MD13G1053700.v1.1

Phytosulfokine precursor protein (PSK)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0018026
Physical Location & Seq
Forward (+)
3785657 .. 3786239
583 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1053700.v1.1.491

Sequence Viewer

Length: 306 bp
ATGGCGAATGCCCAGATTTTGTTCTTCCTTTTGGCCTTTTCTCTATTGTATATTTCAAGAGCGGAAGCCAGAGAGATCCCAGCTGCCTCCACGTTGCCTGTATCTGGTCCAAATGAATCATTATCATCTTCTGCTGCTGCTTCTCCTTCTTATATGGCCATCAGATCTTCATCACTTGAGGAAGGAAGCCTGGATGGTGAGGCTGATTGCAAGGGATTAAACAGTGAAGAGTGTTTGATGAGAAGGTCCATGGTTGCTCACACAGACTATATCTACACACAAGACATAAGTCCCACTGGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

102

Amino Acids

10.78

Weight (kDa)

4.48

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 44 - 95 1.4e-13 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018026)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28750 FvH4_6g32510
malus_domestica MD13G1053700.v1.1
prunus_persica Prupe.1G298400_v2.0.a1
rosa_multiflora Rmu_sc0001464.1_g000019
rosa_roxburghii Rroxscaffold_5G00377940
rosa_rugosa Rorug04G0296900
rosa_samantha Rh4AG351200 Rh4BG360200 Rh4CG374500 Rh4DG354500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwI GGATC 1 cut(s) 70
AoxI GGCC 2 cut(s) 33, 156
ApeKI GCWGC 3 cut(s) 83, 134, 137
AspS9I GGNCC 3 cut(s) 107, 246, 299
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 3 cut(s) 107, 246, 299
BalI TGGCCA 1 cut(s) 158
BbvI GCAGC 3 cut(s) 70, 121, 124
BccI CCATC 2 cut(s) 167, 188
BciT130I CCWGG 1 cut(s) 191
BglII AGATCT 1 cut(s) 164
BisI GCNGC 3 cut(s) 84, 135, 138
BlsI GCNGC 3 cut(s) 85, 136, 139
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 3 cut(s) 107, 246, 299
BmgT120I GGNCC 3 cut(s) 107, 246, 299
BmrFI CCNGG 1 cut(s) 191
BoxI GACNNNNGTC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 169
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 70, 121, 124
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 2 cut(s) 35, 158
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 2 cut(s) 35, 158
Bsp143I GATC 2 cut(s) 75, 164
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 35, 158
BspPI GGATC 1 cut(s) 70
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 2 cut(s) 75, 164
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 78, 167
BstMBI GATC 2 cut(s) 75, 164
BstNI CCWGG 1 cut(s) 191
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 70, 121, 124
BstX2I RGATCY 2 cut(s) 75, 164
BstYI RGATCY 2 cut(s) 75, 164
BsuRI GGCC 2 cut(s) 35, 158
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 229, 294
Cfr13I GGNCC 3 cut(s) 107, 246, 299
CviAII CATG 2 cut(s) 250, 303
CviJI RGCY 6 cut(s) 35, 68, 83, 158, 189, 203
CviKI_1 RGCY 6 cut(s) 35, 68, 83, 158, 189, 203
DpnI GATC 2 cut(s) 77, 166
DpnII GATC 2 cut(s) 75, 164
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 3 cut(s) 107, 246, 299
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 2 cut(s) 253, 306
FaiI YATR 7 cut(s) 51, 153, 155, 251, 270, 287, 304
FaqI GGGAC 1 cut(s) 276
FatI CATG 2 cut(s) 249, 302
Fnu4HI GCNGC 3 cut(s) 84, 135, 138
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 84, 135, 138
GluI GCNGC 3 cut(s) 84, 135, 138
GsaI CCCAGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 35, 158
Hin1II CATG 2 cut(s) 253, 306
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 156, 176, 237
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 2 cut(s) 253, 306
Kzo9I GATC 2 cut(s) 75, 164
LpnPI CCDG 8 cut(s) 26, 82, 90, 93, 111, 176, 203, 282
Lsp1109I GCAGC 3 cut(s) 70, 121, 124
MaeII ACGT 1 cut(s) 92
MalI GATC 2 cut(s) 77, 166
MbiI CCGCTC 1 cut(s) 62
MboI GATC 2 cut(s) 75, 164
MboII GAAGA 4 cut(s) 16, 120, 159, 239
MflI RGATCY 2 cut(s) 75, 164
MlsI TGGCCA 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 158
MnlI CCTC 3 cut(s) 97, 172, 193
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 249
NdeII GATC 2 cut(s) 75, 164
NlaIII CATG 2 cut(s) 253, 306
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 85, 136, 139
PshAI GACNNNNGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 189
PspPI GGNCC 3 cut(s) 107, 246, 299
PsuI RGATCY 2 cut(s) 75, 164
PvuII CAGCTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 3 cut(s) 84, 135, 138
Sau3AI GATC 2 cut(s) 75, 164
Sau96I GGNCC 3 cut(s) 107, 246, 299
ScrFI CCNGG 1 cut(s) 191
SetI ASST 3 cut(s) 85, 95, 248
SinI GGWCC 3 cut(s) 107, 246, 299
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SsiI CCGC 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 95
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 2 cut(s) 229, 301
TseI GCWGC 3 cut(s) 83, 134, 137
TspDTI ATGAA 2 cut(s) 129, 159
TspRI CASTG 2 cut(s) 229, 301
VpaK11BI GGWCC 3 cut(s) 107, 246, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.