RchiOBHm_Chr3g0450131

60S ribosomal protein L18a-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
1758297 .. 1758759
463 bp
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UTR
Exon/CDS
Intron
PRQ41747

Sequence Viewer

Length: 357 bp
ATGAAGTACCGTGTGACTGTTCTAGCTGGAGACCATGATAAGAAAGAAATGGTGAAACTCGAAGTTGATGGAGGAGGAGACTCGGCTTTGGTAGAGGCTAGATTCTCTGATGGGGTGTATGATAAGCCTCTATCATGCTTTGGTTGTGGCATTGGATGGTTCTCATTTCTATTGGGATTTGCTTTTCCTCCACTCTGGTACTATGCAACAGTGCTTTACTTTGGGAATTATCTTAAAGACCCTAGAGAGAGACCCGGCCTTGCAGCATCTGCAATTGCAGTAAGAATGACACAAGAATTACTACTGCAATCTAATTACCGAGGCAATGTTCTAAATCAAACTCTAATTTTTGTGTAA

Protein Analysis

118

Amino Acids

13.21

Weight (kDa)

6.55

Isoelectric Point (pI)

23.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016357)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 8, 200
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 3 cut(s) 24, 72, 244
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 64
BbvI GCAGC 1 cut(s) 275
BccI CCATC 3 cut(s) 62, 104, 150
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 3 cut(s) 24, 72, 244
BfaI CTAG 3 cut(s) 23, 99, 243
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 255
BsaI GGTCTC 2 cut(s) 24, 244
BsaJI CCNNGG 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 331
BseRI GAGGAG 2 cut(s) 87, 90
BseXI GCAGC 1 cut(s) 275
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 255
BsmAI GTCTC 3 cut(s) 24, 72, 244
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 2 cut(s) 24, 244
BspANI GGCC 1 cut(s) 258
BspTNI GGTCTC 2 cut(s) 24, 244
BsrDI GCAATG 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 11, 19, 211
BstAPI GCANNNNNTGC 1 cut(s) 269
BstF5I GGATG 1 cut(s) 161
BstMAI GTCTC 3 cut(s) 24, 72, 244
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 269
Csp6I GTAC 2 cut(s) 7, 199
CviAII CATG 2 cut(s) 35, 135
CviJI RGCY 5 cut(s) 26, 86, 98, 127, 258
CviKI_1 RGCY 5 cut(s) 26, 86, 98, 127, 258
CviQI GTAC 2 cut(s) 7, 199
Eco31I GGTCTC 2 cut(s) 24, 244
FaeI CATG 2 cut(s) 38, 138
FaiI YATR 4 cut(s) 36, 120, 136, 204
FatI CATG 2 cut(s) 34, 134
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 3 cut(s) 23, 99, 243
GluI GCNGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 255
Hin1II CATG 2 cut(s) 38, 138
HinfI GANTC 2 cut(s) 80, 102
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 109
HpyCH4III ACNGT 3 cut(s) 11, 19, 211
HpyCH4V TGCA 5 cut(s) 206, 263, 272, 278, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 38, 138
LpnPI CCDG 3 cut(s) 12, 181, 268
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 1 cut(s) 275
MaeI CTAG 3 cut(s) 23, 99, 243
MaeIII GTNAC 1 cut(s) 13
MfeI CAATTG 1 cut(s) 273
MluCI AATT 5 cut(s) 226, 273, 296, 313, 345
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 6 cut(s) 65, 68, 88, 138, 198, 314
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 255
MunI CAATTG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 255
NlaIII CATG 2 cut(s) 38, 138
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 269
RsaI GTAC 2 cut(s) 8, 200
RsaNI GTAC 2 cut(s) 7, 199
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 264
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 255
SetI ASST 1 cut(s) 28
SfaNI GCATC 1 cut(s) 275
Sse9I AATT 5 cut(s) 226, 273, 296, 313, 345
SspMI CTAG 3 cut(s) 23, 99, 243
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 11, 19, 211
TaqI TCGA 1 cut(s) 60
TasI AATT 5 cut(s) 226, 273, 296, 313, 345
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 216
XspI CTAG 3 cut(s) 23, 99, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.