Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016357

Physical Location & Seq

Genomic Coordinates Forward (+)

74187894 .. 74190313

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0625800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCGATTGGGTCGTTGTTCAGCTCTCCTCAATTTACCGCTAAAATCTCCCCGGCGACCGACAGCCGAACAAACCCTAACCCTAACCCGAGCCTCAACTTCTCGAATTTTCAGAGAGGCCCCTCCAGAACTAGAAATTTAAGCATCGGGACCGGGAATGGAGGATTGGGACAAACTAATCCCCATGGAGTTGGCGACAGAGACGGCGTCATCATCGTCGACCATGGCTCGCGCCGTAAGGAATCAAACCTCATGCTAAATGAGTTTGTGGACATGTTTAGGAAGAGAACTGGGTATGCTATAGTGGAGCCTGCTCATATGGAGTTGGCAGAACCTTCAATTCAAGACGCGTTCAATTCGTGTGTTGAAAAAGGTGCCAATCGTGTTATTGTTAGCCCGTTTTTCCTCCTACCAGGAAGACATTGGAACAAGGACATTCCATCCCTGACAGCCGAAGCTGCAAAGGAGCATCCTGGTGTGTCATATATGGTGACTGCGCCTCTAGGCCTCCACCCACTACTTGTGGATGTTATGAATGACAGAATCAATCACTGCTTGAGCCATGTTGCTGGAGATGCAGCTGAGTGTGCTGTTTGTGTTGGAACAGGCAAATGCCAACTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.44

Weight (kDa)

7.12

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	75 - 179	3.3e-32	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016357)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02370 FvH4_6g02370
malus_domestica	MD12G1244900.v1.1
prunus_persica	Prupe.6G347500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0450131
rosa_laevigata	RLG00000025753
rosa_multiflora	Rmu_co8005752.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427900
rosa_rugosa	Rorug02G0625700 Rorug02G0625800
rosa_samantha	Rh3AG025000 Rh3BG025600 Rh3CG024500 Rh3DG025600
rosa_wichuraiana	Rw3G002000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	2 cut(s)	232, 350
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	106, 136
AcyI	GRCGYC	1 cut(s)	207
AflIII	ACRYGT	2 cut(s)	273, 348
AgsI	TTSAA	4 cut(s)	339, 344, 355, 368
AjnI	CCWGG	2 cut(s)	412, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	24, 458, 581
AluI	AGCT	3 cut(s)	24, 458, 581
Alw26I	GTCTC	1 cut(s)	195
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	2 cut(s)	118, 505
ApeKI	GCWGC	2 cut(s)	458, 578
ApoI	RAATTY	2 cut(s)	106, 136
AspLEI	GCGC	2 cut(s)	234, 499
AspS9I	GGNCC	2 cut(s)	119, 150
AsuC2I	CCSGG	2 cut(s)	53, 154
AsuHPI	GGTGA	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	445, 590
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	2 cut(s)	219, 220
BciT130I	CCWGG	2 cut(s)	414, 474
BcnI	CCSGG	2 cut(s)	53, 154
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	2 cut(s)	132, 503
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	459, 579
BlsI	GCNGC	2 cut(s)	460, 580
Bme1390I	CCNGG	4 cut(s)	53, 154, 414, 474
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	119, 150
BmiI	GGNNCC	4 cut(s)	121, 151, 309, 376
BmrFI	CCNGG	4 cut(s)	53, 154, 414, 474
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	153, 478, 565
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	424
BpmI	CTGGAG	2 cut(s)	109, 591
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	53, 154
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	51, 184, 223
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	414, 474
BseDI	CCNNGG	3 cut(s)	51, 184, 223
BseGI	GGATG	3 cut(s)	440, 469, 532
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	445, 590
Bsh1236I	CGCG	2 cut(s)	232, 350
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	120, 507
BshNI	GGYRCC	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	53, 153
BslFI	GGGAC	2 cut(s)	163, 183
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	163, 183
BsnI	GGCC	2 cut(s)	120, 507
BsoBI	CYCGRG	1 cut(s)	88
Bsp19I	CCATGG	2 cut(s)	184, 223
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	120, 507
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	2 cut(s)	232, 350
BspLI	GGNNCC	4 cut(s)	121, 151, 309, 376
BspT107I	GGYRCC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	51, 184, 223
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	184, 223
Bst2UI	CCWGG	2 cut(s)	414, 474
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	230, 312
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	2 cut(s)	184, 223
BstF5I	GGATG	3 cut(s)	440, 469, 532
BstFNI	CGCG	2 cut(s)	232, 350
BstHHI	GCGC	2 cut(s)	234, 499
BstMAI	GTCTC	1 cut(s)	195
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 575, 587
BstNI	CCWGG	2 cut(s)	414, 474
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	4 cut(s)	51, 152, 412, 472
BstSFI	CTRYAG	1 cut(s)	300
BstUI	CGCG	2 cut(s)	232, 350
BstV1I	GCAGC	2 cut(s)	445, 590
BstV2I	GAAGAC	1 cut(s)	424
BstXI	CCANNNNNNTGG	2 cut(s)	191, 569
BsuRI	GGCC	2 cut(s)	120, 507
BtgI	CCRYGG	2 cut(s)	184, 223
BtsCI	GGATG	3 cut(s)	440, 469, 532
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	230, 312
CfoI	GCGC	2 cut(s)	234, 499
Cfr13I	GGNCC	2 cut(s)	119, 150
CseI	GACGC	2 cut(s)	196, 356
CviAII	CATG	5 cut(s)	185, 224, 253, 274, 563
DdeI	CTNAG	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	184, 223
Eco147I	AGGCCT	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	412, 472
EcoT14I	CCWWGG	2 cut(s)	184, 223
ErhI	CCWWGG	2 cut(s)	184, 223
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	5 cut(s)	188, 227, 256, 277, 566
FaqI	GGGAC	2 cut(s)	163, 183
FatI	CATG	5 cut(s)	184, 223, 252, 273, 562
FauNDI	CATATG	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	459, 579
FokI	GGATG	3 cut(s)	427, 456, 539
Fsp4HI	GCNGC	2 cut(s)	459, 579
FspBI	CTAG	2 cut(s)	132, 503
GlaI	GCGC	2 cut(s)	233, 498
GluI	GCNGC	2 cut(s)	459, 579
GsuI	CTGGAG	2 cut(s)	109, 591
HaeIII	GGCC	2 cut(s)	120, 507
HapII	CCGG	2 cut(s)	53, 153
HgaI	GACGC	2 cut(s)	196, 356
HhaI	GCGC	2 cut(s)	234, 499
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	5 cut(s)	188, 227, 256, 277, 566
Hin6I	GCGC	2 cut(s)	232, 497
HinP1I	GCGC	2 cut(s)	232, 497
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	242, 543
HpaII	CCGG	2 cut(s)	53, 153
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	220, 271
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	4 cut(s)	103, 126, 148, 344
Hpy8I	GTNNAC	2 cut(s)	220, 271
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	461, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 575, 587
HpyF3I	CTNAG	1 cut(s)	582
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	188, 227, 256, 277, 566
HspAI	GCGC	2 cut(s)	232, 497
LmnI	GCTCC	2 cut(s)	307, 466
Lsp1109I	GCAGC	2 cut(s)	445, 590
LweI	GCATC	3 cut(s)	153, 478, 565
MaeI	CTAG	2 cut(s)	132, 503
MaeIII	GTNAC	1 cut(s)	490
MboII	GAAGA	2 cut(s)	295, 429
MluCI	AATT	5 cut(s)	32, 106, 136, 339, 355
MluI	ACGCGT	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	9 cut(s)	39, 104, 110, 133, 155, 260, 416, 510, 518
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	2 cut(s)	53, 153
MspR9I	CCNGG	4 cut(s)	53, 154, 414, 474
MvaI	CCWGG	2 cut(s)	414, 474
MvnI	CGCG	2 cut(s)	232, 350
MwoI	GCNNNNNNNGC	3 cut(s)	458, 575, 587
NciI	CCSGG	2 cut(s)	53, 154
NcoI	CCATGG	2 cut(s)	184, 223
NdeI	CATATG	1 cut(s)	318
NlaIII	CATG	5 cut(s)	188, 227, 256, 277, 566
NlaIV	GGNNCC	4 cut(s)	121, 151, 309, 376
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	507
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	242, 543
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	460, 580
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	412, 472
PspGI	CCWGG	2 cut(s)	412, 472
PspN4I	GGNNCC	4 cut(s)	121, 151, 309, 376
PspPI	GGNCC	2 cut(s)	119, 150
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	581
RseI	CAYNNNNRTG	1 cut(s)	474
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	459, 579
Sau96I	GGNCC	2 cut(s)	119, 150
ScrFI	CCNGG	4 cut(s)	53, 154, 414, 474
SetI	ASST	6 cut(s)	26, 252, 337, 376, 460, 583
SfaNI	GCATC	3 cut(s)	153, 478, 565
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	5 cut(s)	32, 106, 136, 339, 355
SseBI	AGGCCT	1 cut(s)	507
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	132, 503
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	4 cut(s)	51, 152, 412, 472
StyI	CCWWGG	2 cut(s)	184, 223
TaqI	TCGA	3 cut(s)	5, 104, 219
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	5 cut(s)	32, 106, 136, 339, 355
TfiI	GAWTC	2 cut(s)	242, 543
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	557
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	458, 578
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	557
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	2 cut(s)	106, 136
XceI	RCATGY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	2 cut(s)	132, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.