s)	7, 202
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	1 cut(s)	28
SfaNI	GCATC	1 cut(s)	278
Sse9I	AATT	2 cut(s)	229, 276
SspMI	CTAG	3 cut(s)	23, 99, 246
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	19, 214
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	229, 276
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	3 cut(s)	23, 99, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.