MD13G1047800.v1.1

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011372
Physical Location & Seq
Reverse (-)
3355290 .. 3360366
5077 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1047800.v1.1.491

Sequence Viewer

Length: 3009 bp
ATGATAGTCAGGTTAAGCCTCCTGGTTGCTGCTACCATTGCAGCGATTGCAGCAAGGCAGCACAGCATAAAAAACTCTGGTTCATCAGCCTCAACAGGCAGGCATTCAGAAAATGGTAAAGCAAACAGTAACCATCAAAGCGAGAAGGAAGACGAAGAGCAACTTACATATTCTGATGATAGCCTCAGAGAAAAGCATAAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGACGAGGAAGAGGTTAAGTTAATTAGCAGTGTATTTAACCGTGCTAGTGATATCGGAGATGAAGATATTTTACCTGAATTTGAAGATCTTTTATCCGGGGAGATTGAAATCCCATTACCTGTTAACAAGACAGATACAAAAGAGAAAGACATATATGAAGCTGAGATGGCAAATAATGCAAGTGAGCTGGAAAGGTTGCGTAATCTGGTAAAGGAATTGGAGGAAAGAGAAGTAAAGCTTGAAGGTGAATTACTTGAGTACTATGGATTGAAGGAACAAGAATCAGACGTTGATGAATTACAACGGCAACTCAAGATTAAGACAATGGAGATTGGCATGCTCAATATTACTATTAACTCTCTGCAGTCTGAGAGGAAGAAGCTTCAAGAAGAGCTTACATGGGGAGCTTCCGCCAAGAAGGAGCTAGAGGCAGCCAGGTACAAAATCAAGGAATTGCAGAGGCAGATTCAGCTCGATGCTAACCAGACAAAAGGCCAGTTACTGTTGCTCAAACAACAAGTTACTAATTTACAGGCTAAAGAGGAAGAAGCCGTCAAGAAAGATGCTGAAATTGAAAAGAAGCTGAAAGCTGTGAATCAATTAGAGGTGGAAGTCGTGGAGCTTAAGAGAAAGAACAAAGAACTTCAAATCGAAAAGAGAGAACTAACTATTAAGTTGAATGCTGCTGAAGCAAGAGTAGCAACCCTCTCCAACATGACGGAGACTGAAATGGTTGCTAATGTAAGAGAGGAGGTTAATAATTTAAAGCATGCAAATGAGGACCTATCGAAGCAGGTGGAAGGCCTTCAAATGAATAGGTTCAGTGAAGTTGAAGAGCTAGTGTACCTCCGTTGGGTAAATGCATGCTTGAGGTATGAGCTCCGGAACTATCAGACACCCCAAGGAAAGGTATCCGCTCGTGATCTAAACAAGAATCTGAGCCCCAAATCGCAGGAGAAGGCCAAACAACTGATGTTGGAGTATGCAGGATCAGAGCGTGGACAAGGGGATACAGATCTTGAGAGCAACTTCTCTCATCCGTCGTCCCCTGGAAGTGAAGATTTTGACAATGTTTCTATTGATAGTTCCACGAGTCGATATAGTAATCTCAGCAAGAAACCTGGTATAATGCAAAAGCTGAAAAGGTGGGGGAAAAGCAAAGACGATTCTAGTGTTCGTTCATCACCAGCTAGATCTTTGTCTGGAGGCTCTCCAAGCAGACCAAGTATGAGCGTTCGACCAAGGGGTCCCCTGGAATCCTTGATGATTAGGAATGCAAGCGACAGTGTTGCCATCACTACATTTGGGAAGGTGGATCAGGAACTTAATGATTCCCCTCAAACTCCCACTCTTCCGAACATTAGAACACAGATGTCTTCTAGCGACTCACCTAATTCTGTGGCATCATCTTTCCAGTTGATGTCGAAGTCAGTTGAAGGAGTTCTAGATGAGAAATATCCTGCTTACAAAGACCGGCATAGGTTGGCCTTAGAGAGAGAGAAGCAAATTAAGGAAAGGGCAGAGCAAGCAAGGGTAGAGAAGTTTGGCGACAAATCAAGTGTAAGTTTGAGCTACGAGCCTAGAGCCAAGGCTGAAAAGGAGAGATCAGTAGCTTTACCACCAAAACTTGCCCATATCAAGGAAAAGGCAGTTATTTCTGGCAATTCAAGCAACCAAAGTAATGATGGTAACGCCGATGGTAATGCTGTTGATCCTCAAGTAATAACCAAGATGAAACTTGCCCAAATTGAGAAAAGGCCTCCTCGGGTACCTCGCCCGCCTCCTAAGGCATCTGGAGGTGCCCCTGTTGGTACAACTCCCGGTCCCCCAAGTGGAGTACCACCTCCTCCACCTGGTGGCCCACCGCCACCGCCACCACCACCTGGTGGACCACCTCGTCCACCACCTCCACCAGGAAGCCTGCCTAAGGGGGCAAGTGGTGGTGATAAAGTACACCGCGCTCCTGAGCTGGTTGAATTCTATCAGTCATTGATGAAACGTGAAGCAAAGAAGGATACATCGTCTTTAATATCTTCATCATCTAATGTATCCGATGCGAGGAGCAATATGATTGGGGAGATTGAGAACAAATCATCATTCCTTTTAGCTGTGAAAGCTGATGTAGAAGCTCAAGGTGATTTTGTCATGTCGTTGGCAGCAGAAGTTCGAGCAGCTTTCTTCACAAACATAGAAGATCTTGTAGCATTTGTGAACTGGCTAGATGAAGAGCTCTCCTTCTTGGTTGACGAAAGGGCTGTCCTCAAGCACTTTGATTGGCCTGAAGGAAAAGTGGATGCACTAAGAGAAGCAGCTTTTGAGTACCAAGACTTGATGAAATTGGAGAAGCAAGTCTCCACTTTTGTTGATGATCCCAAACTCCCATGTGAAGCTGCTCTGAAGAAGATGTATTCGTTGCTTGAGAAGGTGGAACAGAGTGTATATGCTCTCTTGCGTACAAGAGACATGGCCATTTCACGGTGCAAGGAGTTTGGAATTCCAGTCGATTGGTTATTGGATTCAGGGGTTGTCGGCAAGATCAAGCTCTCATCTGTGCAATTGGCAAGAAAGTATATGAAACGTGTAGCTTCGGAACTTGATGCATTGAGTGGACCTGAGAAGGAACCAAACAGAGAGTTTATACTACTTCAAGGCGTGCGTTTTGCTTTCCGAGTTCATCAGTTTGCTGGAGGCTTTGATGCAGAGAGCATGAAGGCGTTCGAAGAGCTAAGGGGCCGTGTCCATGGACAAACAGAAGAAACTAATCAGGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1003

Amino Acids

111.77

Weight (kDa)

5.36

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25690 AT3G25690 AT3G25690 AT3G25690 AT3G25690 AT3G25690
fragaria_vesca FvH4_4g28201
malus_domestica MD13G1047800.v1.1
prunus_persica Prupe.1G304200_v2.0.a1 Prupe.1G304200_v2.0.a1
pyrus_communis pycom13g04200 pycom16g04300
rosa_chinensis RchiOBHm_Chr4g0435971
rosa_laevigata RLG00000006544
rosa_multiflora Rmu_sc0018865.1_g000007
rosa_roxburghii Rroxscaffold_5G00377140
rosa_rugosa Rorug04G0291000
rosa_samantha Rh4BG354200 Rh4CG368700
rosa_wichuraiana Rw4G030190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1018
AasI GACNNNNNNGTC 2 cut(s) 1479, 2130
Acc36I ACCTGC 1 cut(s) 1018
Acc65I GGTACC 1 cut(s) 2002
AccB1I GGYRCC 2 cut(s) 2002, 2033
AccB7I CCANNNNNTGG 3 cut(s) 2090, 2117, 2120
AccBSI CCGCTC 1 cut(s) 1151
AccII CGCG 1 cut(s) 2193
AccIII TCCGGA 1 cut(s) 1116
AciI CCGC 6 cut(s) 645, 1149, 2012, 2099, 2105, 2191
AclWI GGATC 4 cut(s) 1231, 1557, 1940, 2597
AcoI YGGCCR 1 cut(s) 2700
AcsI RAATTY 3 cut(s) 311, 2210, 2727
AcuI CTGAAG 3 cut(s) 942, 2535, 2651
AdeI CACNNNGTG 2 cut(s) 2090, 2120
AfaI GTAC 9 cut(s) 494, 674, 1079, 2004, 2047, 2073, 2187, 2555, 2689
AflII CTTAAG 1 cut(s) 857
AflIII ACRYGT 1 cut(s) 2812
AjnI CCWGG 8 cut(s) 21, 668, 1282, 1354, 1485, 2086, 2116, 2146
Alw21I GWGCWC 2 cut(s) 1116, 2466
Alw26I GTCTC 3 cut(s) 950, 2590, 2688
AlwI GGATC 4 cut(s) 1231, 1557, 1940, 2597
AlwNI CAGNNNCTG 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 1998
Aor13HI TCCGGA 1 cut(s) 1116
AoxI GGCC 9 cut(s) 727, 1036, 1194, 1719, 1991, 2092, 2510, 2700, 2965
ApoI RAATTY 3 cut(s) 311, 2210, 2727
ArsI GACNNNNNNTTYG 2 cut(s) 2475, 2507
Asp700I GAANNNNTTC 4 cut(s) 1038, 1052, 1674, 2948
Asp718I GGTACC 1 cut(s) 2002
AspLEI GCGC 1 cut(s) 2195
AspS9I GGNCC 7 cut(s) 1015, 1481, 2057, 2093, 2123, 2843, 2965
AsuC2I CCSGG 2 cut(s) 331, 2055
AsuHPI GGTGA 5 cut(s) 491, 1410, 1614, 2189, 2381
AsuII TTCGAA 1 cut(s) 2952
AvaI CYCGRG 1 cut(s) 1998
AvaII GGWCC 5 cut(s) 1015, 1481, 2057, 2123, 2843
AxyI CCTNAGG 2 cut(s) 2019, 2160
BaeGI GKGCMC 1 cut(s) 2038
BalI TGGCCA 1 cut(s) 2702
BanI GGYRCC 2 cut(s) 2002, 2033
BanII GRGCYC 3 cut(s) 1116, 1178, 2466
BarI GAAGNNNNNNTAC 4 cut(s) 288, 320, 468, 500
BauI CACGAG 2 cut(s) 1152, 1324
BbsI GAAGAC 3 cut(s) 156, 240, 1602
Bbv12I GWGCWC 2 cut(s) 1116, 2466
BccI CCATC 5 cut(s) 141, 394, 1535, 1913, 1925
BceAI ACGGC 3 cut(s) 554, 770, 2952
BcgI CGANNNNNNTGC 4 cut(s) 1505, 1539, 1919, 1953
BciT130I CCWGG 8 cut(s) 23, 670, 1284, 1356, 1487, 2088, 2118, 2148
BciVI GTATCC 4 cut(s) 1156, 1237, 2242, 2293
BcnI CCSGG 2 cut(s) 331, 2055
BcoDI GTCTC 3 cut(s) 950, 2590, 2688
BfaI CTAG 9 cut(s) 279, 659, 1073, 1404, 1425, 1614, 1679, 1815, 2453
BfmI CTRYAG 1 cut(s) 596
BfrI CTTAAG 1 cut(s) 857
BfuAI ACCTGC 1 cut(s) 1018
BfuI GTATCC 4 cut(s) 1156, 1237, 2242, 2293
BglII AGATCT 4 cut(s) 319, 1249, 1427, 2428
BmcAI AGTACT 1 cut(s) 494
Bme18I GGWCC 5 cut(s) 1015, 1481, 2057, 2123, 2843
BmeT110I CYCGRG 1 cut(s) 1998
BmgT120I GGNCC 7 cut(s) 1015, 1481, 2057, 2093, 2123, 2843, 2965
BmiI GGNNCC 7 cut(s) 1482, 1483, 2004, 2035, 2059, 2856, 2966
BmsI GCATC 8 cut(s) 700, 787, 1646, 2033, 2278, 2518, 2821, 2920
BpiI GAAGAC 3 cut(s) 156, 240, 1602
BpmI CTGGAG 3 cut(s) 1458, 2049, 2940
Bpu10I CCTNAGC 2 cut(s) 2199, 2960
Bpu14I TTCGAA 1 cut(s) 2952
BpuEI CTTGAG 8 cut(s) 509, 530, 1123, 1274, 1935, 2349, 2480, 2672
BpuMI CCSGG 2 cut(s) 331, 2055
BsaBI GATNNNNATC 2 cut(s) 341, 1248
BsaJI CCNNGG 8 cut(s) 330, 1135, 1282, 1475, 1485, 1821, 1997, 2974
BsaWI WCCGGW 1 cut(s) 1116
Bse118I RCCGGY 1 cut(s) 1707
Bse1I ACTGG 4 cut(s) 730, 1648, 2453, 2732
Bse21I CCTNAGG 2 cut(s) 2019, 2160
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 2 cut(s) 341, 1248
BseAI TCCGGA 1 cut(s) 1116
BseBI CCWGG 8 cut(s) 23, 670, 1284, 1356, 1487, 2088, 2118, 2148
BseDI CCNNGG 8 cut(s) 330, 1135, 1282, 1475, 1485, 1821, 1997, 2974
BseGI GGATG 2 cut(s) 1270, 2533
BseJI GATNNNNATC 2 cut(s) 341, 1248
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 7 cut(s) 199, 387, 594, 1163, 1357, 2190, 2838
BseNI ACTGG 4 cut(s) 730, 1648, 2453, 2732
BseRI GAGGAG 9 cut(s) 227, 230, 233, 236, 239, 998, 1986, 2070, 2308
BseSI GKGCMC 1 cut(s) 2038
Bsh1236I CGCG 1 cut(s) 2193
BshFI GGCC 9 cut(s) 729, 1038, 1196, 1721, 1993, 2094, 2512, 2702, 2967
BshNI GGYRCC 2 cut(s) 2002, 2033
BsiHKAI GWGCWC 2 cut(s) 1116, 2466
BsiHKCI CYCGRG 1 cut(s) 1998
BsiSI CCGG 4 cut(s) 330, 1117, 1708, 2055
BslFI GGGAC 3 cut(s) 1264, 1467, 2043
BsmAI GTCTC 3 cut(s) 950, 2590, 2688
BsmFI GGGAC 3 cut(s) 1264, 1467, 2043
BsmI GAATGC 3 cut(s) 103, 919, 1513
BsnI GGCC 9 cut(s) 729, 1038, 1196, 1721, 1993, 2094, 2512, 2702, 2967
BsoBI CYCGRG 1 cut(s) 1998
Bsp119I TTCGAA 1 cut(s) 2952
Bsp1286I GDGCHC 4 cut(s) 1116, 1178, 2038, 2466
Bsp13I TCCGGA 1 cut(s) 1116
Bsp19I CCATGG 1 cut(s) 2974
BspACI CCGC 6 cut(s) 645, 1149, 2012, 2099, 2105, 2191
BspANI GGCC 9 cut(s) 729, 1038, 1196, 1721, 1993, 2094, 2512, 2702, 2967
BspCNI CTCAG 7 cut(s) 198, 388, 595, 1164, 1356, 2191, 2839
BspEI TCCGGA 1 cut(s) 1116
BspFNI CGCG 1 cut(s) 2193
BspHI TCATGA 1 cut(s) 3005
BspLI GGNNCC 7 cut(s) 1482, 1483, 2004, 2035, 2059, 2856, 2966
BspMAI CTGCAG 1 cut(s) 600
BspMI ACCTGC 1 cut(s) 1018
BspPI GGATC 4 cut(s) 1231, 1557, 1940, 2597
BspQI GCTCTTC 5 cut(s) 150, 618, 1062, 2454, 2949
BspT104I TTCGAA 1 cut(s) 2952
BspT107I GGYRCC 2 cut(s) 2002, 2033
BspTI CTTAAG 1 cut(s) 857
BsrBI CCGCTC 1 cut(s) 1151
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 1707
BsrI ACTGG 4 cut(s) 730, 1648, 2453, 2732
BssAI RCCGGY 1 cut(s) 1707
BssECI CCNNGG 8 cut(s) 330, 1135, 1282, 1475, 1485, 1821, 1997, 2974
BssSI CACGAG 2 cut(s) 1152, 1324
BssT1I CCWWGG 4 cut(s) 1135, 1475, 1821, 2974
Bst2BI CACGAG 2 cut(s) 1152, 1324
Bst2UI CCWGG 8 cut(s) 23, 670, 1284, 1356, 1487, 2088, 2118, 2148
Bst4CI ACNGT 5 cut(s) 128, 275, 738, 1520, 2712
Bst6I CTCTTC 8 cut(s) 150, 204, 237, 618, 1062, 1590, 2454, 2949
BstAFI CTTAAG 1 cut(s) 857
BstAPI GCANNNNNTGC 2 cut(s) 47, 410
BstBI TTCGAA 1 cut(s) 2952
BstC8I GCNNGC 9 cut(s) 101, 572, 1005, 1099, 1513, 1761, 2012, 2156, 2888
BstDSI CCRYGG 1 cut(s) 2974
BstENI CCTNNNNNAGG 2 cut(s) 2145, 2159
BstF5I GGATG 2 cut(s) 1270, 2533
BstFNI CGCG 1 cut(s) 2193
BstHHI GCGC 1 cut(s) 2195
BstMAI GTCTC 3 cut(s) 950, 2590, 2688
BstNI CCWGG 8 cut(s) 23, 670, 1284, 1356, 1487, 2088, 2118, 2148
BstNSI RCATGY 3 cut(s) 574, 1007, 1101
BstSFI CTRYAG 1 cut(s) 596
BstSLI GKGCMC 1 cut(s) 2038
BstUI CGCG 1 cut(s) 2193
BstV2I GAAGAC 3 cut(s) 156, 240, 1602
BstX2I RGATCY 4 cut(s) 319, 1249, 1427, 2428
BstXI CCANNNNNNTGG 1 cut(s) 2739
BstYI RGATCY 4 cut(s) 319, 1249, 1427, 2428
Bsu36I CCTNAGG 2 cut(s) 2019, 2160
BsuI GTATCC 4 cut(s) 1156, 1237, 2242, 2293
BsuRI GGCC 9 cut(s) 729, 1038, 1196, 1721, 1993, 2094, 2512, 2702, 2967
BtgI CCRYGG 1 cut(s) 2974
BtsCI GGATG 2 cut(s) 1270, 2533
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 3 cut(s) 268, 1063, 1525
BveI ACCTGC 1 cut(s) 1018
Cac8I GCNNGC 9 cut(s) 101, 572, 1005, 1099, 1513, 1761, 2012, 2156, 2888
CaiI CAGNNNCTG 1 cut(s) 736
CciI TCATGA 1 cut(s) 3005
CfoI GCGC 1 cut(s) 2195
Cfr10I RCCGGY 1 cut(s) 1707
Cfr13I GGNCC 7 cut(s) 1015, 1481, 2057, 2093, 2123, 2843, 2965
CsiI ACCWGGT 3 cut(s) 1354, 2086, 2116
Csp6I GTAC 9 cut(s) 493, 673, 1078, 2003, 2046, 2072, 2186, 2554, 2688
CspCI CAANNNNNGTGG 2 cut(s) 2578, 2613
CviQI GTAC 9 cut(s) 493, 673, 1078, 2003, 2046, 2072, 2186, 2554, 2688
DraI TTTAAA 1 cut(s) 999
DraIII CACNNNGTG 2 cut(s) 2090, 2120
DrdI GACNNNNNNGTC 2 cut(s) 1479, 2130
DseDI GACNNNNNNGTC 2 cut(s) 1479, 2130
EaeI YGGCCR 1 cut(s) 2700
Eam1104I CTCTTC 8 cut(s) 150, 204, 237, 618, 1062, 1590, 2454, 2949
EarI CTCTTC 8 cut(s) 150, 204, 237, 618, 1062, 1590, 2454, 2949
EciI GGCGGA 1 cut(s) 634
Ecl136II GAGCTC 2 cut(s) 1114, 2464
Eco130I CCWWGG 4 cut(s) 1135, 1475, 1821, 2974
Eco147I AGGCCT 2 cut(s) 1038, 1993
Eco24I GRGCYC 3 cut(s) 1116, 1178, 2466
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 5 cut(s) 1015, 1481, 2057, 2123, 2843
Eco53kI GAGCTC 2 cut(s) 1114, 2464
Eco57I CTGAAG 3 cut(s) 942, 2535, 2651
Eco81I CCTNAGG 2 cut(s) 2019, 2160
Eco88I CYCGRG 1 cut(s) 1998
EcoICRI GAGCTC 2 cut(s) 1114, 2464
EcoNI CCTNNNNNAGG 2 cut(s) 2145, 2159
EcoO109I RGGNCCY 2 cut(s) 1015, 1481
EcoRI GAATTC 2 cut(s) 2210, 2727
EcoRII CCWGG 8 cut(s) 21, 668, 1282, 1354, 1485, 2086, 2116, 2146
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 4 cut(s) 1135, 1475, 1821, 2974
EcoT22I ATGCAT 2 cut(s) 1099, 2836
EcoT38I GRGCYC 3 cut(s) 1116, 1178, 2466
ErhI CCWWGG 4 cut(s) 1135, 1475, 1821, 2974
FalI AAGNNNNNCTT 6 cut(s) 147, 179, 456, 488, 612, 644
FaqI GGGAC 3 cut(s) 1264, 1467, 2043
FauI CCCGC 1 cut(s) 2019
FokI GGATG 2 cut(s) 1257, 2540
FriOI GRGCYC 3 cut(s) 1116, 1178, 2466
FspBI CTAG 9 cut(s) 279, 659, 1073, 1404, 1425, 1614, 1679, 1815, 2453
GlaI GCGC 1 cut(s) 2194
GsuI CTGGAG 3 cut(s) 1458, 2049, 2940
HaeIII GGCC 9 cut(s) 729, 1038, 1196, 1721, 1993, 2094, 2512, 2702, 2967
HapII CCGG 4 cut(s) 330, 1117, 1708, 2055
HhaI GCGC 1 cut(s) 2195
Hin6I GCGC 1 cut(s) 2193
HinP1I GCGC 1 cut(s) 2193
HincII GTYRAC 2 cut(s) 358, 2479
HindII GTYRAC 2 cut(s) 358, 2479
HindIII AAGCTT 2 cut(s) 470, 614
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 4 cut(s) 330, 1117, 1708, 2055
HphI GGTGA 5 cut(s) 491, 1410, 1614, 2189, 2381
Hpy166II GTNNAC 9 cut(s) 358, 1078, 1235, 2123, 2135, 2188, 2446, 2479, 2843
Hpy8I GTNNAC 9 cut(s) 358, 1078, 1235, 2123, 2135, 2188, 2446, 2479, 2843
Hpy99I CGWCG 1 cut(s) 1279
HpyCH4III ACNGT 5 cut(s) 128, 275, 738, 1520, 2712
HpyCH4IV ACGT 3 cut(s) 522, 2233, 2812
HpySE526I ACGT 3 cut(s) 522, 2233, 2812
HspAI GCGC 1 cut(s) 2193
KflI GGGWCCC 1 cut(s) 1481
Kpn2I TCCGGA 1 cut(s) 1116
KpnI GGTACC 1 cut(s) 2006
KspAI GTTAAC 1 cut(s) 358
LguI GCTCTTC 5 cut(s) 150, 618, 1062, 2454, 2949
LmnI GCTCC 6 cut(s) 638, 655, 853, 1119, 2200, 2295
LweI GCATC 8 cut(s) 700, 787, 1646, 2033, 2278, 2518, 2821, 2920
MabI ACCWGGT 3 cut(s) 1354, 2086, 2116
MaeI CTAG 9 cut(s) 279, 659, 1073, 1404, 1425, 1614, 1679, 1815, 2453
MaeII ACGT 3 cut(s) 522, 2233, 2812
MaeIII GTNAC 4 cut(s) 128, 732, 754, 1922
MbiI CCGCTC 1 cut(s) 1151
MfeI CAATTG 1 cut(s) 2789
MflI RGATCY 4 cut(s) 319, 1249, 1427, 2428
MhlI GDGCHC 4 cut(s) 1116, 1178, 2038, 2466
MlsI TGGCCA 1 cut(s) 2702
MluNI TGGCCA 1 cut(s) 2702
MlyI GAGTC 2 cut(s) 1336, 1613
MmeI TCCRAC 2 cut(s) 969, 1191
Mox20I TGGCCA 1 cut(s) 2702
Mph1103I ATGCAT 2 cut(s) 1099, 2836
MroI TCCGGA 1 cut(s) 1116
MroXI GAANNNNTTC 4 cut(s) 1038, 1052, 1674, 2948
MscI TGGCCA 1 cut(s) 2702
MslI CAYNNNNRTG 1 cut(s) 1008
Msp20I TGGCCA 1 cut(s) 2702
MspCI CTTAAG 1 cut(s) 857
MspI CCGG 4 cut(s) 330, 1117, 1708, 2055
MunI CAATTG 1 cut(s) 2789
Mva1269I GAATGC 3 cut(s) 103, 919, 1513
MvaI CCWGG 8 cut(s) 23, 670, 1284, 1356, 1487, 2088, 2118, 2148
MvnI CGCG 1 cut(s) 2193
NciI CCSGG 2 cut(s) 331, 2055
NcoI CCATGG 1 cut(s) 2974
NlaIV GGNNCC 7 cut(s) 1482, 1483, 2004, 2035, 2059, 2856, 2966
NsiI ATGCAT 2 cut(s) 1099, 2836
NspI RCATGY 3 cut(s) 574, 1007, 1101
NspV TTCGAA 1 cut(s) 2952
PaeI GCATGC 3 cut(s) 574, 1007, 1101
PagI TCATGA 1 cut(s) 3005
PaqCI CACCTGC 1 cut(s) 1018
PceI AGGCCT 2 cut(s) 1038, 1993
PciSI GCTCTTC 5 cut(s) 150, 618, 1062, 2454, 2949
PctI GAATGC 3 cut(s) 103, 919, 1513
PdmI GAANNNNTTC 4 cut(s) 1038, 1052, 1674, 2948
PfeI GAWTC 9 cut(s) 515, 700, 829, 1168, 1400, 1490, 1565, 2750, 3002
PflMI CCANNNNNTGG 3 cut(s) 2090, 2117, 2120
PleI GAGTC 2 cut(s) 1335, 1613
PpsI GAGTC 2 cut(s) 1335, 1613
PpuMI RGGWCCY 2 cut(s) 1015, 1481
Psp124BI GAGCTC 2 cut(s) 1116, 2466
Psp5II RGGWCCY 2 cut(s) 1015, 1481
Psp6I CCWGG 8 cut(s) 21, 668, 1282, 1354, 1485, 2086, 2116, 2146
PspGI CCWGG 8 cut(s) 21, 668, 1282, 1354, 1485, 2086, 2116, 2146
PspN4I GGNNCC 7 cut(s) 1482, 1483, 2004, 2035, 2059, 2856, 2966
PspPI GGNCC 7 cut(s) 1015, 1481, 2057, 2093, 2123, 2843, 2965
PspPPI RGGWCCY 2 cut(s) 1015, 1481
PstI CTGCAG 1 cut(s) 600
PstNI CAGNNNCTG 1 cut(s) 736
PsuI RGATCY 4 cut(s) 319, 1249, 1427, 2428
RsaI GTAC 9 cut(s) 494, 674, 1079, 2004, 2047, 2073, 2187, 2555, 2689
RsaNI GTAC 9 cut(s) 493, 673, 1078, 2003, 2046, 2072, 2186, 2554, 2688
RseI CAYNNNNRTG 1 cut(s) 1008
SacI GAGCTC 2 cut(s) 1116, 2466
SapI GCTCTTC 5 cut(s) 150, 618, 1062, 2454, 2949
Sau96I GGNCC 7 cut(s) 1015, 1481, 2057, 2093, 2123, 2843, 2965
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 2 cut(s) 1336, 1613
SduI GDGCHC 4 cut(s) 1116, 1178, 2038, 2466
SexAI ACCWGGT 3 cut(s) 1354, 2086, 2116
SfaNI GCATC 8 cut(s) 700, 787, 1646, 2033, 2278, 2518, 2821, 2920
SfcI CTRYAG 1 cut(s) 596
SfuI TTCGAA 1 cut(s) 2952
SinI GGWCC 5 cut(s) 1015, 1481, 2057, 2123, 2843
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 9 cut(s) 488, 545, 857, 1102, 1253, 1950, 2364, 2495, 2651
SmoI CTYRAG 9 cut(s) 488, 545, 857, 1102, 1253, 1950, 2364, 2495, 2651
SphI GCATGC 3 cut(s) 574, 1007, 1101
SseBI AGGCCT 2 cut(s) 1038, 1993
SsiI CCGC 6 cut(s) 645, 1149, 2012, 2099, 2105, 2191
SspI AATATT 1 cut(s) 580
SspMI CTAG 9 cut(s) 279, 659, 1073, 1404, 1425, 1614, 1679, 1815, 2453
SstI GAGCTC 2 cut(s) 1116, 2466
StuI AGGCCT 2 cut(s) 1038, 1993
StyI CCWWGG 4 cut(s) 1135, 1475, 1821, 2974
TaaI ACNGT 5 cut(s) 128, 275, 738, 1520, 2712
TaiI ACGT 3 cut(s) 525, 2236, 2815
TaqI TCGA 9 cut(s) 708, 885, 1022, 1330, 1471, 1658, 2401, 2736, 2952
TatI WGTACW 2 cut(s) 492, 2185
TfiI GAWTC 9 cut(s) 515, 700, 829, 1168, 1400, 1490, 1565, 2750, 3002
TscAI CASTG 3 cut(s) 268, 1063, 1525
TspGWI ACGGA 3 cut(s) 968, 1073, 1263
TspRI CASTG 3 cut(s) 268, 1063, 1525
Van91I CCANNNNNTGG 3 cut(s) 2090, 2117, 2120
Vha464I CTTAAG 1 cut(s) 857
VpaK11BI GGWCC 5 cut(s) 1015, 1481, 2057, 2123, 2843
XagI CCTNNNNNAGG 2 cut(s) 2145, 2159
XapI RAATTY 3 cut(s) 311, 2210, 2727
XbaI TCTAGA 1 cut(s) 1678
XceI RCATGY 3 cut(s) 574, 1007, 1101
XcmI CCANNNNNNNNNTGG 1 cut(s) 1916
XmnI GAANNNNTTC 4 cut(s) 1038, 1052, 1674, 2948
XspI CTAG 9 cut(s) 279, 659, 1073, 1404, 1425, 1614, 1679, 1815, 2453
ZrmI AGTACT 1 cut(s) 494
Zsp2I ATGCAT 2 cut(s) 1099, 2836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.