Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G25690 AT3G25690 AT3G25690 AT3G25690 AT3G25690 AT3G25690 |
| fragaria_vesca | FvH4_4g28201 |
| malus_domestica | MD13G1047800.v1.1 |
| prunus_persica | Prupe.1G304200_v2.0.a1 Prupe.1G304200_v2.0.a1 |
| pyrus_communis | pycom13g04200 pycom16g04300 |
| rosa_chinensis | RchiOBHm_Chr4g0435971 |
| rosa_laevigata | RLG00000006544 |
| rosa_multiflora | Rmu_sc0018865.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00377140 |
| rosa_rugosa | Rorug04G0291000 |
| rosa_samantha | Rh4BG354200 Rh4CG368700 |
| rosa_wichuraiana | Rw4G030190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1874 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2091 |
| Acc16I | TGCGCA | 1 cut(s) | 437 |
| Acc36I | ACCTGC | 1 cut(s) | 592 |
| AccB1I | GGYRCC | 2 cut(s) | 1960, 1988 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2051, 2078, 2081 |
| AccII | CGCG | 2 cut(s) | 1236, 2775 |
| AccIII | TCCGGA | 2 cut(s) | 1119, 1439 |
| AciI | CCGC | 5 cut(s) | 93, 1236, 2060, 2505, 2937 |
| AclWI | GGATC | 4 cut(s) | 1234, 1716, 1898, 2558 |
| AcoI | YGGCCR | 1 cut(s) | 1967 |
| AcsI | RAATTY | 4 cut(s) | 76, 317, 2688, 2828 |
| AcuI | CTGAAG | 5 cut(s) | 87, 1028, 2376, 2496, 2766 |
| AdeI | CACNNNGTG | 2 cut(s) | 2051, 2081 |
| AfaI | GTAC | 5 cut(s) | 497, 1082, 2002, 2650, 2748 |
| AflII | CTTAAG | 1 cut(s) | 860 |
| AflIII | ACRYGT | 1 cut(s) | 2773 |
| AjnI | CCWGG | 6 cut(s) | 280, 1285, 1554, 2047, 2077, 2107 |
| Alw21I | GWGCWC | 3 cut(s) | 2151, 2158, 2427 |
| Alw26I | GTCTC | 3 cut(s) | 953, 1349, 1942 |
| Alw44I | GTGCAC | 1 cut(s) | 2147 |
| AlwI | GGATC | 4 cut(s) | 1234, 1716, 1898, 2558 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 739, 962, 2185 |
| Ama87I | CYCGRG | 1 cut(s) | 491 |
| Aor13HI | TCCGGA | 2 cut(s) | 1119, 1439 |
| AoxI | GGCC | 9 cut(s) | 13, 730, 1197, 1722, 1967, 2053, 2448, 2471, 2926 |
| ApaLI | GTGCAC | 1 cut(s) | 2147 |
| ApoI | RAATTY | 4 cut(s) | 76, 317, 2688, 2828 |
| AseI | ATTAAT | 1 cut(s) | 242 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1041, 1055, 1677, 2909 |
| AspA2I | CCTAGG | 1 cut(s) | 1955 |
| AspLEI | GCGC | 2 cut(s) | 438, 1236 |
| AspS9I | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2054, 2084, 2448, 2804, 2926, 2963 |
| AsuC2I | CCSGG | 2 cut(s) | 263, 1452 |
| AsuHPI | GGTGA | 7 cut(s) | 299, 494, 1438, 1617, 1796, 2150, 2342 |
| AsuII | TTCGAA | 1 cut(s) | 2913 |
| AvaI | CYCGRG | 1 cut(s) | 491 |
| AvaII | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2084, 2804, 2963 |
| AvrII | CCTAGG | 1 cut(s) | 1955 |
| BaeGI | GKGCMC | 3 cut(s) | 1993, 2129, 2151 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1327, 1360 |
| BanI | GGYRCC | 2 cut(s) | 1960, 1988 |
| BanII | GRGCYC | 3 cut(s) | 268, 1181, 2427 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 294, 326, 471, 503 |
| BauI | CACGAG | 2 cut(s) | 267, 1155 |
| BbsI | GAAGAC | 3 cut(s) | 153, 1034, 1605 |
| Bbv12I | GWGCWC | 3 cut(s) | 2151, 2158, 2427 |
| BccI | CCATC | 4 cut(s) | 188, 1285, 1514, 1543 |
| BceAI | ACGGC | 3 cut(s) | 446, 2435, 2913 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1875, 1909 |
| BciT130I | CCWGG | 6 cut(s) | 282, 1287, 1556, 2049, 2079, 2109 |
| BciVI | GTATCC | 3 cut(s) | 1240, 2019, 2203 |
| BcnI | CCSGG | 2 cut(s) | 263, 1452 |
| BcoDI | GTCTC | 3 cut(s) | 953, 1349, 1942 |
| BfaI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1956, 2247, 2414 |
| BfmI | CTRYAG | 1 cut(s) | 599 |
| BfrI | CTTAAG | 1 cut(s) | 860 |
| BfuAI | ACCTGC | 1 cut(s) | 592 |
| BfuI | GTATCC | 3 cut(s) | 1240, 2019, 2203 |
| BglII | AGATCT | 1 cut(s) | 325 |
| BlnI | CCTAGG | 1 cut(s) | 1955 |
| BlpI | GCTNAGC | 1 cut(s) | 1758 |
| BmcAI | AGTACT | 1 cut(s) | 497 |
| Bme1390I | CCNGG | 8 cut(s) | 263, 282, 1287, 1452, 1556, 2049, 2079, 2109 |
| Bme18I | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2084, 2804, 2963 |
| BmeT110I | CYCGRG | 1 cut(s) | 491 |
| BmgT120I | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2054, 2084, 2448, 2804, 2926, 2963 |
| BmiI | GGNNCC | 5 cut(s) | 1485, 1962, 1990, 2817, 2927 |
| BmrFI | CCNGG | 8 cut(s) | 263, 282, 1287, 1452, 1556, 2049, 2079, 2109 |
| BmsI | GCATC | 5 cut(s) | 703, 2479, 2663, 2782, 2881 |
| BpiI | GAAGAC | 3 cut(s) | 153, 1034, 1605 |
| BpmI | CTGGAG | 4 cut(s) | 683, 2004, 2736, 2901 |
| Bpu10I | CCTNAGC | 4 cut(s) | 636, 1505, 2160, 2921 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1758 |
| Bpu14I | TTCGAA | 1 cut(s) | 2913 |
| BpuEI | CTTGAG | 7 cut(s) | 533, 1122, 1126, 1893, 2002, 2310, 2441 |
| BpuMI | CCSGG | 2 cut(s) | 263, 1452 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1435 |
| BsaI | GGTCTC | 1 cut(s) | 1942 |
| BsaJI | CCNNGG | 4 cut(s) | 1478, 1955, 1964, 2120 |
| BsaWI | WCCGGW | 3 cut(s) | 1119, 1423, 1439 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1996, 2026 |
| Bse1I | ACTGG | 5 cut(s) | 733, 1329, 1494, 2414, 2693 |
| Bse3DI | GCAATG | 2 cut(s) | 2606, 2802 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1435 |
| BseAI | TCCGGA | 2 cut(s) | 1119, 1439 |
| BseBI | CCWGG | 6 cut(s) | 282, 1287, 1556, 2049, 2079, 2109 |
| BseDI | CCNNGG | 4 cut(s) | 1478, 1955, 1964, 2120 |
| BseGI | GGATG | 3 cut(s) | 199, 229, 2494 |
| BseJI | GATNNNNATC | 1 cut(s) | 1435 |
| BseMI | GCAATG | 2 cut(s) | 2606, 2802 |
| BseMII | CTCAG | 6 cut(s) | 650, 1166, 1360, 1749, 2151, 2799 |
| BseNI | ACTGG | 5 cut(s) | 733, 1329, 1494, 2414, 2693 |
| BseRI | GAGGAG | 7 cut(s) | 227, 230, 233, 1563, 2031, 2058, 2091 |
| BseSI | GKGCMC | 3 cut(s) | 1993, 2129, 2151 |
| BsgI | GTGCAG | 1 cut(s) | 2385 |
| Bsh1236I | CGCG | 2 cut(s) | 1236, 2775 |
| Bsh1285I | CGRYCG | 1 cut(s) | 93 |
| BshFI | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 1969, 2055, 2450, 2473, 2928 |
| BshNI | GGYRCC | 2 cut(s) | 1960, 1988 |
| BsiEI | CGRYCG | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2151, 2158, 2427 |
| BsiHKCI | CYCGRG | 1 cut(s) | 491 |
| BsiSI | CCGG | 5 cut(s) | 262, 1120, 1424, 1440, 1451 |
| BslFI | GGGAC | 2 cut(s) | 1497, 2669 |
| BsmAI | GTCTC | 3 cut(s) | 953, 1349, 1942 |
| BsmFI | GGGAC | 2 cut(s) | 1497, 2669 |
| BsmI | GAATGC | 3 cut(s) | 922, 1516, 2909 |
| BsnI | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 1969, 2055, 2450, 2473, 2928 |
| Bso31I | GGTCTC | 1 cut(s) | 1942 |
| BsoBI | CYCGRG | 1 cut(s) | 491 |
| Bsp119I | TTCGAA | 1 cut(s) | 2913 |
| Bsp1286I | GDGCHC | 7 cut(s) | 268, 1181, 1993, 2129, 2151, 2158, 2427 |
| Bsp13I | TCCGGA | 2 cut(s) | 1119, 1439 |
| Bsp1407I | TGTACA | 1 cut(s) | 2746 |
| Bsp143I | GATC | 8 cut(s) | 325, 1159, 1226, 1430, 1708, 1903, 2563, 2730 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1758 |
| BspACI | CCGC | 5 cut(s) | 93, 1236, 2060, 2505, 2937 |
| BspANI | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 1969, 2055, 2450, 2473, 2928 |
| BspCNI | CTCAG | 6 cut(s) | 649, 1167, 1359, 1750, 2152, 2800 |
| BspEI | TCCGGA | 2 cut(s) | 1119, 1439 |
| BspFNI | CGCG | 2 cut(s) | 1236, 2775 |
| BspLI | GGNNCC | 5 cut(s) | 1485, 1962, 1990, 2817, 2927 |
| BspMAI | CTGCAG | 1 cut(s) | 603 |
| BspMI | ACCTGC | 1 cut(s) | 592 |
| BspPI | GGATC | 4 cut(s) | 1234, 1716, 1898, 2558 |
| BspQI | GCTCTTC | 4 cut(s) | 147, 1065, 2415, 2910 |
| BspT104I | TTCGAA | 1 cut(s) | 2913 |
| BspT107I | GGYRCC | 2 cut(s) | 1960, 1988 |
| BspTI | CTTAAG | 1 cut(s) | 860 |
| BspTNI | GGTCTC | 1 cut(s) | 1942 |
| BsrDI | GCAATG | 2 cut(s) | 2606, 2802 |
| BsrGI | TGTACA | 1 cut(s) | 2746 |
| BsrI | ACTGG | 5 cut(s) | 733, 1329, 1494, 2414, 2693 |
| BssECI | CCNNGG | 4 cut(s) | 1478, 1955, 1964, 2120 |
| BssMI | GATC | 8 cut(s) | 325, 1159, 1226, 1430, 1708, 1903, 2563, 2730 |
| BssSI | CACGAG | 2 cut(s) | 267, 1155 |
| BssT1I | CCWWGG | 3 cut(s) | 1478, 1955, 2120 |
| Bst2BI | CACGAG | 2 cut(s) | 267, 1155 |
| Bst2UI | CCWGG | 6 cut(s) | 282, 1287, 1556, 2049, 2079, 2109 |
| Bst4CI | ACNGT | 7 cut(s) | 562, 741, 903, 1322, 1340, 2153, 2751 |
| BstAFI | CTTAAG | 1 cut(s) | 860 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 44, 413, 2848 |
| BstAUI | TGTACA | 1 cut(s) | 2746 |
| BstBI | TTCGAA | 1 cut(s) | 2913 |
| BstC8I | GCNNGC | 8 cut(s) | 575, 1008, 1102, 1238, 1516, 1764, 2117, 2849 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1729, 1874, 2046, 2106 |
| BstF5I | GGATG | 3 cut(s) | 199, 229, 2494 |
| BstFNI | CGCG | 2 cut(s) | 1236, 2775 |
| BstHHI | GCGC | 2 cut(s) | 438, 1236 |
| BstKTI | GATC | 8 cut(s) | 328, 1162, 1229, 1433, 1711, 1906, 2566, 2733 |
| BstMAI | GTCTC | 3 cut(s) | 953, 1349, 1942 |
| BstMBI | GATC | 8 cut(s) | 325, 1159, 1226, 1430, 1708, 1903, 2563, 2730 |
| BstMCI | CGRYCG | 1 cut(s) | 93 |
| BstNI | CCWGG | 6 cut(s) | 282, 1287, 1556, 2049, 2079, 2109 |
| BstNSI | RCATGY | 3 cut(s) | 577, 1010, 1104 |
| BstSCI | CCNGG | 8 cut(s) | 261, 280, 1285, 1450, 1554, 2047, 2077, 2107 |
| BstSFI | CTRYAG | 1 cut(s) | 599 |
| BstSLI | GKGCMC | 3 cut(s) | 1993, 2129, 2151 |
| BstUI | CGCG | 2 cut(s) | 1236, 2775 |
| BstV2I | GAAGAC | 3 cut(s) | 153, 1034, 1605 |
| BstX2I | RGATCY | 1 cut(s) | 325 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2700 |
| BstYI | RGATCY | 1 cut(s) | 325 |
| BsuI | GTATCC | 3 cut(s) | 1240, 2019, 2203 |
| BsuRI | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 1969, 2055, 2450, 2473, 2928 |
| BtgZI | GCGATG | 1 cut(s) | 1533 |
| BtsCI | GGATG | 3 cut(s) | 199, 229, 2494 |
| BtsI | GCAGTG | 2 cut(s) | 256, 795 |
| BtsIMutI | CAGTG | 6 cut(s) | 256, 528, 567, 795, 1066, 1487 |
| BveI | ACCTGC | 1 cut(s) | 592 |
| Cac8I | GCNNGC | 8 cut(s) | 575, 1008, 1102, 1238, 1516, 1764, 2117, 2849 |
| CaiI | CAGNNNCTG | 3 cut(s) | 739, 962, 2185 |
| CfoI | GCGC | 2 cut(s) | 438, 1236 |
| Cfr13I | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2054, 2084, 2448, 2804, 2926, 2963 |
| CsiI | ACCWGGT | 3 cut(s) | 280, 2047, 2077 |
| Csp6I | GTAC | 5 cut(s) | 496, 1081, 2001, 2649, 2747 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 918, 953, 2539, 2574 |
| CviQI | GTAC | 5 cut(s) | 496, 1081, 2001, 2649, 2747 |
| DpnI | GATC | 8 cut(s) | 327, 1161, 1228, 1432, 1710, 1905, 2565, 2732 |
| DpnII | GATC | 8 cut(s) | 325, 1159, 1226, 1430, 1708, 1903, 2563, 2730 |
| DraIII | CACNNNGTG | 2 cut(s) | 2051, 2081 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2091 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2091 |
| EaeI | YGGCCR | 1 cut(s) | 1967 |
| Ecl136II | GAGCTC | 1 cut(s) | 2425 |
| Eco130I | CCWWGG | 3 cut(s) | 1478, 1955, 2120 |
| Eco147I | AGGCCT | 1 cut(s) | 15 |
| Eco24I | GRGCYC | 3 cut(s) | 268, 1181, 2427 |
| Eco31I | GGTCTC | 1 cut(s) | 1942 |
| Eco32I | GATATC | 2 cut(s) | 526, 1149 |
| Eco47I | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2084, 2804, 2963 |
| Eco53kI | GAGCTC | 1 cut(s) | 2425 |
| Eco57I | CTGAAG | 5 cut(s) | 87, 1028, 2376, 2496, 2766 |
| Eco88I | CYCGRG | 1 cut(s) | 491 |
| EcoICRI | GAGCTC | 1 cut(s) | 2425 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1729, 1874, 2046, 2106 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1018 |
| EcoRI | GAATTC | 2 cut(s) | 76, 2688 |
| EcoRII | CCWGG | 6 cut(s) | 280, 1285, 1554, 2047, 2077, 2107 |
| EcoRV | GATATC | 2 cut(s) | 526, 1149 |
| EcoT14I | CCWWGG | 3 cut(s) | 1478, 1955, 2120 |
| EcoT38I | GRGCYC | 3 cut(s) | 268, 1181, 2427 |
| ErhI | CCWWGG | 3 cut(s) | 1478, 1955, 2120 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 144, 176, 459, 491, 1709, 1741 |
| FaqI | GGGAC | 2 cut(s) | 1497, 2669 |
| FauI | CCCGC | 1 cut(s) | 1229 |
| FokI | GGATG | 3 cut(s) | 206, 236, 2501 |
| FriOI | GRGCYC | 3 cut(s) | 268, 1181, 2427 |
| FspBI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1956, 2247, 2414 |
| FspI | TGCGCA | 1 cut(s) | 437 |
| GlaI | GCGC | 2 cut(s) | 437, 1235 |
| GsuI | CTGGAG | 4 cut(s) | 683, 2004, 2736, 2901 |
| HaeIII | GGCC | 9 cut(s) | 15, 732, 1199, 1724, 1969, 2055, 2450, 2473, 2928 |
| HapII | CCGG | 5 cut(s) | 262, 1120, 1424, 1440, 1451 |
| HhaI | GCGC | 2 cut(s) | 438, 1236 |
| Hin6I | GCGC | 2 cut(s) | 436, 1234 |
| HinP1I | GCGC | 2 cut(s) | 436, 1234 |
| HincII | GTYRAC | 1 cut(s) | 364 |
| HindII | GTYRAC | 1 cut(s) | 364 |
| HindIII | AAGCTT | 3 cut(s) | 617, 1373, 2113 |
| HinfI | GANTC | 8 cut(s) | 518, 703, 800, 926, 1171, 1403, 1568, 2711 |
| HpaI | GTTAAC | 1 cut(s) | 364 |
| HpaII | CCGG | 5 cut(s) | 262, 1120, 1424, 1440, 1451 |
| HphI | GGTGA | 7 cut(s) | 299, 494, 1438, 1617, 1796, 2150, 2342 |
| Hpy166II | GTNNAC | 9 cut(s) | 364, 485, 767, 1081, 2084, 2096, 2149, 2407, 2804 |
| Hpy188I | TCNGA | 9 cut(s) | 106, 135, 523, 805, 1047, 1131, 1176, 1231, 2785 |
| Hpy8I | GTNNAC | 9 cut(s) | 364, 485, 767, 1081, 2084, 2096, 2149, 2407, 2804 |
| HpyCH4III | ACNGT | 7 cut(s) | 562, 741, 903, 1322, 1340, 2153, 2751 |
| HpyCH4IV | ACGT | 2 cut(s) | 2194, 2972 |
| HpySE526I | ACGT | 2 cut(s) | 2194, 2972 |
| HspAI | GCGC | 2 cut(s) | 436, 1234 |
| Kpn2I | TCCGGA | 2 cut(s) | 1119, 1439 |
| KspAI | GTTAAC | 1 cut(s) | 364 |
| Kzo9I | GATC | 8 cut(s) | 325, 1159, 1226, 1430, 1708, 1903, 2563, 2730 |
| LguI | GCTCTTC | 4 cut(s) | 147, 1065, 2415, 2910 |
| LmnI | GCTCC | 6 cut(s) | 641, 658, 856, 2161, 2256, 2536 |
| LweI | GCATC | 5 cut(s) | 703, 2479, 2663, 2782, 2881 |
| MabI | ACCWGGT | 3 cut(s) | 280, 2047, 2077 |
| MaeI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1956, 2247, 2414 |
| MaeII | ACGT | 2 cut(s) | 2194, 2972 |
| MaeIII | GTNAC | 3 cut(s) | 735, 1185, 2330 |
| MalI | GATC | 8 cut(s) | 327, 1161, 1228, 1432, 1710, 1905, 2565, 2732 |
| MboI | GATC | 8 cut(s) | 325, 1159, 1226, 1430, 1708, 1903, 2563, 2730 |
| MfeI | CAATTG | 1 cut(s) | 33 |
| MflI | RGATCY | 1 cut(s) | 325 |
| MhlI | GDGCHC | 7 cut(s) | 268, 1181, 1993, 2129, 2151, 2158, 2427 |
| MluI | ACGCGT | 1 cut(s) | 2773 |
| MlyI | GAGTC | 1 cut(s) | 1562 |
| MmeI | TCCRAC | 2 cut(s) | 1194, 2514 |
| MroI | TCCGGA | 2 cut(s) | 1119, 1439 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1041, 1055, 1677, 2909 |
| MslI | CAYNNNNRTG | 2 cut(s) | 135, 1011 |
| MspA1I | CMGCKG | 1 cut(s) | 2937 |
| MspCI | CTTAAG | 1 cut(s) | 860 |
| MspI | CCGG | 5 cut(s) | 262, 1120, 1424, 1440, 1451 |
| MspR9I | CCNGG | 8 cut(s) | 263, 282, 1287, 1452, 1556, 2049, 2079, 2109 |
| MunI | CAATTG | 1 cut(s) | 33 |
| Mva1269I | GAATGC | 3 cut(s) | 922, 1516, 2909 |
| MvaI | CCWGG | 6 cut(s) | 282, 1287, 1556, 2049, 2079, 2109 |
| MvnI | CGCG | 2 cut(s) | 1236, 2775 |
| NciI | CCSGG | 2 cut(s) | 263, 1452 |
| NdeII | GATC | 8 cut(s) | 325, 1159, 1226, 1430, 1708, 1903, 2563, 2730 |
| NlaIV | GGNNCC | 5 cut(s) | 1485, 1962, 1990, 2817, 2927 |
| NmeAIII | GCCGAG | 1 cut(s) | 1945 |
| NmuCI | GTSAC | 2 cut(s) | 1185, 2330 |
| NsbI | TGCGCA | 1 cut(s) | 437 |
| NspI | RCATGY | 3 cut(s) | 577, 1010, 1104 |
| NspV | TTCGAA | 1 cut(s) | 2913 |
| PaeI | GCATGC | 3 cut(s) | 577, 1010, 1104 |
| PaeR7I | CTCGAG | 1 cut(s) | 491 |
| PceI | AGGCCT | 1 cut(s) | 15 |
| PciSI | GCTCTTC | 4 cut(s) | 147, 1065, 2415, 2910 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2619 |
| PctI | GAATGC | 3 cut(s) | 922, 1516, 2909 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1041, 1055, 1677, 2909 |
| PfeI | GAWTC | 7 cut(s) | 518, 703, 800, 926, 1171, 1403, 2711 |
| PflFI | GACNNNGTC | 1 cut(s) | 2336 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2051, 2078, 2081 |
| PleI | GAGTC | 1 cut(s) | 1562 |
| PpsI | GAGTC | 1 cut(s) | 1562 |
| PpuMI | RGGWCCY | 1 cut(s) | 1018 |
| PshBI | ATTAAT | 1 cut(s) | 242 |
| PsiI | TTATAA | 1 cut(s) | 1874 |
| Psp124BI | GAGCTC | 1 cut(s) | 2427 |
| Psp5II | RGGWCCY | 1 cut(s) | 1018 |
| Psp6I | CCWGG | 6 cut(s) | 280, 1285, 1554, 2047, 2077, 2107 |
| PspGI | CCWGG | 6 cut(s) | 280, 1285, 1554, 2047, 2077, 2107 |
| PspN4I | GGNNCC | 5 cut(s) | 1485, 1962, 1990, 2817, 2927 |
| PspPI | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2054, 2084, 2448, 2804, 2926, 2963 |
| PspPPI | RGGWCCY | 1 cut(s) | 1018 |
| PspXI | VCTCGAGB | 1 cut(s) | 491 |
| PstI | CTGCAG | 1 cut(s) | 603 |
| PstNI | CAGNNNCTG | 3 cut(s) | 739, 962, 2185 |
| PsuI | RGATCY | 1 cut(s) | 325 |
| PsyI | GACNNNGTC | 1 cut(s) | 2336 |
| RsaI | GTAC | 5 cut(s) | 497, 1082, 2002, 2650, 2748 |
| RsaNI | GTAC | 5 cut(s) | 496, 1081, 2001, 2649, 2747 |
| RseI | CAYNNNNRTG | 2 cut(s) | 135, 1011 |
| SacI | GAGCTC | 1 cut(s) | 2427 |
| SapI | GCTCTTC | 4 cut(s) | 147, 1065, 2415, 2910 |
| Sau3AI | GATC | 8 cut(s) | 325, 1159, 1226, 1430, 1708, 1903, 2563, 2730 |
| Sau96I | GGNCC | 9 cut(s) | 1018, 1484, 1552, 2054, 2084, 2448, 2804, 2926, 2963 |
| ScaI | AGTACT | 1 cut(s) | 497 |
| SchI | GAGTC | 1 cut(s) | 1562 |
| ScrFI | CCNGG | 8 cut(s) | 263, 282, 1287, 1452, 1556, 2049, 2079, 2109 |
| SduI | GDGCHC | 7 cut(s) | 268, 1181, 1993, 2129, 2151, 2158, 2427 |
| SexAI | ACCWGGT | 3 cut(s) | 280, 2047, 2077 |
| SfaNI | GCATC | 5 cut(s) | 703, 2479, 2663, 2782, 2881 |
| SfcI | CTRYAG | 1 cut(s) | 599 |
| Sfr274I | CTCGAG | 1 cut(s) | 491 |
| SfuI | TTCGAA | 1 cut(s) | 2913 |
| SinI | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2084, 2804, 2963 |
| SlaI | CTCGAG | 1 cut(s) | 491 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 135, 1011 |
| SmlI | CTYRAG | 9 cut(s) | 491, 548, 860, 1105, 1137, 1908, 2017, 2325, 2456 |
| SmoI | CTYRAG | 9 cut(s) | 491, 548, 860, 1105, 1137, 1908, 2017, 2325, 2456 |
| SphI | GCATGC | 3 cut(s) | 577, 1010, 1104 |
| SseBI | AGGCCT | 1 cut(s) | 15 |
| SsiI | CCGC | 5 cut(s) | 93, 1236, 2060, 2505, 2937 |
| SspI | AATATT | 1 cut(s) | 583 |
| SspMI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1956, 2247, 2414 |
| SstI | GAGCTC | 1 cut(s) | 2427 |
| StuI | AGGCCT | 1 cut(s) | 15 |
| StyD4I | CCNGG | 8 cut(s) | 261, 280, 1285, 1450, 1554, 2047, 2077, 2107 |
| StyI | CCWWGG | 3 cut(s) | 1478, 1955, 2120 |
| TaaI | ACNGT | 7 cut(s) | 562, 741, 903, 1322, 1340, 2153, 2751 |
| TaiI | ACGT | 2 cut(s) | 2197, 2975 |
| TaqI | TCGA | 9 cut(s) | 89, 492, 888, 1333, 1474, 2237, 2613, 2622, 2913 |
| TatI | WGTACW | 2 cut(s) | 495, 2746 |
| TauI | GCSGC | 1 cut(s) | 2507 |
| TfiI | GAWTC | 7 cut(s) | 518, 703, 800, 926, 1171, 1403, 2711 |
| TscAI | CASTG | 6 cut(s) | 256, 535, 567, 795, 1066, 1494 |
| TseFI | GTSAC | 2 cut(s) | 1185, 2330 |
| Tsp45I | GTSAC | 2 cut(s) | 1185, 2330 |
| TspGWI | ACGGA | 1 cut(s) | 2852 |
| TspRI | CASTG | 6 cut(s) | 256, 535, 567, 795, 1066, 1494 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2336 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2051, 2078, 2081 |
| Vha464I | CTTAAG | 1 cut(s) | 860 |
| VneI | GTGCAC | 1 cut(s) | 2147 |
| VpaK11BI | GGWCC | 6 cut(s) | 1018, 1484, 1552, 2084, 2804, 2963 |
| VspI | ATTAAT | 1 cut(s) | 242 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1729, 1874, 2046, 2106 |
| XapI | RAATTY | 4 cut(s) | 76, 317, 2688, 2828 |
| XbaI | TCTAGA | 1 cut(s) | 1681 |
| XceI | RCATGY | 3 cut(s) | 577, 1010, 1104 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 658 |
| XhoI | CTCGAG | 1 cut(s) | 491 |
| XmaJI | CCTAGG | 1 cut(s) | 1955 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1041, 1055, 1677, 2909 |
| XspI | CTAG | 9 cut(s) | 96, 1076, 1359, 1617, 1682, 1818, 1956, 2247, 2414 |
| ZrmI | AGTACT | 1 cut(s) | 497 |