Rorug04G0307200

Cell division control protein 48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002639
Physical Location & Seq
Forward (+)
48312439 .. 48314185
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0307200.1

Sequence Viewer

Length: 342 bp
ATGCTTCAGTCCTCCTCATTCGGTTGGAAGGTTGAAGGAACTACCGAAAGGCCAAGACTATGTGTCTTCCGCTCCAACAAGCATCTCTATGTCCAAGTGATTGATGATACCAAGATGCATACACTTGCTTCAGCTTCAACAATGCAGAAGCCCATCTCTGAGGAGTTTGACTTCACTTCTGGTCCAACCATTGAAGTAGCAAAGAAGGTGGGAGAAGTCATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAGGTAGCCTTCGACCGAGGTGGCTATCCGTATCATGGACGTGTGGAAGCCCTTGCTACTGCTGCTAGGGAGAATGGCCTTCAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

8.6

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 10 - 113 3.8e-40 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 72
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 4 cut(s) 35, 138, 194, 335
AhdI GACNNNNNGTC 1 cut(s) 62
AjiI CACGTC 1 cut(s) 293
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 1 cut(s) 254
AoxI GGCC 2 cut(s) 50, 328
ApeKI GCWGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 161
BfaI CTAG 1 cut(s) 318
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 182
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 182
BmsI GCATC 2 cut(s) 91, 105
BpiI GAAGAC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 150
BseRI GAGGAG 2 cut(s) 4, 176
BseXI GCAGC 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 52, 330
BsiEI CGRYCG 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 287
BsnI GGCC 2 cut(s) 52, 330
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 1 cut(s) 70
BspANI GGCC 2 cut(s) 52, 330
BspCNI CTCAG 1 cut(s) 151
BspPI GGATC 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 159
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 52, 330
BtrI CACGTC 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 182
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 2 cut(s) 231, 287
CviJI RGCY 7 cut(s) 52, 134, 151, 260, 276, 302, 330
CviKI_1 RGCY 7 cut(s) 52, 134, 151, 260, 276, 302, 330
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DriI GACNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 120
FaeI CATG 2 cut(s) 234, 290
FaiI YATR 5 cut(s) 61, 90, 120, 232, 288
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 2 cut(s) 230, 286
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 315
HaeIII GGCC 2 cut(s) 52, 330
Hin1II CATG 2 cut(s) 234, 290
Hpy188I TCNGA 2 cut(s) 160, 341
HpyAV CCTTC 5 cut(s) 22, 29, 199, 271, 341
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 118, 145, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 2 cut(s) 234, 290
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 1 cut(s) 165
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 91, 105
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 292
MalI GATC 1 cut(s) 248
MbiI CCGCTC 1 cut(s) 72
MboI GATC 1 cut(s) 246
MboII GAAGA 1 cut(s) 58
MluCI AATT 1 cut(s) 335
MmeI TCCRAC 3 cut(s) 5, 99, 209
MnlI CCTC 4 cut(s) 22, 25, 154, 263
Mph1103I ATGCAT 1 cut(s) 120
MslI CAYNNNNRTG 2 cut(s) 87, 291
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 246
NlaIII CATG 2 cut(s) 234, 290
NsiI ATGCAT 1 cut(s) 120
PkrI GCNGC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 182
RseI CAYNNNNRTG 2 cut(s) 87, 291
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 182
SetI ASST 6 cut(s) 33, 136, 210, 258, 274, 295
SfaNI GCATC 2 cut(s) 91, 105
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 2 cut(s) 87, 291
Sse9I AATT 1 cut(s) 335
SsiI CCGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 318
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 264
TaqII GACCGA 1 cut(s) 282
TasI AATT 1 cut(s) 335
TseI GCWGC 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 182
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.