Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G25690 AT3G25690 AT3G25690 AT3G25690 AT3G25690 AT3G25690 |
| fragaria_vesca | FvH4_4g28201 |
| malus_domestica | MD13G1047800.v1.1 |
| prunus_persica | Prupe.1G304200_v2.0.a1 Prupe.1G304200_v2.0.a1 |
| pyrus_communis | pycom13g04200 pycom16g04300 |
| rosa_chinensis | RchiOBHm_Chr4g0435971 |
| rosa_laevigata | RLG00000006544 |
| rosa_multiflora | Rmu_sc0018865.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00377140 |
| rosa_rugosa | Rorug04G0291000 |
| rosa_samantha | Rh4BG354200 Rh4CG368700 |
| rosa_wichuraiana | Rw4G030190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1874 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2124 |
| Acc16I | TGCGCA | 1 cut(s) | 437 |
| Acc36I | ACCTGC | 1 cut(s) | 592 |
| AccB1I | GGYRCC | 2 cut(s) | 1993, 2021 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1720, 2084, 2111, 2114 |
| AccII | CGCG | 2 cut(s) | 1236, 2808 |
| AccIII | TCCGGA | 2 cut(s) | 1119, 1439 |
| AciI | CCGC | 5 cut(s) | 93, 1236, 1916, 2538, 2970 |
| AclWI | GGATC | 4 cut(s) | 1234, 1716, 1931, 2591 |
| AcoI | YGGCCR | 1 cut(s) | 2000 |
| AcsI | RAATTY | 4 cut(s) | 76, 317, 2721, 2861 |
| AcuI | CTGAAG | 5 cut(s) | 87, 1028, 2409, 2529, 2799 |
| AdeI | CACNNNGTG | 2 cut(s) | 2084, 2114 |
| AfaI | GTAC | 5 cut(s) | 497, 1082, 2035, 2683, 2781 |
| AflII | CTTAAG | 1 cut(s) | 860 |
| AflIII | ACRYGT | 1 cut(s) | 2806 |
| AjnI | CCWGG | 6 cut(s) | 280, 1285, 1554, 2080, 2110, 2140 |
| Alw21I | GWGCWC | 2 cut(s) | 2184, 2191 |
| Alw26I | GTCTC | 4 cut(s) | 953, 1349, 1975, 2584 |
| Alw44I | GTGCAC | 1 cut(s) | 2180 |
| AlwI | GGATC | 4 cut(s) | 1234, 1716, 1931, 2591 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 739, 962, 2218 |
| Ama87I | CYCGRG | 2 cut(s) | 491, 2050 |
| Aor13HI | TCCGGA | 2 cut(s) | 1119, 1439 |
| AoxI | GGCC | 9 cut(s) | 13, 730, 1197, 1722, 2000, 2086, 2481, 2504, 2959 |
| ApaLI | GTGCAC | 1 cut(s) | 2180 |
| ApeKI | GCWGC | 9 cut(s) | 26, 38, 47, 55, 433, 544, 668, 2399, 2618 |
| ApoI | RAATTY | 4 cut(s) | 76, 317, 2721, 2861 |
| AseI | ATTAAT | 1 cut(s) | 242 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1041, 1055, 1677, 2942 |
| AspA2I | CCTAGG | 1 cut(s) | 1988 |
| AspLEI | GCGC | 3 cut(s) | 438, 1236, 2162 |
| AspS9I | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2087, 2117, 2481, 2837, 2959, 2993 |
| AsuC2I | CCSGG | 2 cut(s) | 263, 1452 |
| AsuHPI | GGTGA | 7 cut(s) | 299, 494, 1617, 1796, 1910, 2183, 2375 |
| AsuII | TTCGAA | 1 cut(s) | 2946 |
| AvaI | CYCGRG | 2 cut(s) | 491, 2050 |
| AvaII | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2117, 2837, 2993 |
| AvrII | CCTAGG | 1 cut(s) | 1988 |
| BaeGI | GKGCMC | 2 cut(s) | 2026, 2184 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1327, 1360 |
| BanI | GGYRCC | 2 cut(s) | 1993, 2021 |
| BanII | GRGCYC | 2 cut(s) | 268, 1181 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 294, 326, 471, 503 |
| BauI | CACGAG | 2 cut(s) | 267, 1155 |
| BbsI | GAAGAC | 2 cut(s) | 153, 1034 |
| Bbv12I | GWGCWC | 2 cut(s) | 2184, 2191 |
| BbvI | GCAGC | 9 cut(s) | 13, 50, 59, 67, 420, 556, 680, 2411, 2605 |
| BccI | CCATC | 5 cut(s) | 188, 1285, 1514, 1543, 1913 |
| BceAI | ACGGC | 3 cut(s) | 446, 2468, 2946 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1875, 1909 |
| BciT130I | CCWGG | 6 cut(s) | 282, 1287, 1556, 2082, 2112, 2142 |
| BciVI | GTATCC | 3 cut(s) | 1240, 2052, 2236 |
| BclI | TGATCA | 1 cut(s) | 1759 |
| BcnI | CCSGG | 2 cut(s) | 263, 1452 |
| BcoDI | GTCTC | 4 cut(s) | 953, 1349, 1975, 2584 |
| BfaI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1989, 2280, 2447 |
| BfmI | CTRYAG | 1 cut(s) | 599 |
| BfrI | CTTAAG | 1 cut(s) | 860 |
| BfuAI | ACCTGC | 1 cut(s) | 592 |
| BfuI | GTATCC | 3 cut(s) | 1240, 2052, 2236 |
| BglII | AGATCT | 1 cut(s) | 325 |
| BlnI | CCTAGG | 1 cut(s) | 1988 |
| BmcAI | AGTACT | 1 cut(s) | 497 |
| Bme1390I | CCNGG | 8 cut(s) | 263, 282, 1287, 1452, 1556, 2082, 2112, 2142 |
| Bme18I | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2117, 2837, 2993 |
| BmeT110I | CYCGRG | 2 cut(s) | 491, 2050 |
| BmgT120I | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2087, 2117, 2481, 2837, 2959, 2993 |
| BmiI | GGNNCC | 5 cut(s) | 1485, 1995, 2023, 2850, 2960 |
| BmrFI | CCNGG | 8 cut(s) | 263, 282, 1287, 1452, 1556, 2082, 2112, 2142 |
| BmsI | GCATC | 5 cut(s) | 703, 2512, 2696, 2815, 2914 |
| BpiI | GAAGAC | 2 cut(s) | 153, 1034 |
| BpmI | CTGGAG | 5 cut(s) | 683, 1407, 2037, 2769, 2934 |
| Bpu10I | CCTNAGC | 4 cut(s) | 636, 1505, 2193, 2954 |
| Bpu14I | TTCGAA | 1 cut(s) | 2946 |
| BpuEI | CTTGAG | 6 cut(s) | 533, 1122, 1126, 1926, 2343, 2474 |
| BpuMI | CCSGG | 2 cut(s) | 263, 1452 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1435 |
| BsaI | GGTCTC | 1 cut(s) | 1975 |
| BsaJI | CCNNGG | 4 cut(s) | 1478, 1988, 1997, 2153 |
| BsaWI | WCCGGW | 2 cut(s) | 1119, 1439 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2029, 2059 |
| Bse1I | ACTGG | 6 cut(s) | 733, 1329, 1424, 1494, 2447, 2726 |
| Bse3DI | GCAATG | 2 cut(s) | 2639, 2835 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1435 |
| BseAI | TCCGGA | 2 cut(s) | 1119, 1439 |
| BseBI | CCWGG | 6 cut(s) | 282, 1287, 1556, 2082, 2112, 2142 |
| BseDI | CCNNGG | 4 cut(s) | 1478, 1988, 1997, 2153 |
| BseGI | GGATG | 4 cut(s) | 199, 229, 1924, 2527 |
| BseJI | GATNNNNATC | 1 cut(s) | 1435 |
| BseMI | GCAATG | 2 cut(s) | 2639, 2835 |
| BseMII | CTCAG | 5 cut(s) | 650, 1166, 1360, 2184, 2832 |
| BseNI | ACTGG | 6 cut(s) | 733, 1329, 1424, 1494, 2447, 2726 |
| BseRI | GAGGAG | 7 cut(s) | 227, 230, 233, 1563, 2064, 2091, 2124 |
| BseSI | GKGCMC | 2 cut(s) | 2026, 2184 |
| BseXI | GCAGC | 9 cut(s) | 13, 50, 59, 67, 420, 556, 680, 2411, 2605 |
| BsgI | GTGCAG | 1 cut(s) | 2418 |
| Bsh1236I | CGCG | 2 cut(s) | 1236, 2808 |
| Bsh1285I | CGRYCG | 1 cut(s) | 93 |
| BshFI | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 2002, 2088, 2483, 2506, 2961 |
| BshNI | GGYRCC | 2 cut(s) | 1993, 2021 |
| BsiEI | CGRYCG | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2184, 2191 |
| BsiHKCI | CYCGRG | 2 cut(s) | 491, 2050 |
| BsiSI | CCGG | 4 cut(s) | 262, 1120, 1440, 1451 |
| BslFI | GGGAC | 2 cut(s) | 1497, 2702 |
| BsmAI | GTCTC | 4 cut(s) | 953, 1349, 1975, 2584 |
| BsmFI | GGGAC | 2 cut(s) | 1497, 2702 |
| BsmI | GAATGC | 2 cut(s) | 1516, 2942 |
| BsnI | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 2002, 2088, 2483, 2506, 2961 |
| Bso31I | GGTCTC | 1 cut(s) | 1975 |
| BsoBI | CYCGRG | 2 cut(s) | 491, 2050 |
| Bsp119I | TTCGAA | 1 cut(s) | 2946 |
| Bsp1286I | GDGCHC | 5 cut(s) | 268, 1181, 2026, 2184, 2191 |
| Bsp13I | TCCGGA | 2 cut(s) | 1119, 1439 |
| Bsp1407I | TGTACA | 1 cut(s) | 2779 |
| Bsp143I | GATC | 9 cut(s) | 325, 1159, 1226, 1430, 1708, 1759, 1936, 2596, 2763 |
| BspACI | CCGC | 5 cut(s) | 93, 1236, 1916, 2538, 2970 |
| BspANI | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 2002, 2088, 2483, 2506, 2961 |
| BspCNI | CTCAG | 5 cut(s) | 649, 1167, 1359, 2185, 2833 |
| BspEI | TCCGGA | 2 cut(s) | 1119, 1439 |
| BspFNI | CGCG | 2 cut(s) | 1236, 2808 |
| BspLI | GGNNCC | 5 cut(s) | 1485, 1995, 2023, 2850, 2960 |
| BspMAI | CTGCAG | 1 cut(s) | 603 |
| BspMI | ACCTGC | 1 cut(s) | 592 |
| BspPI | GGATC | 4 cut(s) | 1234, 1716, 1931, 2591 |
| BspQI | GCTCTTC | 4 cut(s) | 147, 1065, 2448, 2943 |
| BspT104I | TTCGAA | 1 cut(s) | 2946 |
| BspT107I | GGYRCC | 2 cut(s) | 1993, 2021 |
| BspTI | CTTAAG | 1 cut(s) | 860 |
| BspTNI | GGTCTC | 1 cut(s) | 1975 |
| BsrDI | GCAATG | 2 cut(s) | 2639, 2835 |
| BsrGI | TGTACA | 1 cut(s) | 2779 |
| BsrI | ACTGG | 6 cut(s) | 733, 1329, 1424, 1494, 2447, 2726 |
| BssECI | CCNNGG | 4 cut(s) | 1478, 1988, 1997, 2153 |
| BssMI | GATC | 9 cut(s) | 325, 1159, 1226, 1430, 1708, 1759, 1936, 2596, 2763 |
| BssSI | CACGAG | 2 cut(s) | 267, 1155 |
| BssT1I | CCWWGG | 3 cut(s) | 1478, 1988, 2153 |
| Bst2BI | CACGAG | 2 cut(s) | 267, 1155 |
| Bst2UI | CCWGG | 6 cut(s) | 282, 1287, 1556, 2082, 2112, 2142 |
| Bst4CI | ACNGT | 6 cut(s) | 562, 741, 903, 1340, 2186, 2784 |
| BstAFI | CTTAAG | 1 cut(s) | 860 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 44, 413, 2881 |
| BstAUI | TGTACA | 1 cut(s) | 2779 |
| BstBI | TTCGAA | 1 cut(s) | 2946 |
| BstC8I | GCNNGC | 7 cut(s) | 575, 1008, 1102, 1238, 1516, 2150, 2882 |
| BstDEI | CTNAG | 9 cut(s) | 636, 838, 1175, 1346, 1505, 1726, 2193, 2841, 2954 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1729, 1874, 2079, 2139 |
| BstF5I | GGATG | 4 cut(s) | 199, 229, 1924, 2527 |
| BstFNI | CGCG | 2 cut(s) | 1236, 2808 |
| BstHHI | GCGC | 3 cut(s) | 438, 1236, 2162 |
| BstKTI | GATC | 9 cut(s) | 328, 1162, 1229, 1433, 1711, 1762, 1939, 2599, 2766 |
| BstMAI | GTCTC | 4 cut(s) | 953, 1349, 1975, 2584 |
| BstMBI | GATC | 9 cut(s) | 325, 1159, 1226, 1430, 1708, 1759, 1936, 2596, 2763 |
| BstMCI | CGRYCG | 1 cut(s) | 93 |
| BstNI | CCWGG | 6 cut(s) | 282, 1287, 1556, 2082, 2112, 2142 |
| BstNSI | RCATGY | 3 cut(s) | 577, 1010, 1104 |
| BstSCI | CCNGG | 8 cut(s) | 261, 280, 1285, 1450, 1554, 2080, 2110, 2140 |
| BstSFI | CTRYAG | 1 cut(s) | 599 |
| BstSLI | GKGCMC | 2 cut(s) | 2026, 2184 |
| BstUI | CGCG | 2 cut(s) | 1236, 2808 |
| BstV1I | GCAGC | 9 cut(s) | 13, 50, 59, 67, 420, 556, 680, 2411, 2605 |
| BstV2I | GAAGAC | 2 cut(s) | 153, 1034 |
| BstX2I | RGATCY | 1 cut(s) | 325 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1919, 2733 |
| BstYI | RGATCY | 1 cut(s) | 325 |
| BsuI | GTATCC | 3 cut(s) | 1240, 2052, 2236 |
| BsuRI | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 2002, 2088, 2483, 2506, 2961 |
| BtgZI | GCGATG | 1 cut(s) | 1533 |
| BtsCI | GGATG | 4 cut(s) | 199, 229, 1924, 2527 |
| BtsI | GCAGTG | 1 cut(s) | 256 |
| BtsIMutI | CAGTG | 5 cut(s) | 256, 528, 1066, 1431, 1487 |
| BveI | ACCTGC | 1 cut(s) | 592 |
| Cac8I | GCNNGC | 7 cut(s) | 575, 1008, 1102, 1238, 1516, 2150, 2882 |
| CaiI | CAGNNNCTG | 3 cut(s) | 739, 962, 2218 |
| CfoI | GCGC | 3 cut(s) | 438, 1236, 2162 |
| Cfr13I | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2087, 2117, 2481, 2837, 2959, 2993 |
| CsiI | ACCWGGT | 3 cut(s) | 280, 2080, 2110 |
| Csp6I | GTAC | 5 cut(s) | 496, 1081, 2034, 2682, 2780 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2572, 2607 |
| CviQI | GTAC | 5 cut(s) | 496, 1081, 2034, 2682, 2780 |
| DdeI | CTNAG | 9 cut(s) | 636, 838, 1175, 1346, 1505, 1726, 2193, 2841, 2954 |
| DpnI | GATC | 9 cut(s) | 327, 1161, 1228, 1432, 1710, 1761, 1938, 2598, 2765 |
| DpnII | GATC | 9 cut(s) | 325, 1159, 1226, 1430, 1708, 1759, 1936, 2596, 2763 |
| DraIII | CACNNNGTG | 2 cut(s) | 2084, 2114 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2124 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2124 |
| EaeI | YGGCCR | 1 cut(s) | 2000 |
| Eco130I | CCWWGG | 3 cut(s) | 1478, 1988, 2153 |
| Eco147I | AGGCCT | 1 cut(s) | 15 |
| Eco24I | GRGCYC | 2 cut(s) | 268, 1181 |
| Eco31I | GGTCTC | 1 cut(s) | 1975 |
| Eco32I | GATATC | 2 cut(s) | 526, 1149 |
| Eco47I | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2117, 2837, 2993 |
| Eco57I | CTGAAG | 5 cut(s) | 87, 1028, 2409, 2529, 2799 |
| Eco88I | CYCGRG | 2 cut(s) | 491, 2050 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1729, 1874, 2079, 2139 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1018 |
| EcoRI | GAATTC | 2 cut(s) | 76, 2721 |
| EcoRII | CCWGG | 6 cut(s) | 280, 1285, 1554, 2080, 2110, 2140 |
| EcoRV | GATATC | 2 cut(s) | 526, 1149 |
| EcoT14I | CCWWGG | 3 cut(s) | 1478, 1988, 2153 |
| EcoT38I | GRGCYC | 2 cut(s) | 268, 1181 |
| ErhI | CCWWGG | 3 cut(s) | 1478, 1988, 2153 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 144, 176, 459, 491, 1709, 1741 |
| FaqI | GGGAC | 2 cut(s) | 1497, 2702 |
| FauI | CCCGC | 1 cut(s) | 1229 |
| FbaI | TGATCA | 1 cut(s) | 1759 |
| FokI | GGATG | 4 cut(s) | 206, 236, 1931, 2534 |
| FriOI | GRGCYC | 2 cut(s) | 268, 1181 |
| FspBI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1989, 2280, 2447 |
| FspI | TGCGCA | 1 cut(s) | 437 |
| GlaI | GCGC | 3 cut(s) | 437, 1235, 2161 |
| GsuI | CTGGAG | 5 cut(s) | 683, 1407, 2037, 2769, 2934 |
| HaeIII | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 2002, 2088, 2483, 2506, 2961 |
| HapII | CCGG | 4 cut(s) | 262, 1120, 1440, 1451 |
| HhaI | GCGC | 3 cut(s) | 438, 1236, 2162 |
| Hin6I | GCGC | 3 cut(s) | 436, 1234, 2160 |
| HinP1I | GCGC | 3 cut(s) | 436, 1234, 2160 |
| HincII | GTYRAC | 1 cut(s) | 364 |
| HindII | GTYRAC | 1 cut(s) | 364 |
| HindIII | AAGCTT | 3 cut(s) | 617, 1373, 2146 |
| HinfI | GANTC | 9 cut(s) | 518, 703, 800, 926, 1171, 1403, 1568, 1901, 2744 |
| HpaI | GTTAAC | 1 cut(s) | 364 |
| HpaII | CCGG | 4 cut(s) | 262, 1120, 1440, 1451 |
| HphI | GGTGA | 7 cut(s) | 299, 494, 1617, 1796, 1910, 2183, 2375 |
| Hpy166II | GTNNAC | 9 cut(s) | 364, 485, 767, 1081, 2117, 2129, 2182, 2440, 2837 |
| Hpy188I | TCNGA | 9 cut(s) | 106, 135, 523, 805, 1047, 1131, 1176, 1231, 2818 |
| Hpy8I | GTNNAC | 9 cut(s) | 364, 485, 767, 1081, 2117, 2129, 2182, 2440, 2837 |
| HpyCH4III | ACNGT | 6 cut(s) | 562, 741, 903, 1340, 2186, 2784 |
| HpyCH4IV | ACGT | 3 cut(s) | 130, 2227, 3002 |
| HpyF3I | CTNAG | 9 cut(s) | 636, 838, 1175, 1346, 1505, 1726, 2193, 2841, 2954 |
| HpySE526I | ACGT | 3 cut(s) | 130, 2227, 3002 |
| HspAI | GCGC | 3 cut(s) | 436, 1234, 2160 |
| Kpn2I | TCCGGA | 2 cut(s) | 1119, 1439 |
| Ksp22I | TGATCA | 1 cut(s) | 1759 |
| KspAI | GTTAAC | 1 cut(s) | 364 |
| Kzo9I | GATC | 9 cut(s) | 325, 1159, 1226, 1430, 1708, 1759, 1936, 2596, 2763 |
| LguI | GCTCTTC | 4 cut(s) | 147, 1065, 2448, 2943 |
| LmnI | GCTCC | 6 cut(s) | 641, 658, 856, 2194, 2289, 2569 |
| Lsp1109I | GCAGC | 9 cut(s) | 13, 50, 59, 67, 420, 556, 680, 2411, 2605 |
| LweI | GCATC | 5 cut(s) | 703, 2512, 2696, 2815, 2914 |
| MabI | ACCWGGT | 3 cut(s) | 280, 2080, 2110 |
| MaeI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1989, 2280, 2447 |
| MaeII | ACGT | 3 cut(s) | 130, 2227, 3002 |
| MaeIII | GTNAC | 5 cut(s) | 269, 735, 937, 1185, 2363 |
| MalI | GATC | 9 cut(s) | 327, 1161, 1228, 1432, 1710, 1761, 1938, 2598, 2765 |
| MboI | GATC | 9 cut(s) | 325, 1159, 1226, 1430, 1708, 1759, 1936, 2596, 2763 |
| MfeI | CAATTG | 1 cut(s) | 33 |
| MflI | RGATCY | 1 cut(s) | 325 |
| MhlI | GDGCHC | 5 cut(s) | 268, 1181, 2026, 2184, 2191 |
| MluI | ACGCGT | 1 cut(s) | 2806 |
| MlyI | GAGTC | 1 cut(s) | 1562 |
| MmeI | TCCRAC | 2 cut(s) | 1194, 2547 |
| MroI | TCCGGA | 2 cut(s) | 1119, 1439 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1041, 1055, 1677, 2942 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1011 |
| MspA1I | CMGCKG | 1 cut(s) | 2970 |
| MspCI | CTTAAG | 1 cut(s) | 860 |
| MspI | CCGG | 4 cut(s) | 262, 1120, 1440, 1451 |
| MspR9I | CCNGG | 8 cut(s) | 263, 282, 1287, 1452, 1556, 2082, 2112, 2142 |
| MunI | CAATTG | 1 cut(s) | 33 |
| Mva1269I | GAATGC | 2 cut(s) | 1516, 2942 |
| MvaI | CCWGG | 6 cut(s) | 282, 1287, 1556, 2082, 2112, 2142 |
| MvnI | CGCG | 2 cut(s) | 1236, 2808 |
| NciI | CCSGG | 2 cut(s) | 263, 1452 |
| NdeII | GATC | 9 cut(s) | 325, 1159, 1226, 1430, 1708, 1759, 1936, 2596, 2763 |
| NlaIV | GGNNCC | 5 cut(s) | 1485, 1995, 2023, 2850, 2960 |
| NmeAIII | GCCGAG | 1 cut(s) | 1978 |
| NmuCI | GTSAC | 4 cut(s) | 269, 937, 1185, 2363 |
| NsbI | TGCGCA | 1 cut(s) | 437 |
| NspI | RCATGY | 3 cut(s) | 577, 1010, 1104 |
| NspV | TTCGAA | 1 cut(s) | 2946 |
| PaeI | GCATGC | 3 cut(s) | 577, 1010, 1104 |
| PaeR7I | CTCGAG | 2 cut(s) | 491, 2050 |
| PceI | AGGCCT | 1 cut(s) | 15 |
| PciSI | GCTCTTC | 4 cut(s) | 147, 1065, 2448, 2943 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2652 |
| PctI | GAATGC | 2 cut(s) | 1516, 2942 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1041, 1055, 1677, 2942 |
| PfeI | GAWTC | 8 cut(s) | 518, 703, 800, 926, 1171, 1403, 1901, 2744 |
| PflFI | GACNNNGTC | 1 cut(s) | 2369 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1720, 2084, 2111, 2114 |
| PleI | GAGTC | 1 cut(s) | 1562 |
| PpsI | GAGTC | 1 cut(s) | 1562 |
| PpuMI | RGGWCCY | 1 cut(s) | 1018 |
| PshBI | ATTAAT | 1 cut(s) | 242 |
| PsiI | TTATAA | 1 cut(s) | 1874 |
| Psp5II | RGGWCCY | 1 cut(s) | 1018 |
| Psp6I | CCWGG | 6 cut(s) | 280, 1285, 1554, 2080, 2110, 2140 |
| PspGI | CCWGG | 6 cut(s) | 280, 1285, 1554, 2080, 2110, 2140 |
| PspN4I | GGNNCC | 5 cut(s) | 1485, 1995, 2023, 2850, 2960 |
| PspPI | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2087, 2117, 2481, 2837, 2959, 2993 |
| PspPPI | RGGWCCY | 1 cut(s) | 1018 |
| PspXI | VCTCGAGB | 2 cut(s) | 491, 2050 |
| PstI | CTGCAG | 1 cut(s) | 603 |
| PstNI | CAGNNNCTG | 3 cut(s) | 739, 962, 2218 |
| PsuI | RGATCY | 1 cut(s) | 325 |
| PsyI | GACNNNGTC | 1 cut(s) | 2369 |
| RsaI | GTAC | 5 cut(s) | 497, 1082, 2035, 2683, 2781 |
| RsaNI | GTAC | 5 cut(s) | 496, 1081, 2034, 2682, 2780 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1011 |
| SapI | GCTCTTC | 4 cut(s) | 147, 1065, 2448, 2943 |
| Sau3AI | GATC | 9 cut(s) | 325, 1159, 1226, 1430, 1708, 1759, 1936, 2596, 2763 |
| Sau96I | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2087, 2117, 2481, 2837, 2959, 2993 |
| ScaI | AGTACT | 1 cut(s) | 497 |
| SchI | GAGTC | 1 cut(s) | 1562 |
| ScrFI | CCNGG | 8 cut(s) | 263, 282, 1287, 1452, 1556, 2082, 2112, 2142 |
| SduI | GDGCHC | 5 cut(s) | 268, 1181, 2026, 2184, 2191 |
| SexAI | ACCWGGT | 3 cut(s) | 280, 2080, 2110 |
| SfaNI | GCATC | 5 cut(s) | 703, 2512, 2696, 2815, 2914 |
| SfcI | CTRYAG | 1 cut(s) | 599 |
| Sfr274I | CTCGAG | 2 cut(s) | 491, 2050 |
| SfuI | TTCGAA | 1 cut(s) | 2946 |
| SinI | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2117, 2837, 2993 |
| SlaI | CTCGAG | 2 cut(s) | 491, 2050 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1011 |
| SmlI | CTYRAG | 9 cut(s) | 491, 548, 860, 1105, 1137, 1941, 2050, 2358, 2489 |
| SmoI | CTYRAG | 9 cut(s) | 491, 548, 860, 1105, 1137, 1941, 2050, 2358, 2489 |
| SphI | GCATGC | 3 cut(s) | 577, 1010, 1104 |
| SseBI | AGGCCT | 1 cut(s) | 15 |
| SsiI | CCGC | 5 cut(s) | 93, 1236, 1916, 2538, 2970 |
| SspI | AATATT | 1 cut(s) | 583 |
| SspMI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1989, 2280, 2447 |
| StuI | AGGCCT | 1 cut(s) | 15 |
| StyD4I | CCNGG | 8 cut(s) | 261, 280, 1285, 1450, 1554, 2080, 2110, 2140 |
| StyI | CCWWGG | 3 cut(s) | 1478, 1988, 2153 |
| TaaI | ACNGT | 6 cut(s) | 562, 741, 903, 1340, 2186, 2784 |
| TaiI | ACGT | 3 cut(s) | 133, 2230, 3005 |
| TatI | WGTACW | 2 cut(s) | 495, 2779 |
| TauI | GCSGC | 1 cut(s) | 2540 |
| TfiI | GAWTC | 8 cut(s) | 518, 703, 800, 926, 1171, 1403, 1901, 2744 |
| TscAI | CASTG | 5 cut(s) | 256, 535, 1066, 1431, 1494 |
| TseFI | GTSAC | 4 cut(s) | 269, 937, 1185, 2363 |
| TseI | GCWGC | 9 cut(s) | 26, 38, 47, 55, 433, 544, 668, 2399, 2618 |
| Tsp45I | GTSAC | 4 cut(s) | 269, 937, 1185, 2363 |
| TspGWI | ACGGA | 2 cut(s) | 1265, 2885 |
| TspRI | CASTG | 5 cut(s) | 256, 535, 1066, 1431, 1494 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2369 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1720, 2084, 2111, 2114 |
| Vha464I | CTTAAG | 1 cut(s) | 860 |
| VneI | GTGCAC | 1 cut(s) | 2180 |
| VpaK11BI | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2117, 2837, 2993 |
| VspI | ATTAAT | 1 cut(s) | 242 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1729, 1874, 2079, 2139 |
| XapI | RAATTY | 4 cut(s) | 76, 317, 2721, 2861 |
| XbaI | TCTAGA | 1 cut(s) | 1681 |
| XceI | RCATGY | 3 cut(s) | 577, 1010, 1104 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 658, 1919 |
| XhoI | CTCGAG | 2 cut(s) | 491, 2050 |
| XmaJI | CCTAGG | 1 cut(s) | 1988 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1041, 1055, 1677, 2942 |
| XspI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1989, 2280, 2447 |
| ZrmI | AGTACT | 1 cut(s) | 497 |