MD13G1061600.v1.1

Cell division control protein 48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011382
Physical Location & Seq
Reverse (-)
4320024 .. 4323886
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1061600.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGAGAGCCGAAGACGCCATAGCCGGAAACGCCGAAGATCTCATGAGCTCTCAGAGAACTCATCGTCTACCCTCTCCTCTACTCTCGTCAAGCCCAAAAGCTCGTGGACTCGGGGTTTGCTTCTCTACGGCCCTCCCAGCACCGGAAAGACAAGCTTGGTAAGAGCAGTGGTCAGGGAATGTGGTGCGCATTTGATTGTCATTAGTCCACATTCTGTACACAAAGCACATGCCAGAGAAGGTGAGAAATTTTTACGGGAGGCTTTTGCAGAGGCTTCATCGCTTGCATTGTCAAGCAAGCCATCTGTTATCTTTATAGATGAAATAGATGCACTCTGTCCTCGCCGTGATTCTAGAGCAAGATGTTCGTATCTCAACTCTTTACGCTGCTGGACTCCGCCAAGATGTCCTCAGCATCCGTACCACAGGTTGTGGTTGTTGCATCCACTAACAGCTGAAGCAATTGATCCAGCACTCAGAAGGTCTGGGCGTTTTGATGTTGAAATTGAAGTTACTACGCCTGCTGAAGAAGAACGCTTTCAAATTCTCAAGCTCTACACAAGAAAAGTTCCATTGGATACCAACGTTGATCTACATGGCATAGCTGCATCTTGCAATGGATTTGTTGGGGCGGACCTGGAAGCATTATGTCGTGAGGCTGCTATGTCTGCAATTAAAAGACATCCAGATGCAAATAAAGATGCTGGTTTGTTTAGCTTAACAATAGAAGACTGGAAGCATGCAAGGACTGTGGTTGGTCCAAGTATAACAAGAGGTGTCGCAGTGGAAATTCCCAAGGTGACTTGGGAAGATAAGGGAGGGTTGAACGATTTAAAGAAAAAGCTCCAGCAAGCTGTTGAGCTGGGAATCTCACCCATGTATGGAATTCTTCTTTATGGTCCTCCGGGATGCTCGAAAACCACACTTGCTAAAGCCGCTGGACATGCTGCCCAAGCTTCATTTTTTTCTTTGAGTGGTGCAGAATTGTTTTCAATGTACGTTGGAGAGGGTGAAGCTTTGCTGTGCAATACCTTTTGGAGAGCTCACCTTGCTGCACCCAGCTTAATACTCTTTGATGAGGCGGATGTTGTTGCTGCCAAAAGAGGTGGGAGTTCAAGCAACAGCAGTATTGTTGAACAAATGGGTCTTCGTATCACCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA

Protein Analysis

388

Amino Acids

42.49

Weight (kDa)

9.18

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 40 - 172 1.4e-23 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 195 - 231 5.9e-14 AAA+ lid domain
AAA PF00004 296 - 380 8.6e-19 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03670 AT2G03670
fragaria_vesca FvH4_4g29870 FvH4_4g29870
malus_domestica MD13G1061600.v1.1 MD16G1060100.v1.1
prunus_persica Prupe.1G288400_v2.0.a1 Prupe.1G288400_v2.0.a1
pyrus_communis pycom16g05230
rosa_chinensis RchiOBHm_Chr4g0438121
rosa_laevigata RLG00000006386
rosa_multiflora Rmu_co8506135.1_g000001
rosa_roxburghii Rroxscaffold_5G00379260
rosa_rugosa Rorug04G0307200
rosa_samantha Rh4AG358700 Rh4BG369600 Rh4CG383700 Rh4DG364500
rosa_wichuraiana Rw0G006320 Rw0G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 189
AccI GTMKAC 1 cut(s) 68
AciI CCGC 4 cut(s) 398, 632, 936, 1082
AclI AACGTT 1 cut(s) 585
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 4 cut(s) 248, 543, 789, 885
AcuI CTGAAG 2 cut(s) 477, 546
AcyI GRCGYC 1 cut(s) 16
AfaI GTAC 3 cut(s) 219, 422, 998
AfiI CCNNNNNNNGG 2 cut(s) 143, 881
AgsI TTSAA 7 cut(s) 503, 509, 542, 826, 993, 1116, 1136
AjnI CCWGG 1 cut(s) 636
Alw21I GWGCWC 2 cut(s) 51, 1045
AlwI GGATC 1 cut(s) 461
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 6 cut(s) 387, 605, 659, 947, 1052, 1094
ApoI RAATTY 4 cut(s) 248, 543, 789, 885
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 4 cut(s) 131, 634, 758, 899
AsuC2I CCSGG 1 cut(s) 906
AsuHPI GGTGA 6 cut(s) 254, 811, 864, 1022, 1037, 1147
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 3 cut(s) 634, 758, 899
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
BanII GRGCYC 2 cut(s) 51, 1045
BauI CACGAG 1 cut(s) 103
BbsI GAAGAC 3 cut(s) 19, 735, 1139
Bbv12I GWGCWC 2 cut(s) 51, 1045
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 6 cut(s) 374, 592, 646, 934, 1039, 1081
BccI CCATC 1 cut(s) 310
BceAI ACGGC 2 cut(s) 145, 330
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 1 cut(s) 638
BciVI GTATCC 1 cut(s) 571
BcnI CCSGG 1 cut(s) 906
BfaI CTAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 571
BglII AGATCT 1 cut(s) 38
BisI GCNGC 7 cut(s) 388, 606, 660, 936, 948, 1053, 1095
BlsI GCNGC 7 cut(s) 389, 607, 661, 937, 949, 1054, 1096
Bme1390I CCNGG 2 cut(s) 638, 906
Bme18I GGWCC 3 cut(s) 634, 758, 899
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 4 cut(s) 131, 634, 758, 899
BmrFI CCNGG 2 cut(s) 638, 906
BmsI GCATC 7 cut(s) 319, 424, 451, 617, 679, 691, 899
BpiI GAAGAC 3 cut(s) 19, 735, 1139
BpmI CTGGAG 1 cut(s) 830
Bpu10I CCTNAGC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 795
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 881
Bse1I ACTGG 1 cut(s) 737
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 638
BseDI CCNNGG 1 cut(s) 795
BseGI GGATG 5 cut(s) 415, 442, 682, 914, 1090
BseLI CCNNNNNNNGG 2 cut(s) 143, 881
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 3 cut(s) 66, 425, 490
BseNI ACTGG 1 cut(s) 737
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 6 cut(s) 374, 592, 646, 934, 1039, 1081
BseYI CCCAGC 3 cut(s) 137, 862, 1058
BsgI GTGCAG 2 cut(s) 999, 1038
BshFI GGCC 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 51, 1045
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 3 cut(s) 25, 144, 905
BslI CCNNNNNNNGG 2 cut(s) 143, 881
BsnI GGCC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 51, 1045
Bsp1407I TGTACA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 38, 466, 589
BspACI CCGC 4 cut(s) 398, 632, 936, 1082
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 3 cut(s) 65, 424, 489
BspHI TCATGA 1 cut(s) 43
BspPI GGATC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 622
BsrGI TGTACA 1 cut(s) 217
BsrI ACTGG 1 cut(s) 737
BssECI CCNNGG 1 cut(s) 795
BssMI GATC 3 cut(s) 38, 466, 589
BssNI GRCGYC 1 cut(s) 16
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 795
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 1 cut(s) 751
BstACI GRCGYC 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 217
BstC8I GCNNGC 5 cut(s) 285, 299, 522, 741, 852
BstDEI CTNAG 3 cut(s) 52, 411, 476
BstF5I GGATG 5 cut(s) 415, 442, 682, 914, 1090
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 3 cut(s) 41, 469, 592
BstMBI GATC 3 cut(s) 38, 466, 589
BstMWI GCNNNNNNNGC 8 cut(s) 15, 30, 138, 668, 935, 944, 953, 1049
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 3 cut(s) 233, 743, 947
BstSCI CCNGG 2 cut(s) 636, 904
BstV1I GCAGC 6 cut(s) 374, 592, 646, 934, 1039, 1081
BstV2I GAAGAC 3 cut(s) 19, 735, 1139
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 571
BsuRI GGCC 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 5 cut(s) 415, 442, 682, 914, 1090
BtsI GCAGTG 2 cut(s) 174, 789
BtsIMutI CAGTG 2 cut(s) 174, 789
Cac8I GCNNGC 5 cut(s) 285, 299, 522, 741, 852
CciI TCATGA 1 cut(s) 43
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 131, 634, 758, 899
CseI GACGC 1 cut(s) 24
Csp6I GTAC 3 cut(s) 218, 421, 997
CspCI CAANNNNNGTGG 4 cut(s) 732, 767, 1087, 1122
CviAII CATG 6 cut(s) 44, 230, 596, 740, 877, 944
CviQI GTAC 3 cut(s) 218, 421, 997
DdeI CTNAG 3 cut(s) 52, 411, 476
DpnI GATC 3 cut(s) 40, 468, 591
DpnII GATC 3 cut(s) 38, 466, 589
DraI TTTAAA 1 cut(s) 834
EciI GGCGGA 3 cut(s) 387, 647, 1097
Ecl136II GAGCTC 2 cut(s) 49, 1043
Eco130I CCWWGG 1 cut(s) 795
Eco24I GRGCYC 2 cut(s) 51, 1045
Eco47I GGWCC 3 cut(s) 634, 758, 899
Eco53kI GAGCTC 2 cut(s) 49, 1043
Eco57I CTGAAG 2 cut(s) 477, 546
Eco88I CYCGRG 1 cut(s) 111
EcoICRI GAGCTC 2 cut(s) 49, 1043
EcoRI GAATTC 1 cut(s) 885
EcoRII CCWGG 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 795
EcoT38I GRGCYC 2 cut(s) 51, 1045
ErhI CCWWGG 1 cut(s) 795
FaeI CATG 6 cut(s) 47, 233, 599, 743, 880, 947
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 6 cut(s) 43, 229, 595, 739, 876, 943
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 7 cut(s) 388, 606, 660, 936, 948, 1053, 1095
FokI GGATG 5 cut(s) 402, 429, 669, 921, 1097
FriOI GRGCYC 2 cut(s) 51, 1045
Fsp4HI GCNGC 7 cut(s) 388, 606, 660, 936, 948, 1053, 1095
FspAI RTGCGCAY 1 cut(s) 189
FspBI CTAG 1 cut(s) 354
FspI TGCGCA 1 cut(s) 189
GlaI GCGC 1 cut(s) 189
GluI GCNGC 7 cut(s) 388, 606, 660, 936, 948, 1053, 1095
GsaI CCCAGC 3 cut(s) 141, 866, 1062
GsuI CTGGAG 1 cut(s) 830
HaeIII GGCC 1 cut(s) 132
HapII CCGG 3 cut(s) 25, 144, 905
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 6 cut(s) 47, 233, 599, 743, 880, 947
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HindIII AAGCTT 3 cut(s) 154, 954, 1014
HinfI GANTC 4 cut(s) 109, 350, 394, 867
HpaII CCGG 3 cut(s) 25, 144, 905
HphI GGTGA 6 cut(s) 254, 811, 864, 1022, 1037, 1147
Hpy166II GTNNAC 4 cut(s) 69, 108, 209, 220
Hpy188I TCNGA 2 cut(s) 55, 479
Hpy188III TCNNGA 4 cut(s) 44, 354, 653, 686
Hpy8I GTNNAC 4 cut(s) 69, 108, 209, 220
HpyAV CCTTC 2 cut(s) 233, 474
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4IV ACGT 2 cut(s) 585, 999
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 30, 138, 668, 935, 944, 953, 1049
HpyF3I CTNAG 3 cut(s) 52, 411, 476
HpySE526I ACGT 2 cut(s) 585, 999
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 6 cut(s) 47, 233, 599, 743, 880, 947
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 3 cut(s) 38, 466, 589
LmnI GCTCC 1 cut(s) 849
Lsp1109I GCAGC 6 cut(s) 374, 592, 646, 934, 1039, 1081
LweI GCATC 7 cut(s) 319, 424, 451, 617, 679, 691, 899
MaeI CTAG 1 cut(s) 354
MaeII ACGT 2 cut(s) 585, 999
MaeIII GTNAC 2 cut(s) 511, 799
MalI GATC 3 cut(s) 40, 468, 591
MboI GATC 3 cut(s) 38, 466, 589
MboII GAAGA 8 cut(s) 24, 48, 539, 542, 740, 821, 881, 1139
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 51, 1045
MluCI AATT 8 cut(s) 248, 462, 504, 543, 672, 789, 885, 983
MlyI GAGTC 2 cut(s) 103, 388
MmeI TCCRAC 1 cut(s) 982
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 5 cut(s) 675, 719, 833, 1064, 1162
MslI CAYNNNNRTG 1 cut(s) 687
MspA1I CMGCKG 2 cut(s) 455, 938
MspI CCGG 3 cut(s) 25, 144, 905
MspR9I CCNGG 2 cut(s) 638, 906
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 638
MwoI GCNNNNNNNGC 8 cut(s) 15, 30, 138, 668, 935, 944, 953, 1049
NciI CCSGG 1 cut(s) 906
NdeII GATC 3 cut(s) 38, 466, 589
NlaIII CATG 6 cut(s) 47, 233, 599, 743, 880, 947
NmuCI GTSAC 1 cut(s) 799
NsbI TGCGCA 1 cut(s) 189
NspI RCATGY 3 cut(s) 233, 743, 947
PaeI GCATGC 1 cut(s) 743
PagI TCATGA 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 2 cut(s) 350, 867
PfoI TCCNGGA 1 cut(s) 904
PkrI GCNGC 7 cut(s) 389, 607, 661, 937, 949, 1054, 1096
PleI GAGTC 2 cut(s) 103, 388
PpsI GAGTC 2 cut(s) 103, 388
Psp124BI GAGCTC 2 cut(s) 51, 1045
Psp1406I AACGTT 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 636
PspFI CCCAGC 3 cut(s) 137, 862, 1058
PspGI CCWGG 1 cut(s) 636
PspPI GGNCC 4 cut(s) 131, 634, 758, 899
PsuI RGATCY 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 3 cut(s) 219, 422, 998
RsaNI GTAC 3 cut(s) 218, 421, 997
RseI CAYNNNNRTG 1 cut(s) 687
SacI GAGCTC 2 cut(s) 51, 1045
SaqAI TTAA 5 cut(s) 675, 719, 833, 1064, 1162
SatI GCNGC 7 cut(s) 388, 606, 660, 936, 948, 1053, 1095
Sau3AI GATC 3 cut(s) 38, 466, 589
Sau96I GGNCC 4 cut(s) 131, 634, 758, 899
SchI GAGTC 2 cut(s) 103, 388
ScrFI CCNGG 2 cut(s) 638, 906
SduI GDGCHC 2 cut(s) 51, 1045
SfaNI GCATC 7 cut(s) 319, 424, 451, 617, 679, 691, 899
SinI GGWCC 3 cut(s) 634, 758, 899
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SphI GCATGC 1 cut(s) 743
Sse9I AATT 8 cut(s) 248, 462, 504, 543, 672, 789, 885, 983
SsiI CCGC 4 cut(s) 398, 632, 936, 1082
SspMI CTAG 1 cut(s) 354
SstI GAGCTC 2 cut(s) 51, 1045
StyD4I CCNGG 2 cut(s) 636, 904
StyI CCWWGG 1 cut(s) 795
TaaI ACNGT 1 cut(s) 751
TaiI ACGT 2 cut(s) 588, 1002
TaqI TCGA 1 cut(s) 914
TasI AATT 8 cut(s) 248, 462, 504, 543, 672, 789, 885, 983
TatI WGTACW 1 cut(s) 217
TauI GCSGC 1 cut(s) 938
TfiI GAWTC 2 cut(s) 350, 867
Tru1I TTAA 5 cut(s) 675, 719, 833, 1064, 1162
Tru9I TTAA 5 cut(s) 675, 719, 833, 1064, 1162
TscAI CASTG 2 cut(s) 174, 789
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 6 cut(s) 387, 605, 659, 947, 1052, 1094
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 3 cut(s) 267, 336, 948
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 2 cut(s) 174, 789
VpaK11BI GGWCC 3 cut(s) 634, 758, 899
XapI RAATTY 4 cut(s) 248, 543, 789, 885
XbaI TCTAGA 1 cut(s) 353
XceI RCATGY 3 cut(s) 233, 743, 947
XmiI GTMKAC 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.