Rh6DG251600

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002639
Physical Location & Seq
Reverse (-)
43926544 .. 43931030
4487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG251600.1

Sequence Viewer

Length: 1359 bp
ATGGCTTCCAATAACTCTAGCGAAAGTCTTAAACGCAACTTCTCTGAAGACAATCACGAATCAGATGCCTTGAAGCAAAAGCTTGCTTTGCACAGAAAGTCTCTCCCAATCGCTACAGTTGAGAACCGGCTCGTCCAGGAGGTTTGGAAACATGATACCCTGATTATTGTTGGCGAAACTGGAAGCGGAAAAACAACGCAACTACCACAGTATTTGTACAATGCTGGATTTTGTGGAAATGGGAGAGTCATTGGGGTAACTCAACCTTGCTGTGTGGCGGCTGTGAATGCCGCGAAGCAGGTTGCTGAGGAATGTGGTGTTAGATTGGGTGAAACGGTTGGTTATTCCATCAGATTTCAGAATGTGACCTCTAGTTCAACAAGGATCAAGGAAGCGGTATCAGATCTATCTCTCTCTAGGTATTCAGCTATCATTGTGGATGAAGCTCATGAGAGAACTCTTGACACTGATGTATTGCTGGGTGTGCTGAAAAATGTACAAAATGCAAGGTCAGAATCTGTTGAATTGAAATTAATTATCATGTCCGCCAGCTTAGATGCTCGAATTTTCTCCGAATACTTTGGTGGTGCAAGAGCTATTCACATCCAAGGGAGACAGTTTCCTGTTGCTATATTTTGTACTTATCATCTTCCACCATCTTATTTACATGCTTCGTTCATTACCATATTTCAGATTCACCTGGAGGAAGAAGCTGGTGACATACTTGTCTTCTTGACTGGTAAAGACGAAATTGAATTCGTAGAGAGACTTATAGAAGAAAAACTTAAACAGTTACCGGAGAATAGTCAAAAACTAGTAGCGGTACCTTTATTTTCATCTCTTCCGTCAGAACAGCAAACTTGGCTTGCAGGGAGAGAAAGACCAGGGAAATGCTACTGTCTCTACCCAGAGAATGAATTTTGGAAACTTGAGGATTTGACAAAGCCAGATATCACGCGATGTGACCTCTCTAATGCCATTTTGCAACATAAGGCTTTGGGTGTTCATGATATCACTGGTTTCAACTTCATAGAAAAACCTTCAGGGGAATCTATTATAAAATTACTGGAGCAATTGACCCTGCTAGGTGCTTTGGCAGATGACCGTAAACTGTCAGATCCAGTTGGATGGCAAATGGCTGCCCTTCCCCTACCCCCTATTTATTCAAAAGCTCTAATTAAAGCAAGTGAACTCAACTGCCTGGAAGAGATGTTGATAACTGTTGCAATGCTCTCAGTAGAATCTACGTTTTTCACTCCCCGTGAGAAGTTAGAAGAGGCGAGAACTGCAAGGAAACGCTTTGAAAGTCAAGAGGGAGATCATCTTACTTTGATTAATCTATATCGAGCATCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

452

Amino Acids

50.5

Weight (kDa)

5.59

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_22 PF13401 54 - 186 5.4e-07 AAA domain
HA2_C PF21010 385 - 444 1.1e-12 Helicase associated domain (HA2), ratchet-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1058
AasI GACNNNNNNGTC 1 cut(s) 725
Acc36I ACCTGC 1 cut(s) 289
Acc65I GGTACC 1 cut(s) 823
AccB1I GGYRCC 1 cut(s) 823
AccII CGCG 2 cut(s) 293, 958
AciI CCGC 6 cut(s) 186, 278, 291, 395, 546, 821
AclWI GGATC 2 cut(s) 392, 1112
AcsI RAATTY 3 cut(s) 564, 755, 917
AcuI CTGAAG 2 cut(s) 66, 1026
AfaI GTAC 4 cut(s) 218, 498, 640, 825
AgsI TTSAA 8 cut(s) 73, 378, 524, 529, 755, 1024, 1167, 1304
AhlI ACTAGT 1 cut(s) 814
AjnI CCWGG 4 cut(s) 135, 699, 883, 1200
AluBI AGCT 7 cut(s) 82, 428, 446, 552, 596, 713, 1172
AluI AGCT 7 cut(s) 82, 428, 446, 552, 596, 713, 1172
Alw26I GTCTC 4 cut(s) 105, 607, 760, 905
AlwI GGATC 2 cut(s) 392, 1112
AlwNI CAGNNNCTG 1 cut(s) 518
ApeKI GCWGC 1 cut(s) 1139
ApoI RAATTY 3 cut(s) 564, 755, 917
AseI ATTAAT 2 cut(s) 533, 1335
Asp718I GGTACC 1 cut(s) 823
AsuHPI GGTGA 3 cut(s) 341, 689, 728
BanI GGYRCC 1 cut(s) 823
BbsI GAAGAC 2 cut(s) 54, 721
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 1126
BccI CCATC 3 cut(s) 356, 664, 1122
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 4 cut(s) 137, 701, 885, 1202
BcoDI GTCTC 4 cut(s) 105, 607, 760, 905
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 5 cut(s) 18, 372, 417, 815, 1085
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 289
BglII AGATCT 1 cut(s) 403
BisI GCNGC 3 cut(s) 279, 291, 1140
BlsI GCNGC 3 cut(s) 280, 292, 1141
Bme1390I CCNGG 4 cut(s) 137, 701, 885, 1202
BmiI GGNNCC 1 cut(s) 825
BmrFI CCNGG 4 cut(s) 137, 701, 885, 1202
BmsI GCATC 2 cut(s) 55, 547
BpiI GAAGAC 2 cut(s) 54, 721
BpmI CTGGAG 2 cut(s) 722, 1088
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 950
BsaJI CCNNGG 2 cut(s) 607, 884
BsaWI WCCGGW 1 cut(s) 796
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 5 cut(s) 184, 742, 1021, 1071, 1121
Bse3DI GCAATG 1 cut(s) 1233
BseBI CCWGG 4 cut(s) 137, 701, 885, 1202
BseDI CCNNGG 2 cut(s) 607, 884
BseGI GGATG 3 cut(s) 445, 603, 1133
BseMI GCAATG 1 cut(s) 1233
BseMII CTCAG 2 cut(s) 297, 1248
BseNI ACTGG 5 cut(s) 184, 742, 1021, 1071, 1121
BseXI GCAGC 1 cut(s) 1126
BseYI CCCAGC 1 cut(s) 478
Bsh1236I CGCG 2 cut(s) 293, 958
BshNI GGYRCC 1 cut(s) 823
BsiSI CCGG 2 cut(s) 127, 797
BsmAI GTCTC 4 cut(s) 105, 607, 760, 905
BsmI GAATGC 1 cut(s) 292
Bsp1407I TGTACA 2 cut(s) 216, 496
Bsp143I GATC 4 cut(s) 384, 403, 1117, 1318
BspACI CCGC 6 cut(s) 186, 278, 291, 395, 546, 821
BspCNI CTCAG 2 cut(s) 298, 1247
BspFNI CGCG 2 cut(s) 293, 958
BspHI TCATGA 2 cut(s) 448, 1006
BspLI GGNNCC 1 cut(s) 825
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 2 cut(s) 392, 1112
BspT107I GGYRCC 1 cut(s) 823
BsrDI GCAATG 1 cut(s) 1233
BsrFI RCCGGY 1 cut(s) 126
BsrGI TGTACA 2 cut(s) 216, 496
BsrI ACTGG 5 cut(s) 184, 742, 1021, 1071, 1121
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 607, 884
BssMI GATC 4 cut(s) 384, 403, 1117, 1318
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 4 cut(s) 137, 701, 885, 1202
Bst4CI ACNGT 9 cut(s) 118, 210, 337, 618, 792, 899, 1106, 1113, 1222
Bst6I CTCTTC 3 cut(s) 846, 1200, 1269
BstAUI TGTACA 2 cut(s) 216, 496
BstC8I GCNNGC 3 cut(s) 84, 550, 867
BstDEI CTNAG 3 cut(s) 306, 553, 1234
BstF5I GGATG 3 cut(s) 445, 603, 1133
BstFNI CGCG 2 cut(s) 293, 958
BstKTI GATC 4 cut(s) 387, 406, 1120, 1321
BstMAI GTCTC 4 cut(s) 105, 607, 760, 905
BstMBI GATC 4 cut(s) 384, 403, 1117, 1318
BstMWI GCNNNNNNNGC 5 cut(s) 88, 287, 484, 862, 1286
BstNI CCWGG 4 cut(s) 137, 701, 885, 1202
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 4 cut(s) 135, 699, 883, 1200
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 2 cut(s) 293, 958
BstV1I GCAGC 1 cut(s) 1126
BstV2I GAAGAC 2 cut(s) 54, 721
BstX2I RGATCY 2 cut(s) 403, 1117
BstXI CCANNNNNNTGG 1 cut(s) 1128
BstYI RGATCY 2 cut(s) 403, 1117
BtgZI GCGATG 1 cut(s) 973
BtsCI GGATG 3 cut(s) 445, 603, 1133
BtsIMutI CAGTG 2 cut(s) 465, 1014
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 3 cut(s) 84, 550, 867
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 2 cut(s) 448, 1006
Cfr10I RCCGGY 1 cut(s) 126
Csp6I GTAC 4 cut(s) 217, 497, 639, 824
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 5 cut(s) 152, 449, 541, 668, 1007
CviQI GTAC 4 cut(s) 217, 497, 639, 824
DdeI CTNAG 3 cut(s) 306, 553, 1234
DpnI GATC 4 cut(s) 386, 405, 1119, 1320
DpnII GATC 4 cut(s) 384, 403, 1117, 1318
DrdI GACNNNNNNGTC 1 cut(s) 725
DseDI GACNNNNNNGTC 1 cut(s) 725
Eam1104I CTCTTC 3 cut(s) 846, 1200, 1269
EarI CTCTTC 3 cut(s) 846, 1200, 1269
EciI GGCGGA 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 607
Eco32I GATATC 2 cut(s) 952, 1012
Eco57I CTGAAG 2 cut(s) 66, 1026
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 4 cut(s) 135, 699, 883, 1200
EcoRV GATATC 2 cut(s) 952, 1012
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 5 cut(s) 155, 452, 544, 671, 1010
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FatI CATG 5 cut(s) 151, 448, 540, 667, 1006
Fnu4HI GCNGC 3 cut(s) 279, 291, 1140
FokI GGATG 3 cut(s) 452, 590, 1140
Fsp4HI GCNGC 3 cut(s) 279, 291, 1140
FspBI CTAG 5 cut(s) 18, 372, 417, 815, 1085
GluI GCNGC 3 cut(s) 279, 291, 1140
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 722, 1088
HapII CCGG 2 cut(s) 127, 797
Hin1II CATG 5 cut(s) 155, 452, 544, 671, 1010
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 6 cut(s) 59, 246, 515, 694, 1049, 1241
HpaII CCGG 2 cut(s) 127, 797
HphI GGTGA 3 cut(s) 341, 689, 728
Hpy166II GTNNAC 2 cut(s) 1109, 1190
Hpy188III TCNNGA 6 cut(s) 56, 449, 461, 733, 1007, 1310
Hpy8I GTNNAC 2 cut(s) 1109, 1190
HpyAV CCTTC 2 cut(s) 1050, 1154
HpyCH4III ACNGT 9 cut(s) 118, 210, 337, 618, 792, 899, 1106, 1113, 1222
HpyCH4IV ACGT 1 cut(s) 1247
HpyCH4V TGCA 7 cut(s) 91, 506, 590, 869, 985, 1226, 1289
HpyF10VI GCNNNNNNNGC 5 cut(s) 88, 287, 484, 862, 1286
HpyF3I CTNAG 3 cut(s) 306, 553, 1234
HpySE526I ACGT 1 cut(s) 1247
Hsp92II CATG 5 cut(s) 155, 452, 544, 671, 1010
KpnI GGTACC 1 cut(s) 827
Kzo9I GATC 4 cut(s) 384, 403, 1117, 1318
LmnI GCTCC 1 cut(s) 1069
Lsp1109I GCAGC 1 cut(s) 1126
LweI GCATC 2 cut(s) 55, 547
MaeI CTAG 5 cut(s) 18, 372, 417, 815, 1085
MaeII ACGT 1 cut(s) 1247
MaeIII GTNAC 5 cut(s) 256, 364, 716, 792, 962
MalI GATC 4 cut(s) 386, 405, 1119, 1320
MboI GATC 4 cut(s) 384, 403, 1117, 1318
MboII GAAGA 8 cut(s) 59, 641, 719, 721, 788, 833, 1217, 1286
MfeI CAATTG 1 cut(s) 1073
MflI RGATCY 2 cut(s) 403, 1117
MlyI GAGTC 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 1105
MnlI CCTC 8 cut(s) 133, 301, 379, 697, 925, 977, 1270, 1306
MseI TTAA 5 cut(s) 30, 533, 786, 1179, 1335
MspI CCGG 2 cut(s) 127, 797
MspR9I CCNGG 4 cut(s) 137, 701, 885, 1202
MunI CAATTG 1 cut(s) 1073
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 4 cut(s) 137, 701, 885, 1202
MvnI CGCG 2 cut(s) 293, 958
MwoI GCNNNNNNNGC 5 cut(s) 88, 287, 484, 862, 1286
NdeII GATC 4 cut(s) 384, 403, 1117, 1318
NlaIII CATG 5 cut(s) 155, 452, 544, 671, 1010
NlaIV GGNNCC 1 cut(s) 825
NmuCI GTSAC 3 cut(s) 364, 716, 962
NspI RCATGY 1 cut(s) 671
PagI TCATGA 2 cut(s) 448, 1006
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 5 cut(s) 59, 515, 694, 1049, 1241
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 3 cut(s) 280, 292, 1141
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PshBI ATTAAT 2 cut(s) 533, 1335
PsiI TTATAA 1 cut(s) 1058
Psp6I CCWGG 4 cut(s) 135, 699, 883, 1200
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 4 cut(s) 135, 699, 883, 1200
PspN4I GGNNCC 1 cut(s) 825
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 2 cut(s) 403, 1117
RsaI GTAC 4 cut(s) 218, 498, 640, 825
RsaNI GTAC 4 cut(s) 217, 497, 639, 824
SaqAI TTAA 5 cut(s) 30, 533, 786, 1179, 1335
SatI GCNGC 3 cut(s) 279, 291, 1140
Sau3AI GATC 4 cut(s) 384, 403, 1117, 1318
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 4 cut(s) 137, 701, 885, 1202
SfaNI GCATC 2 cut(s) 55, 547
SfcI CTRYAG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
SpeI ACTAGT 1 cut(s) 814
SsiI CCGC 6 cut(s) 186, 278, 291, 395, 546, 821
SspMI CTAG 5 cut(s) 18, 372, 417, 815, 1085
StyD4I CCNGG 4 cut(s) 135, 699, 883, 1200
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 9 cut(s) 118, 210, 337, 618, 792, 899, 1106, 1113, 1222
TaiI ACGT 1 cut(s) 1250
TaqI TCGA 2 cut(s) 562, 1345
TatI WGTACW 3 cut(s) 216, 496, 638
TauI GCSGC 2 cut(s) 281, 293
TfiI GAWTC 5 cut(s) 59, 515, 694, 1049, 1241
Tru1I TTAA 5 cut(s) 30, 533, 786, 1179, 1335
Tru9I TTAA 5 cut(s) 30, 533, 786, 1179, 1335
TscAI CASTG 2 cut(s) 472, 1021
TseFI GTSAC 3 cut(s) 364, 716, 962
TseI GCWGC 1 cut(s) 1139
Tsp45I GTSAC 3 cut(s) 364, 716, 962
TspDTI ATGAA 6 cut(s) 456, 667, 825, 930, 995, 1018
TspGWI ACGGA 1 cut(s) 834
TspRI CASTG 2 cut(s) 472, 1021
VspI ATTAAT 2 cut(s) 533, 1335
XapI RAATTY 3 cut(s) 564, 755, 917
XceI RCATGY 1 cut(s) 671
XspI CTAG 5 cut(s) 18, 372, 417, 815, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.