Rmu_sc0018865.1_g000007

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018865.1
OG0011372
Physical Location & Seq
Forward (+)
23779 .. 27971
4193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018865.1_g000007.1.cds

Sequence Viewer

Length: 2241 bp
atgataagattaggcctcttggttgctgcttcaattgcagcctttgcagcgaggcagctcaatgtcaaaaagccgaattcatcagcctcgaccgctagaccttcagaaaatggcgaaacgaactctaaacatcagagtgagaaggaagacgaagagcaacttgcatattctaatgatagcctcaaagagaaggatactgaaatggttgccaatgtaagaggcgaggtcaataatctaaagcatgcaaatgaggacctgttaaagcaagtggaaggtcttcagatgaacaggttcagtgaagttgaagagctagtgtaccttcgttggctaaacgcatgcttgaggtttgaactccggaactatcagacacctcaaggaaagatatcagctcgtgatctcaacaagaatctgagcccaaagtcacaggagaaggccaaacaactgatgttggagtatgcaggatcagagcgcgggcagggggatacagatatggaaagcaactattctcaaccatcttcgcctggaagtgaggattttgataatgcttctattgatagttccaccagtcgatacagtagtctcagtaaaagacctagcttaatccaaaagcttaaaaaatgggggaaaagcaaagatgattcaagttctctttcatctccagtgagatcattatccggaagctctccgggcagggcaagtatgagtgttcgaccaaggggaccactggaagcactaatgctaaggaatgcaagcgatggtgtagcaatcactacatttgggaagatggaccaggaacttccagactctcctcaaacacccactcttccaaacattagaacacaaatgccttctagcaactcacctaattctgtttcatcatctttccatgtgatgtctaaatctgttgaaggagttctagatgagaaatatcctgcgtataaggatcgtcataagttggccttagagagggaaaaacaaattaaggaaagggctgatcaggcaagagcagagaagtttggtgataaatcaaatgtaagtttcagctatgagcctagaacaaaagctgacaaggatagaatagttagtttgccacccaaacttacccttataaaggagaaggcagttatttcgggtgattcaagcaaccaagcggatggtggtaaggcttttgatcctcaagaaataagcaagatgaaacttgctcaaattgagaagagacctcctagggtgcctcggccacctcctaaatctggaggtgcccctgttggtacaactcccactccctcgagtgggataccactaccacctcctccaccaggtggcccacctccacctcctccaccacctggtggaccacctcgtccacctcctccaccaggaagcttgccaaggggcgcaggaggtggtgataaagtgcaccgtgctcctgagctggttgagttctatcagtcgctgatgaaacgtgaggcaaagaaggatacatcatctttaatatctacatcatcgaatgtatctagtgcaaggagcaacatgattggggagattgagaacaaatcatctttccttttagctgtgaaagctgatgttgaagctcaaggtgactttgtcatgtcattggcaactgaagttcgtgcagcttccttcacaaacattgatgatttggtagcctttgtgaactggctagatgaagagctctccttcttggttgatgaaagggccgtcctcaagcactttgattggcctgaagggaaagtggatgctttaagagaagccgcttttgaataccaagacttgatgaagttggagcagaaagtctccacttttgttgatgatcccaaactctcatgtgaagctgctctaaagaagatgtattcattgctcgaaaaggtcgaacagagtgtatatgctctgttgcgtacaagggacatggctatttcacgatgcaaggagtttggaattccagttgattggttattagattctggagttgttggcaagatcaagctctcatctgtacagttggcaagaaagtatatgaaacgcgtagcttcagaacttgatgcaatgagtggacctgagaaggaaccaaacagagaatttatacttctgcaaggcgtgcgttttgccttccgtgttcatcagtttgctggaggctttgatgcagagagcatgaaggcattcgaagagcttaggggtcgtgtcagcggacaaagagaagaagaaaatggaccagaaacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

746

Amino Acids

82.1

Weight (kDa)

8.06

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25690 AT3G25690 AT3G25690 AT3G25690 AT3G25690 AT3G25690
fragaria_vesca FvH4_4g28201
malus_domestica MD13G1047800.v1.1
prunus_persica Prupe.1G304200_v2.0.a1 Prupe.1G304200_v2.0.a1
pyrus_communis pycom13g04200 pycom16g04300
rosa_chinensis RchiOBHm_Chr4g0435971
rosa_laevigata RLG00000006544
rosa_multiflora Rmu_sc0018865.1_g000007
rosa_roxburghii Rroxscaffold_5G00377140
rosa_rugosa Rorug04G0291000
rosa_samantha Rh4BG354200 Rh4CG368700
rosa_wichuraiana Rw4G030190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1109
AasI GACNNNNNNGTC 1 cut(s) 1359
AccB1I GGYRCC 2 cut(s) 1228, 1256
AccB7I CCANNNNNTGG 3 cut(s) 1319, 1346, 1349
AccII CGCG 2 cut(s) 471, 2043
AccIII TCCGGA 2 cut(s) 354, 674
AciI CCGC 5 cut(s) 93, 471, 1151, 1773, 2205
AclWI GGATC 4 cut(s) 469, 951, 1166, 1826
AcoI YGGCCR 1 cut(s) 1235
AcsI RAATTY 3 cut(s) 76, 1956, 2096
AcuI CTGAAG 5 cut(s) 87, 263, 1644, 1764, 2034
AdeI CACNNNGTG 2 cut(s) 1319, 1349
AfaI GTAC 4 cut(s) 317, 1270, 1918, 2016
AflIII ACRYGT 1 cut(s) 2041
AgsI TTSAA 8 cut(s) 33, 305, 350, 642, 908, 1140, 1589, 1781
AjnI CCWGG 5 cut(s) 520, 789, 1315, 1345, 1375
Alw21I GWGCWC 3 cut(s) 1419, 1426, 1695
Alw26I GTCTC 3 cut(s) 584, 1210, 1819
Alw44I GTGCAC 1 cut(s) 1415
AlwI GGATC 4 cut(s) 469, 951, 1166, 1826
AlwNI CAGNNNCTG 1 cut(s) 1453
Ama87I CYCGRG 1 cut(s) 1285
Aor13HI TCCGGA 2 cut(s) 354, 674
AoxI GGCC 7 cut(s) 13, 432, 957, 1235, 1321, 1716, 1739
ApaLI GTGCAC 1 cut(s) 1415
ApeKI GCWGC 6 cut(s) 26, 38, 47, 55, 1634, 1853
ApoI RAATTY 3 cut(s) 76, 1956, 2096
Asp700I GAANNNNTTC 4 cut(s) 276, 290, 912, 2177
AspA2I CCTAGG 1 cut(s) 1223
AspLEI GCGC 2 cut(s) 471, 1397
AspS9I GGNCC 8 cut(s) 253, 719, 787, 1322, 1352, 1716, 2072, 2228
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 5 cut(s) 852, 1031, 1145, 1418, 1610
AsuII TTCGAA 1 cut(s) 2181
AvaI CYCGRG 1 cut(s) 1285
AvaII GGWCC 6 cut(s) 253, 719, 787, 1352, 2072, 2228
AvrII CCTAGG 1 cut(s) 1223
BaeGI GKGCMC 2 cut(s) 1261, 1419
BaeI ACNNNNGTAYC 2 cut(s) 562, 595
BanI GGYRCC 2 cut(s) 1228, 1256
BanII GRGCYC 2 cut(s) 416, 1695
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 2 cut(s) 153, 269
Bbv12I GWGCWC 3 cut(s) 1419, 1426, 1695
BbvI GCAGC 6 cut(s) 13, 50, 59, 67, 1646, 1840
BccI CCATC 4 cut(s) 520, 749, 778, 1148
BceAI ACGGC 1 cut(s) 1703
BcgI CGANNNNNNTGC 2 cut(s) 1110, 1144
BciT130I CCWGG 5 cut(s) 522, 791, 1317, 1347, 1377
BciVI GTATCC 4 cut(s) 187, 475, 1287, 1471
BclI TGATCA 1 cut(s) 994
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 3 cut(s) 584, 1210, 1819
BfaI CTAG 9 cut(s) 96, 311, 594, 852, 917, 1053, 1224, 1515, 1682
BfuI GTATCC 4 cut(s) 187, 475, 1287, 1471
BisI GCNGC 7 cut(s) 27, 39, 48, 56, 1635, 1773, 1854
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 7 cut(s) 28, 40, 49, 57, 1636, 1774, 1855
Bme1390I CCNGG 6 cut(s) 522, 687, 791, 1317, 1347, 1377
Bme18I GGWCC 6 cut(s) 253, 719, 787, 1352, 2072, 2228
BmeT110I CYCGRG 1 cut(s) 1285
BmgT120I GGNCC 8 cut(s) 253, 719, 787, 1322, 1352, 1716, 2072, 2228
BmiI GGNNCC 4 cut(s) 720, 1230, 1258, 2085
BmrFI CCNGG 6 cut(s) 522, 687, 791, 1317, 1347, 1377
BmsI GCATC 4 cut(s) 1747, 1931, 2050, 2149
BpiI GAAGAC 2 cut(s) 153, 269
BpmI CTGGAG 4 cut(s) 642, 1272, 2004, 2169
Bpu10I CCTNAGC 3 cut(s) 740, 1428, 2189
Bpu14I TTCGAA 1 cut(s) 2181
BpuEI CTTGAG 5 cut(s) 357, 361, 1161, 1578, 1709
BpuMI CCSGG 1 cut(s) 687
BsaBI GATNNNNATC 1 cut(s) 670
BsaI GGTCTC 1 cut(s) 1210
BsaJI CCNNGG 4 cut(s) 713, 1223, 1232, 1388
BsaWI WCCGGW 2 cut(s) 354, 674
BsaXI ACNNNNNCTCC 2 cut(s) 1264, 1294
Bse1I ACTGG 5 cut(s) 564, 659, 729, 1682, 1961
Bse3DI GCAATG 2 cut(s) 1874, 2070
Bse8I GATNNNNATC 1 cut(s) 670
BseAI TCCGGA 2 cut(s) 354, 674
BseBI CCWGG 5 cut(s) 522, 791, 1317, 1347, 1377
BseDI CCNNGG 4 cut(s) 713, 1223, 1232, 1388
BseGI GGATG 2 cut(s) 1159, 1762
BseJI GATNNNNATC 1 cut(s) 670
BseMI GCAATG 2 cut(s) 1874, 2070
BseMII CTCAG 4 cut(s) 401, 595, 1419, 2067
BseNI ACTGG 5 cut(s) 564, 659, 729, 1682, 1961
BseRI GAGGAG 4 cut(s) 798, 1299, 1326, 1359
BseSI GKGCMC 2 cut(s) 1261, 1419
BseXI GCAGC 6 cut(s) 13, 50, 59, 67, 1646, 1840
BsgI GTGCAG 1 cut(s) 1653
Bsh1236I CGCG 2 cut(s) 471, 2043
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 7 cut(s) 15, 434, 959, 1237, 1323, 1718, 1741
BshNI GGYRCC 2 cut(s) 1228, 1256
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 3 cut(s) 1419, 1426, 1695
BsiHKCI CYCGRG 1 cut(s) 1285
BsiSI CCGG 3 cut(s) 355, 675, 686
BslFI GGGAC 2 cut(s) 732, 1937
BsmAI GTCTC 3 cut(s) 584, 1210, 1819
BsmFI GGGAC 2 cut(s) 732, 1937
BsmI GAATGC 2 cut(s) 751, 2177
BsnI GGCC 7 cut(s) 15, 434, 959, 1237, 1323, 1718, 1741
Bso31I GGTCTC 1 cut(s) 1210
BsoBI CYCGRG 1 cut(s) 1285
Bsp119I TTCGAA 1 cut(s) 2181
Bsp1286I GDGCHC 5 cut(s) 416, 1261, 1419, 1426, 1695
Bsp13I TCCGGA 2 cut(s) 354, 674
Bsp1407I TGTACA 1 cut(s) 2014
Bsp143I GATC 8 cut(s) 394, 461, 665, 943, 994, 1171, 1831, 1998
BspACI CCGC 5 cut(s) 93, 471, 1151, 1773, 2205
BspANI GGCC 7 cut(s) 15, 434, 959, 1237, 1323, 1718, 1741
BspCNI CTCAG 4 cut(s) 402, 594, 1420, 2068
BspEI TCCGGA 2 cut(s) 354, 674
BspFNI CGCG 2 cut(s) 471, 2043
BspLI GGNNCC 4 cut(s) 720, 1230, 1258, 2085
BspPI GGATC 4 cut(s) 469, 951, 1166, 1826
BspQI GCTCTTC 4 cut(s) 147, 300, 1683, 2178
BspT104I TTCGAA 1 cut(s) 2181
BspT107I GGYRCC 2 cut(s) 1228, 1256
BspTNI GGTCTC 1 cut(s) 1210
BsrDI GCAATG 2 cut(s) 1874, 2070
BsrGI TGTACA 1 cut(s) 2014
BsrI ACTGG 5 cut(s) 564, 659, 729, 1682, 1961
BssECI CCNNGG 4 cut(s) 713, 1223, 1232, 1388
BssMI GATC 8 cut(s) 394, 461, 665, 943, 994, 1171, 1831, 1998
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 3 cut(s) 713, 1223, 1388
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 5 cut(s) 522, 791, 1317, 1347, 1377
Bst4CI ACNGT 3 cut(s) 575, 1421, 2019
Bst6I CTCTTC 6 cut(s) 147, 300, 828, 1208, 1683, 2178
BstAPI GCANNNNNTGC 2 cut(s) 44, 2116
BstAUI TGTACA 1 cut(s) 2014
BstBI TTCGAA 1 cut(s) 2181
BstC8I GCNNGC 6 cut(s) 243, 337, 473, 751, 1385, 2117
BstDEI CTNAG 7 cut(s) 410, 581, 740, 961, 1428, 2076, 2189
BstENI CCTNNNNNAGG 4 cut(s) 964, 1109, 1314, 1374
BstF5I GGATG 2 cut(s) 1159, 1762
BstFNI CGCG 2 cut(s) 471, 2043
BstHHI GCGC 2 cut(s) 471, 1397
BstKTI GATC 8 cut(s) 397, 464, 668, 946, 997, 1174, 1834, 2001
BstMAI GTCTC 3 cut(s) 584, 1210, 1819
BstMBI GATC 8 cut(s) 394, 461, 665, 943, 994, 1171, 1831, 1998
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 8 cut(s) 35, 44, 47, 92, 687, 998, 1577, 2116
BstNI CCWGG 5 cut(s) 522, 791, 1317, 1347, 1377
BstNSI RCATGY 2 cut(s) 245, 339
BstSCI CCNGG 6 cut(s) 520, 685, 789, 1315, 1345, 1375
BstSLI GKGCMC 2 cut(s) 1261, 1419
BstUI CGCG 2 cut(s) 471, 2043
BstV1I GCAGC 6 cut(s) 13, 50, 59, 67, 1646, 1840
BstV2I GAAGAC 2 cut(s) 153, 269
BstXI CCANNNNNNTGG 2 cut(s) 1154, 1968
BsuI GTATCC 4 cut(s) 187, 475, 1287, 1471
BsuRI GGCC 7 cut(s) 15, 434, 959, 1237, 1323, 1718, 1741
BtgZI GCGATG 1 cut(s) 768
BtsCI GGATG 2 cut(s) 1159, 1762
BtsIMutI CAGTG 3 cut(s) 301, 666, 722
Cac8I GCNNGC 6 cut(s) 243, 337, 473, 751, 1385, 2117
CaiI CAGNNNCTG 1 cut(s) 1453
CfoI GCGC 2 cut(s) 471, 1397
Cfr13I GGNCC 8 cut(s) 253, 719, 787, 1322, 1352, 1716, 2072, 2228
CsiI ACCWGGT 2 cut(s) 1315, 1345
Csp6I GTAC 4 cut(s) 316, 1269, 1917, 2015
CspCI CAANNNNNGTGG 2 cut(s) 1807, 1842
CviAII CATG 8 cut(s) 242, 336, 887, 1531, 1609, 1845, 1927, 2170
CviQI GTAC 4 cut(s) 316, 1269, 1917, 2015
DdeI CTNAG 7 cut(s) 410, 581, 740, 961, 1428, 2076, 2189
DpnI GATC 8 cut(s) 396, 463, 667, 945, 996, 1173, 1833, 2000
DpnII GATC 8 cut(s) 394, 461, 665, 943, 994, 1171, 1831, 1998
DraIII CACNNNGTG 2 cut(s) 1319, 1349
DrdI GACNNNNNNGTC 1 cut(s) 1359
DseDI GACNNNNNNGTC 1 cut(s) 1359
EaeI YGGCCR 1 cut(s) 1235
Eam1104I CTCTTC 6 cut(s) 147, 300, 828, 1208, 1683, 2178
EarI CTCTTC 6 cut(s) 147, 300, 828, 1208, 1683, 2178
Ecl136II GAGCTC 1 cut(s) 1693
Eco130I CCWWGG 3 cut(s) 713, 1223, 1388
Eco147I AGGCCT 1 cut(s) 15
Eco24I GRGCYC 2 cut(s) 416, 1695
Eco31I GGTCTC 1 cut(s) 1210
Eco32I GATATC 1 cut(s) 384
Eco47I GGWCC 6 cut(s) 253, 719, 787, 1352, 2072, 2228
Eco53kI GAGCTC 1 cut(s) 1693
Eco57I CTGAAG 5 cut(s) 87, 263, 1644, 1764, 2034
Eco88I CYCGRG 1 cut(s) 1285
EcoICRI GAGCTC 1 cut(s) 1693
EcoNI CCTNNNNNAGG 4 cut(s) 964, 1109, 1314, 1374
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 2 cut(s) 76, 1956
EcoRII CCWGG 5 cut(s) 520, 789, 1315, 1345, 1375
EcoRV GATATC 1 cut(s) 384
EcoT14I CCWWGG 3 cut(s) 713, 1223, 1388
EcoT38I GRGCYC 2 cut(s) 416, 1695
ErhI CCWWGG 3 cut(s) 713, 1223, 1388
FaeI CATG 8 cut(s) 245, 339, 890, 1534, 1612, 1848, 1930, 2173
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 944, 976
FaqI GGGAC 2 cut(s) 732, 1937
FatI CATG 8 cut(s) 241, 335, 886, 1530, 1608, 1844, 1926, 2169
FauI CCCGC 1 cut(s) 464
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 7 cut(s) 27, 39, 48, 56, 1635, 1773, 1854
FokI GGATG 2 cut(s) 1166, 1769
FriOI GRGCYC 2 cut(s) 416, 1695
Fsp4HI GCNGC 7 cut(s) 27, 39, 48, 56, 1635, 1773, 1854
FspBI CTAG 9 cut(s) 96, 311, 594, 852, 917, 1053, 1224, 1515, 1682
GlaI GCGC 2 cut(s) 470, 1396
GluI GCNGC 7 cut(s) 27, 39, 48, 56, 1635, 1773, 1854
GsuI CTGGAG 4 cut(s) 642, 1272, 2004, 2169
HaeIII GGCC 7 cut(s) 15, 434, 959, 1237, 1323, 1718, 1741
HapII CCGG 3 cut(s) 355, 675, 686
HhaI GCGC 2 cut(s) 471, 1397
Hin1II CATG 8 cut(s) 245, 339, 890, 1534, 1612, 1848, 1930, 2173
Hin6I GCGC 2 cut(s) 469, 1395
HinP1I GCGC 2 cut(s) 469, 1395
HindIII AAGCTT 2 cut(s) 608, 1381
HinfI GANTC 5 cut(s) 406, 638, 803, 1136, 1979
HpaII CCGG 3 cut(s) 355, 675, 686
HphI GGTGA 5 cut(s) 852, 1031, 1145, 1418, 1610
Hpy166II GTNNAC 6 cut(s) 316, 1352, 1364, 1417, 1675, 2072
Hpy188I TCNGA 7 cut(s) 106, 135, 282, 366, 411, 466, 2053
Hpy8I GTNNAC 6 cut(s) 316, 1352, 1364, 1417, 1675, 2072
HpyCH4III ACNGT 3 cut(s) 575, 1421, 2019
HpyCH4IV ACGT 2 cut(s) 1462, 2237
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 44, 47, 92, 687, 998, 1577, 2116
HpyF3I CTNAG 7 cut(s) 410, 581, 740, 961, 1428, 2076, 2189
HpySE526I ACGT 2 cut(s) 1462, 2237
Hsp92II CATG 8 cut(s) 245, 339, 890, 1534, 1612, 1848, 1930, 2173
HspAI GCGC 2 cut(s) 469, 1395
Kpn2I TCCGGA 2 cut(s) 354, 674
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 8 cut(s) 394, 461, 665, 943, 994, 1171, 1831, 1998
LguI GCTCTTC 4 cut(s) 147, 300, 1683, 2178
LmnI GCTCC 3 cut(s) 1429, 1524, 1804
Lsp1109I GCAGC 6 cut(s) 13, 50, 59, 67, 1646, 1840
LweI GCATC 4 cut(s) 1747, 1931, 2050, 2149
MabI ACCWGGT 2 cut(s) 1315, 1345
MaeI CTAG 9 cut(s) 96, 311, 594, 852, 917, 1053, 1224, 1515, 1682
MaeII ACGT 2 cut(s) 1462, 2237
MaeIII GTNAC 2 cut(s) 420, 1598
MalI GATC 8 cut(s) 396, 463, 667, 945, 996, 1173, 1833, 2000
MboI GATC 8 cut(s) 394, 461, 665, 943, 994, 1171, 1831, 1998
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 5 cut(s) 416, 1261, 1419, 1426, 1695
MluCI AATT 7 cut(s) 33, 76, 865, 978, 1206, 1956, 2096
MluI ACGCGT 1 cut(s) 2041
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 429, 1782
MroI TCCGGA 2 cut(s) 354, 674
MroXI GAANNNNTTC 4 cut(s) 276, 290, 912, 2177
MseI TTAA 6 cut(s) 260, 599, 612, 981, 1490, 1763
MslI CAYNNNNRTG 2 cut(s) 135, 246
MspA1I CMGCKG 1 cut(s) 2205
MspI CCGG 3 cut(s) 355, 675, 686
MspR9I CCNGG 6 cut(s) 522, 687, 791, 1317, 1347, 1377
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 2 cut(s) 751, 2177
MvaI CCWGG 5 cut(s) 522, 791, 1317, 1347, 1377
MvnI CGCG 2 cut(s) 471, 2043
MwoI GCNNNNNNNGC 8 cut(s) 35, 44, 47, 92, 687, 998, 1577, 2116
NciI CCSGG 1 cut(s) 687
NdeII GATC 8 cut(s) 394, 461, 665, 943, 994, 1171, 1831, 1998
NlaIII CATG 8 cut(s) 245, 339, 890, 1534, 1612, 1848, 1930, 2173
NlaIV GGNNCC 4 cut(s) 720, 1230, 1258, 2085
NmeAIII GCCGAG 1 cut(s) 1213
NmuCI GTSAC 2 cut(s) 420, 1598
NspI RCATGY 2 cut(s) 245, 339
NspV TTCGAA 1 cut(s) 2181
PaeI GCATGC 2 cut(s) 245, 339
PaeR7I CTCGAG 1 cut(s) 1285
PceI AGGCCT 1 cut(s) 15
PciSI GCTCTTC 4 cut(s) 147, 300, 1683, 2178
PcsI WCGNNNNNNNCGW 1 cut(s) 1887
PctI GAATGC 2 cut(s) 751, 2177
PdmI GAANNNNTTC 4 cut(s) 276, 290, 912, 2177
PfeI GAWTC 4 cut(s) 406, 638, 1136, 1979
PflFI GACNNNGTC 1 cut(s) 1604
PflMI CCANNNNNTGG 3 cut(s) 1319, 1346, 1349
PkrI GCNGC 7 cut(s) 28, 40, 49, 57, 1636, 1774, 1855
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
PpuMI RGGWCCY 1 cut(s) 253
PsiI TTATAA 1 cut(s) 1109
Psp124BI GAGCTC 1 cut(s) 1695
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 5 cut(s) 520, 789, 1315, 1345, 1375
PspGI CCWGG 5 cut(s) 520, 789, 1315, 1345, 1375
PspN4I GGNNCC 4 cut(s) 720, 1230, 1258, 2085
PspPI GGNCC 8 cut(s) 253, 719, 787, 1322, 1352, 1716, 2072, 2228
PspPPI RGGWCCY 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 1285
PstNI CAGNNNCTG 1 cut(s) 1453
PsyI GACNNNGTC 1 cut(s) 1604
RsaI GTAC 4 cut(s) 317, 1270, 1918, 2016
RsaNI GTAC 4 cut(s) 316, 1269, 1917, 2015
RseI CAYNNNNRTG 2 cut(s) 135, 246
SacI GAGCTC 1 cut(s) 1695
SapI GCTCTTC 4 cut(s) 147, 300, 1683, 2178
SaqAI TTAA 6 cut(s) 260, 599, 612, 981, 1490, 1763
SatI GCNGC 7 cut(s) 27, 39, 48, 56, 1635, 1773, 1854
Sau3AI GATC 8 cut(s) 394, 461, 665, 943, 994, 1171, 1831, 1998
Sau96I GGNCC 8 cut(s) 253, 719, 787, 1322, 1352, 1716, 2072, 2228
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 6 cut(s) 522, 687, 791, 1317, 1347, 1377
SduI GDGCHC 5 cut(s) 416, 1261, 1419, 1426, 1695
SexAI ACCWGGT 2 cut(s) 1315, 1345
SfaNI GCATC 4 cut(s) 1747, 1931, 2050, 2149
Sfr274I CTCGAG 1 cut(s) 1285
SfuI TTCGAA 1 cut(s) 2181
SinI GGWCC 6 cut(s) 253, 719, 787, 1352, 2072, 2228
SlaI CTCGAG 1 cut(s) 1285
SmiMI CAYNNNNRTG 2 cut(s) 135, 246
SmlI CTYRAG 6 cut(s) 340, 372, 1176, 1285, 1593, 1724
SmoI CTYRAG 6 cut(s) 340, 372, 1176, 1285, 1593, 1724
SphI GCATGC 2 cut(s) 245, 339
Sse9I AATT 7 cut(s) 33, 76, 865, 978, 1206, 1956, 2096
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 5 cut(s) 93, 471, 1151, 1773, 2205
SspMI CTAG 9 cut(s) 96, 311, 594, 852, 917, 1053, 1224, 1515, 1682
SstI GAGCTC 1 cut(s) 1695
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 6 cut(s) 520, 685, 789, 1315, 1345, 1375
StyI CCWWGG 3 cut(s) 713, 1223, 1388
TaaI ACNGT 3 cut(s) 575, 1421, 2019
TaiI ACGT 2 cut(s) 1465, 2240
TaqI TCGA 8 cut(s) 89, 568, 709, 1286, 1505, 1881, 1890, 2181
TasI AATT 7 cut(s) 33, 76, 865, 978, 1206, 1956, 2096
TatI WGTACW 1 cut(s) 2014
TauI GCSGC 1 cut(s) 1775
TfiI GAWTC 4 cut(s) 406, 638, 1136, 1979
Tru1I TTAA 6 cut(s) 260, 599, 612, 981, 1490, 1763
Tru9I TTAA 6 cut(s) 260, 599, 612, 981, 1490, 1763
TscAI CASTG 3 cut(s) 301, 666, 729
TseFI GTSAC 2 cut(s) 420, 1598
TseI GCWGC 6 cut(s) 26, 38, 47, 55, 1634, 1853
Tsp45I GTSAC 2 cut(s) 420, 1598
TspGWI ACGGA 1 cut(s) 2120
TspRI CASTG 3 cut(s) 301, 666, 729
Tth111I GACNNNGTC 1 cut(s) 1604
Van91I CCANNNNNTGG 3 cut(s) 1319, 1346, 1349
VneI GTGCAC 1 cut(s) 1415
VpaK11BI GGWCC 6 cut(s) 253, 719, 787, 1352, 2072, 2228
XagI CCTNNNNNAGG 4 cut(s) 964, 1109, 1314, 1374
XapI RAATTY 3 cut(s) 76, 1956, 2096
XbaI TCTAGA 1 cut(s) 916
XceI RCATGY 2 cut(s) 245, 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 1154
XhoI CTCGAG 1 cut(s) 1285
XmaJI CCTAGG 1 cut(s) 1223
XmnI GAANNNNTTC 4 cut(s) 276, 290, 912, 2177
XspI CTAG 9 cut(s) 96, 311, 594, 852, 917, 1053, 1224, 1515, 1682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.