Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016357

Physical Location & Seq

Genomic Coordinates Forward (+)

1773769 .. 1774246

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTGAAACTCGAAGTTGATGGAGGAGGAGACTCGGCTTTGGTAGAGGCTAGATTCTCTGATGGGGTGTATGATAAGCCTCTATCATGCTTTGGTTGTGGCATTGGATGGTTCTCATTTCTATTGGGATTTGCTTTTCCTCCACTCTGGTACTATGCAACAGTGCTTTACTTTGGGAATTATCTTAAAGACCCAAGAGAGAGACCCGGCCTTGCAGCATCTGCAATTGCAGCTTTAATTTGCTCAGTCGTCTTGGTTGTCCTGCTTTTCTCACTTTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.21

Weight (kDa)

4.72

Isoelectric Point (pI)

25.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016357)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02370 FvH4_6g02370
malus_domestica	MD12G1244900.v1.1
prunus_persica	Prupe.6G347500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0450131
rosa_laevigata	RLG00000025753
rosa_multiflora	Rmu_co8005752.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427900
rosa_rugosa	Rorug02G0625700 Rorug02G0625800
rosa_samantha	Rh3AG025000 Rh3BG025600 Rh3CG024500 Rh3DG025600
rosa_wichuraiana	Rw3G002000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	152
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	24, 196
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	215, 230
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	227, 242
BccI	CCATC	3 cut(s)	14, 56, 102
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	24, 196
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	216, 231
BlsI	GCNGC	2 cut(s)	217, 232
Bme1390I	CCNGG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	196
BseGI	GGATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	39, 42
BseXI	GCAGC	2 cut(s)	227, 242
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	24, 196
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	244, 282
BstF5I	GGATG	1 cut(s)	113
BstMAI	GTCTC	2 cut(s)	24, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 230
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	227, 242
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	5 cut(s)	38, 50, 79, 210, 233
CviKI_1	RGCY	5 cut(s)	38, 50, 79, 210, 233
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	244, 282
Eco31I	GGTCTC	1 cut(s)	196
FaeI	CATG	1 cut(s)	90
FaiI	YATR	3 cut(s)	72, 88, 156
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	216, 231
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	216, 231
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	2 cut(s)	216, 231
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	1 cut(s)	90
HinfI	GANTC	2 cut(s)	32, 54
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	158, 215, 224, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 230
HpyF3I	CTNAG	2 cut(s)	244, 282
Hsp92II	CATG	1 cut(s)	90
LpnPI	CCDG	3 cut(s)	133, 220, 275
Lsp1109I	GCAGC	2 cut(s)	227, 242
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	51
MfeI	CAATTG	1 cut(s)	225
MluCI	AATT	3 cut(s)	178, 225, 237
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	5 cut(s)	17, 20, 40, 90, 150
MseI	TTAA	2 cut(s)	186, 236
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	221, 230
NciI	CCSGG	1 cut(s)	207
NlaIII	CATG	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	217, 232
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	186, 236
SatI	GCNGC	2 cut(s)	216, 231
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	1 cut(s)	235
SfaNI	GCATC	1 cut(s)	227
Sse9I	AATT	3 cut(s)	178, 225, 237
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	178, 225, 237
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	186, 236
Tru9I	TTAA	2 cut(s)	186, 236
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	2 cut(s)	215, 230
TspRI	CASTG	1 cut(s)	168
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.