Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004728.1

Orthogroup ID

OG0002639

Physical Location & Seq

Genomic Coordinates Forward (+)

18116 .. 25796

Gene Structure 7681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004728.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2583 bp

atggaaacccacagctcctgtagcatcacaaacgacgacggcgaatggagagccgaaaaagctataggcggcaacgcccaagctctccaagctctccgagaactcatcgtctaccctctcctcttttctcgccaagccaaaaagctcggtctcaaatggccccgaggtttgcttctctacggtcctcccggcaccggaaagacaagcttggtccgcgcagtggttcaggaatgtggtgcgcatttagttctcatcagtccgcatactgttcacagagcttataccggagagagtgagttggcactgcgagaggcttttgcggaggccgcgtcacataccttgtcagggaagccgtctgttgtgtttatagatgaaatcgatgccctctgtcctcgccgtgattctagttttagctcgccgcggatatcatcgccgcctccgcctcagaagcagtcgctgctctatgcttcaatggctcacggacggctcaataactccaccagcggccttaaacgcagcttctccgacgagaatcgtaagcccgacgcctttgccaagaggcagaagctttcgcagcacaggaaggctctcccgatcgcttctgttgagaagcgtctcgtagaggaagttagaaagcatgatactttgattattgttggcgaaactggaagcggaaaaacaacacaattacctcagtttttgtacaatgctggattttgtgggtatgggaaagtcattggggtaactcagcctaggcgtgtggctgctatgactgtggcgaaacgggttgctgaggaatgcggtgttactttgggtgaaaaggttggttacgctgtcagatttgaggatgtgacctctagttcaacaaggatcaagtatatgactgatggattgctactgagggaagcactattggatccatatctctctaagtattcagtcgtcattgtcgatgaagcgcatgagagaactgtccagactgatgtcttactgggcttgcttaaaaatgtacaaaatgcaaggtcaaaagttgtcaataaccaccaagatacaaaaaacacgaagacaaataatgacatgcagttggataaagaaaatggttctcattccttgagctttctcaagcaatgccaaggaaggaatccattgaagttaattatcatgtctgccagtttggatgcacgaattttctccgagtacttcggtggtgcaagagctgttcacatccaaggtcgacagtttcctgttgatatatattatactcatcacaatgtacaagattatctagatgcatcgttaactgccatatttcagattcatatggaggaggaccctggtgatatacttgtatttttgactggtcaagaagaaattgaatctgtacagagacttgtcaaagaaagacttaaacagttacctgaaaccagtcaaaaacttgtagctgttcctatattctcatctcttccatcagaacagcaaatgcaagtgtttgcaccggctcctgatggatttcgtaaggtaatattggcaacgaatattgccgagacatctgtgacaatacctggaatcaagtatgtaatagatcctgggtttgtaaaagcacgtacctatgatccgaataaagggttatcaagtttgaatgttattccaatttcaaaagcacaggctcttcagagaagtgggcgtgcagggagagaaagatcagggaagtgcttccgcctctacccagagaatcaatttgagaaacttgaggattcaacaaagccagagatcaagcggtgtgacctctctagtataattttgcaacttaaggttctgggtgttgatgatgtcattgggttcgacttcatagataaaccttcaaggtcggctattgtcaaatcactggagcaattgtatgtgctaggtgctttaacagatgagtgtaaactatcagatccagttggacgtcaaatggcaagccttcccctagaccctattttctcaaaagctgtaatcctagcaagtgaaactgaattcaattgcctcgaagagatgttgataactgttgcaatgctctcagttgagtccatatttttcgctccccgtgagaaattgaacgaggctagaactgcaatgaaatgctttgcaagtccagatggggaccacctcactttggttaatgtatatcgagcgtttaatgagttttcggagaagagatcagatctcagtaaagagaaacatgaaaaaagtctcaggaaatggtgcaaggacaatttcattaatggtcgctccctgaagcatgctcgtgacattcacagccaaatccgagggaatgttgaacaaatgggtcttcatgtagcttcttgcggggatgacatgcttccgtttcgaagatgtcttgcagcgtctttcttcctcaatgcagctttaaagcagcccgagggaacttacagggctttagcaaatggtcaggtggttcggattcatccaattgaatctagtgccaaaaggtcttggatagatttgatcatttccaattgcaagttacatgcaagcattatcagatatttcccacctcatcaactgggtcgaaaaccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko03050 ko05169 map03040 map03050 map05169

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

860

Amino Acids

95.78

Weight (kDa)

9.06

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26370
fragaria_vesca	FvH4_4g29860 FvH4_4g29860 FvH4_4g29860 FvH4_4g29860 FvH4_4g29860 FvH4_4g29860
malus_domestica	MD16G1060000.v1.1
prunus_persica	Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1 Prupe.1G288500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0438111 RchiOBHm_Chr6g0281861
rosa_laevigata	RLG00000001450 RLG00000006387 RLG00000012924
rosa_multiflora	Rmu_sc0001992.1_g000015 Rmu_sc0004728.1_g000005 Rmu_sc0039364.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379250
rosa_rugosa	Rorug04G0307200 Rorug04G0307200 Rorug06G0144200
rosa_samantha	Rh4AG358600 Rh4CG383600 Rh4DG364400 Rh6AG257300 Rh6BG260300 Rh6CG259400 Rh6DG251600
rosa_wichuraiana	Rw0G006310 Rw0G016250 Rw6G022280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1951
Acc16I	TGCGCA	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	191
AccI	GTMKAC	2 cut(s)	111, 1234
AccII	CGCG	3 cut(s)	216, 329, 421
AclWI	GGATC	6 cut(s)	878, 911, 924, 1577, 1607, 1931
AcsI	RAATTY	2 cut(s)	1185, 2015
AcuI	CTGAAG	2 cut(s)	1655, 2297
AcyI	GRCGYC	2 cut(s)	546, 1948
AfaI	GTAC	6 cut(s)	704, 1011, 1199, 1275, 1383, 1606
AfiI	CCNNNNNNNGG	5 cut(s)	194, 220, 345, 1622, 2155
AflII	CTTAAG	1 cut(s)	1808
AjnI	CCWGG	3 cut(s)	1333, 1561, 1585
Alw26I	GTCTC	5 cut(s)	155, 620, 1381, 1538, 2237
AlwI	GGATC	6 cut(s)	878, 911, 924, 1577, 1607, 1931
AlwNI	CAGNNNCTG	2 cut(s)	18, 457
Ama87I	CYCGRG	2 cut(s)	162, 2420
AoxI	GGCC	3 cut(s)	158, 324, 505
ApeKI	GCWGC	7 cut(s)	457, 516, 574, 764, 2384, 2405, 2416
ApoI	RAATTY	2 cut(s)	1185, 2015
AseI	ATTAAT	1 cut(s)	2262
Asp700I	GAANNNNTTC	1 cut(s)	1712
AspA2I	CCTAGG	1 cut(s)	752
AspLEI	GCGC	3 cut(s)	218, 241, 961
AspS9I	GGNCC	5 cut(s)	159, 182, 211, 1330, 2143
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	827, 1349
AsuII	TTCGAA	1 cut(s)	2371
AvaI	CYCGRG	2 cut(s)	162, 2420
AvaII	GGWCC	4 cut(s)	182, 211, 1330, 2143
AvrII	CCTAGG	1 cut(s)	752
BamHI	GGATCC	1 cut(s)	916
BanI	GGYRCC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	2286
BbsI	GAAGAC	2 cut(s)	1070, 2324
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	7 cut(s)	444, 528, 586, 751, 2396, 2417, 2428
BccI	CCATC	4 cut(s)	881, 1474, 1499, 2132
BceAI	ACGGC	4 cut(s)	55, 337, 381, 500
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	3 cut(s)	1335, 1563, 1587
BclI	TGATCA	1 cut(s)	2508
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	5 cut(s)	155, 620, 1381, 1538, 2237
BfmI	CTRYAG	2 cut(s)	19, 63
BfrI	CTTAAG	1 cut(s)	1808
BglII	AGATCT	1 cut(s)	2203
BlnI	CCTAGG	1 cut(s)	752
BmcAI	AGTACT	1 cut(s)	1199
Bme1390I	CCNGG	4 cut(s)	189, 1335, 1563, 1587
Bme18I	GGWCC	4 cut(s)	182, 211, 1330, 2143
BmeT110I	CYCGRG	2 cut(s)	162, 2420
BmgT120I	GGNCC	5 cut(s)	159, 182, 211, 1330, 2143
BmiI	GGNNCC	6 cut(s)	161, 193, 918, 1332, 1500, 2144
BmrFI	CCNGG	4 cut(s)	189, 1335, 1563, 1587
BmrI	ACTGGG	2 cut(s)	1001, 2576
BmsI	GCATC	5 cut(s)	33, 370, 1168, 1279, 1301
BmuI	ACTGGG	2 cut(s)	1001, 2576
BoxI	GACNNNNGTC	1 cut(s)	983
BpiI	GAAGAC	2 cut(s)	1070, 2324
BpmI	CTGGAG	1 cut(s)	1907
Bpu10I	CCTNAGC	1 cut(s)	792
Bpu14I	TTCGAA	1 cut(s)	2371
BpuEI	CTTGAG	3 cut(s)	1106, 1132, 1769
BpuMI	CCSGG	1 cut(s)	189
Bsa29I	ATCGAT	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	1604
BsaBI	GATNNNNATC	1 cut(s)	921
BsaHI	GRCGYC	2 cut(s)	546, 1948
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	9 cut(s)	163, 419, 752, 1132, 1228, 1333, 1586, 2308, 2421
BsaWI	WCCGGW	2 cut(s)	194, 284
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 1880, 1910
Bsc4I	CCNNNNNNNGG	5 cut(s)	194, 220, 345, 1622, 2155
Bse118I	RCCGGY	1 cut(s)	1495
Bse1I	ACTGG	8 cut(s)	670, 996, 1170, 1363, 1425, 1890, 1940, 2571
Bse3DI	GCAATG	3 cut(s)	1133, 2058, 2121
Bse8I	GATNNNNATC	1 cut(s)	921
BseBI	CCWGG	3 cut(s)	1335, 1563, 1587
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	9 cut(s)	163, 419, 752, 1132, 1228, 1333, 1586, 2308, 2421
BseGI	GGATG	5 cut(s)	853, 1183, 1224, 2359, 2467
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	5 cut(s)	194, 220, 345, 1622, 2155
BseMI	GCAATG	3 cut(s)	1133, 2058, 2121
BseMII	CTCAG	8 cut(s)	458, 707, 761, 783, 890, 2073, 2221, 2248
BseNI	ACTGG	8 cut(s)	670, 996, 1170, 1363, 1425, 1890, 1940, 2571
BseRI	GAGGAG	2 cut(s)	110, 1340
BseXI	GCAGC	7 cut(s)	444, 528, 586, 751, 2396, 2417, 2428
BsgI	GTGCAG	1 cut(s)	1707
Bsh1236I	CGCG	3 cut(s)	216, 329, 421
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	160, 326, 507
BshNI	GGYRCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	597
BsiHKCI	CYCGRG	2 cut(s)	162, 2420
BsiSI	CCGG	4 cut(s)	189, 195, 285, 1496
BslFI	GGGAC	1 cut(s)	2156
BslI	CCNNNNNNNGG	5 cut(s)	194, 220, 345, 1622, 2155
BsmAI	GTCTC	5 cut(s)	155, 620, 1381, 1538, 2237
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	2156
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	160, 326, 507
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	2 cut(s)	162, 2420
Bsp119I	TTCGAA	1 cut(s)	2371
Bsp1407I	TGTACA	4 cut(s)	702, 1009, 1273, 1381
BspANI	GGCC	3 cut(s)	160, 326, 507
BspCNI	CTCAG	8 cut(s)	457, 706, 760, 784, 891, 2072, 2220, 2247
BspDI	ATCGAT	1 cut(s)	378
BspFNI	CGCG	3 cut(s)	216, 329, 421
BspLI	GGNNCC	6 cut(s)	161, 193, 918, 1332, 1500, 2144
BspPI	GGATC	6 cut(s)	878, 911, 924, 1577, 1607, 1931
BspQI	GCTCTTC	1 cut(s)	1674
BspT104I	TTCGAA	1 cut(s)	2371
BspT107I	GGYRCC	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	1808
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	3 cut(s)	1133, 2058, 2121
BsrFI	RCCGGY	1 cut(s)	1495
BsrGI	TGTACA	4 cut(s)	702, 1009, 1273, 1381
BsrI	ACTGG	8 cut(s)	670, 996, 1170, 1363, 1425, 1890, 1940, 2571
BssAI	RCCGGY	1 cut(s)	1495
BssECI	CCNNGG	9 cut(s)	163, 419, 752, 1132, 1228, 1333, 1586, 2308, 2421
BssNI	GRCGYC	2 cut(s)	546, 1948
BssSI	CACGAG	1 cut(s)	2286
BssT1I	CCWWGG	3 cut(s)	752, 1132, 1228
Bst2BI	CACGAG	1 cut(s)	2286
Bst2UI	CCWGG	3 cut(s)	1335, 1563, 1587
Bst4CI	ACNGT	7 cut(s)	182, 268, 775, 973, 1239, 1413, 2047
Bst6I	CTCTTC	4 cut(s)	1467, 1674, 2025, 2189
BstACI	GRCGYC	2 cut(s)	546, 1948
BstAFI	CTTAAG	1 cut(s)	1808
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstAUI	TGTACA	4 cut(s)	702, 1009, 1273, 1381
BstBAI	YACGTR	1 cut(s)	1604
BstBI	TTCGAA	1 cut(s)	2371
BstC8I	GCNNGC	6 cut(s)	416, 998, 1686, 1960, 2283, 2536
BstDEI	CTNAG	9 cut(s)	444, 693, 747, 792, 899, 930, 2059, 2207, 2234
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	5 cut(s)	853, 1183, 1224, 2359, 2467
BstFNI	CGCG	3 cut(s)	216, 329, 421
BstHHI	GCGC	3 cut(s)	218, 241, 961
BstMAI	GTCTC	5 cut(s)	155, 620, 1381, 1538, 2237
BstMCI	CGRYCG	1 cut(s)	597
BstNI	CCWGG	3 cut(s)	1335, 1563, 1587
BstNSI	RCATGY	4 cut(s)	1081, 2285, 2362, 2534
BstPAI	GACNNNNGTC	1 cut(s)	983
BstSCI	CCNGG	4 cut(s)	187, 1333, 1561, 1585
BstSFI	CTRYAG	2 cut(s)	19, 63
BstUI	CGCG	3 cut(s)	216, 329, 421
BstV1I	GCAGC	7 cut(s)	444, 528, 586, 751, 2396, 2417, 2428
BstV2I	GAAGAC	2 cut(s)	1070, 2324
BstX2I	RGATCY	4 cut(s)	916, 1582, 1936, 2203
BstYI	RGATCY	4 cut(s)	916, 1582, 1936, 2203
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	160, 326, 507
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	5 cut(s)	853, 1183, 1224, 2359, 2467
BtsI	GCAGTG	2 cut(s)	225, 302
BtsIMutI	CAGTG	3 cut(s)	225, 302, 1883
Cac8I	GCNNGC	6 cut(s)	416, 998, 1686, 1960, 2283, 2536
CaiI	CAGNNNCTG	2 cut(s)	18, 457
CfoI	GCGC	3 cut(s)	218, 241, 961
Cfr10I	RCCGGY	1 cut(s)	1495
Cfr13I	GGNCC	5 cut(s)	159, 182, 211, 1330, 2143
Cfr42I	CCGCGG	1 cut(s)	422
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	4 cut(s)	318, 554, 602, 2376
Csp6I	GTAC	6 cut(s)	703, 1010, 1198, 1274, 1382, 1605
CviAII	CATG	9 cut(s)	638, 962, 1078, 1162, 2222, 2282, 2336, 2359, 2531
CviQI	GTAC	6 cut(s)	703, 1010, 1198, 1274, 1382, 1605
DdeI	CTNAG	9 cut(s)	444, 693, 747, 792, 899, 930, 2059, 2207, 2234
DraI	TTTAAA	1 cut(s)	2412
Eam1104I	CTCTTC	4 cut(s)	1467, 1674, 2025, 2189
EarI	CTCTTC	4 cut(s)	1467, 1674, 2025, 2189
EciI	GGCGGA	2 cut(s)	429, 1706
Eco130I	CCWWGG	3 cut(s)	752, 1132, 1228
Eco31I	GGTCTC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	4 cut(s)	182, 211, 1330, 2143
Eco57I	CTGAAG	2 cut(s)	1655, 2297
Eco88I	CYCGRG	2 cut(s)	162, 2420
EcoO109I	RGGNCCY	1 cut(s)	1330
EcoRI	GAATTC	1 cut(s)	2015
EcoRII	CCWGG	3 cut(s)	1333, 1561, 1585
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	3 cut(s)	752, 1132, 1228
EcoT22I	ATGCAT	1 cut(s)	1294
ErhI	CCWWGG	3 cut(s)	752, 1132, 1228
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	9 cut(s)	641, 965, 1081, 1165, 2225, 2285, 2339, 2362, 2534
FalI	AAGNNNNNCTT	4 cut(s)	191, 223, 1389, 1421
FaqI	GGGAC	1 cut(s)	2156
FatI	CATG	9 cut(s)	637, 961, 1077, 1161, 2221, 2281, 2335, 2358, 2530
FauI	CCCGC	1 cut(s)	2342
FauNDI	CATATG	1 cut(s)	1320
FbaI	TGATCA	1 cut(s)	2508
FblI	GTMKAC	2 cut(s)	111, 1234
FokI	GGATG	5 cut(s)	860, 1190, 1211, 2366, 2454
FspAI	RTGCGCAY	1 cut(s)	240
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	3 cut(s)	217, 240, 960
GsuI	CTGGAG	1 cut(s)	1907
HaeIII	GGCC	3 cut(s)	160, 326, 507
HapII	CCGG	4 cut(s)	189, 195, 285, 1496
HgaI	GACGC	4 cut(s)	318, 554, 602, 2376
HhaI	GCGC	3 cut(s)	218, 241, 961
Hin1I	GRCGYC	2 cut(s)	546, 1948
Hin1II	CATG	9 cut(s)	641, 965, 1081, 1165, 2225, 2285, 2339, 2362, 2534
Hin6I	GCGC	3 cut(s)	216, 239, 959
HinP1I	GCGC	3 cut(s)	216, 239, 959
HincII	GTYRAC	2 cut(s)	1235, 1299
HindII	GTYRAC	2 cut(s)	1235, 1299
HindIII	AAGCTT	2 cut(s)	205, 566
HpaI	GTTAAC	1 cut(s)	1299
HpaII	CCGG	4 cut(s)	189, 195, 285, 1496
HphI	GGTGA	2 cut(s)	827, 1349
Hpy166II	GTNNAC	6 cut(s)	112, 271, 1222, 1235, 1299, 1928
Hpy188III	TCNNGA	9 cut(s)	227, 592, 976, 1286, 1364, 1502, 2135, 2236, 2288
Hpy8I	GTNNAC	6 cut(s)	112, 271, 1222, 1235, 1299, 1928
Hpy99I	CGWCG	4 cut(s)	38, 41, 530, 548
HpyAV	CCTTC	4 cut(s)	577, 1131, 1869, 1973
HpyCH4III	ACNGT	7 cut(s)	182, 268, 775, 973, 1239, 1413, 2047
HpyCH4IV	ACGT	2 cut(s)	1603, 1948
HpyF3I	CTNAG	9 cut(s)	444, 693, 747, 792, 899, 930, 2059, 2207, 2234
HpySE526I	ACGT	2 cut(s)	1603, 1948
Hsp92I	GRCGYC	2 cut(s)	546, 1948
Hsp92II	CATG	9 cut(s)	641, 965, 1081, 1165, 2225, 2285, 2339, 2362, 2534
HspAI	GCGC	3 cut(s)	216, 239, 959
Ksp22I	TGATCA	1 cut(s)	2508
KspAI	GTTAAC	1 cut(s)	1299
KspI	CCGCGG	1 cut(s)	422
LguI	GCTCTTC	1 cut(s)	1674
LmnI	GCTCC	5 cut(s)	20, 1504, 1888, 2086, 2276
Lsp1109I	GCAGC	7 cut(s)	444, 528, 586, 751, 2396, 2417, 2428
LweI	GCATC	5 cut(s)	33, 370, 1168, 1279, 1301
MaeII	ACGT	2 cut(s)	1603, 1948
MboII	GAAGA	9 cut(s)	1075, 1379, 1454, 1661, 2042, 2206, 2324, 2385, 2386
MfeI	CAATTG	4 cut(s)	1892, 2020, 2472, 2518
MflI	RGATCY	4 cut(s)	916, 1582, 1936, 2203
MlyI	GAGTC	1 cut(s)	2075
MmeI	TCCRAC	3 cut(s)	549, 1065, 1924
Mph1103I	ATGCAT	1 cut(s)	1294
MroXI	GAANNNNTTC	1 cut(s)	1712
MslI	CAYNNNNRTG	2 cut(s)	1269, 2286
MspA1I	CMGCKG	2 cut(s)	421, 504
MspCI	CTTAAG	1 cut(s)	1808
MspI	CCGG	4 cut(s)	189, 195, 285, 1496
MspR9I	CCNGG	4 cut(s)	189, 1335, 1563, 1587
MunI	CAATTG	4 cut(s)	1892, 2020, 2472, 2518
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	3 cut(s)	1335, 1563, 1587
MvnI	CGCG	3 cut(s)	216, 329, 421
NciI	CCSGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	1320
NlaIII	CATG	9 cut(s)	641, 965, 1081, 1165, 2225, 2285, 2339, 2362, 2534
NlaIV	GGNNCC	6 cut(s)	161, 193, 918, 1332, 1500, 2144
NmeAIII	GCCGAG	1 cut(s)	1567
NmuCI	GTSAC	5 cut(s)	330, 850, 1552, 1781, 2288
NsbI	TGCGCA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	1294
NspI	RCATGY	4 cut(s)	1081, 2285, 2362, 2534
NspV	TTCGAA	1 cut(s)	2371
PaeI	GCATGC	1 cut(s)	2285
PciSI	GCTCTTC	1 cut(s)	1674
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 948
PctI	GAATGC	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	1712
Ple19I	CGATCG	1 cut(s)	597
PleI	GAGTC	1 cut(s)	2074
PpsI	GAGTC	1 cut(s)	2074
Ppu21I	YACGTR	1 cut(s)	1604
PpuMI	RGGWCCY	1 cut(s)	1330
PshAI	GACNNNNGTC	1 cut(s)	983
PshBI	ATTAAT	1 cut(s)	2262
Psp5II	RGGWCCY	1 cut(s)	1330
Psp6I	CCWGG	3 cut(s)	1333, 1561, 1585
PspGI	CCWGG	3 cut(s)	1333, 1561, 1585
PspN4I	GGNNCC	6 cut(s)	161, 193, 918, 1332, 1500, 2144
PspPI	GGNCC	5 cut(s)	159, 182, 211, 1330, 2143
PspPPI	RGGWCCY	1 cut(s)	1330
PstNI	CAGNNNCTG	2 cut(s)	18, 457
PsuI	RGATCY	4 cut(s)	916, 1582, 1936, 2203
PvuI	CGATCG	1 cut(s)	597
RsaI	GTAC	6 cut(s)	704, 1011, 1199, 1275, 1383, 1606
RsaNI	GTAC	6 cut(s)	703, 1010, 1198, 1274, 1382, 1605
RseI	CAYNNNNRTG	2 cut(s)	1269, 2286
SacII	CCGCGG	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	1233
SapI	GCTCTTC	1 cut(s)	1674
Sau96I	GGNCC	5 cut(s)	159, 182, 211, 1330, 2143
ScaI	AGTACT	1 cut(s)	1199
SchI	GAGTC	1 cut(s)	2075
ScrFI	CCNGG	4 cut(s)	189, 1335, 1563, 1587
SfaNI	GCATC	5 cut(s)	33, 370, 1168, 1279, 1301
SfcI	CTRYAG	2 cut(s)	19, 63
Sfr303I	CCGCGG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	2371
SgrBI	CCGCGG	1 cut(s)	422
SinI	GGWCC	4 cut(s)	182, 211, 1330, 2143
SmiMI	CAYNNNNRTG	2 cut(s)	1269, 2286
SmlI	CTYRAG	4 cut(s)	1111, 1121, 1748, 1808
SmoI	CTYRAG	4 cut(s)	1111, 1121, 1748, 1808
SphI	GCATGC	1 cut(s)	2285
SspI	AATATT	2 cut(s)	1524, 1537
StyD4I	CCNGG	4 cut(s)	187, 1333, 1561, 1585
StyI	CCWWGG	3 cut(s)	752, 1132, 1228
TaaI	ACNGT	7 cut(s)	182, 268, 775, 973, 1239, 1413, 2047
TaiI	ACGT	2 cut(s)	1606, 1951
TaqI	TCGA	8 cut(s)	378, 951, 1234, 1842, 2028, 2170, 2371, 2572
TaqII	GACCGA	1 cut(s)	137
TatI	WGTACW	5 cut(s)	702, 1009, 1197, 1273, 1381
TauI	GCSGC	5 cut(s)	72, 329, 421, 436, 507
TscAI	CASTG	3 cut(s)	225, 309, 1890
TseFI	GTSAC	5 cut(s)	330, 850, 1552, 1781, 2288
TseI	GCWGC	7 cut(s)	457, 516, 574, 764, 2384, 2405, 2416
Tsp45I	GTSAC	5 cut(s)	330, 850, 1552, 1781, 2288
TspDTI	ATGAA	9 cut(s)	387, 969, 1307, 1837, 2132, 2238, 2248, 2324, 2456
TspGWI	ACGGA	2 cut(s)	495, 2355
TspRI	CASTG	3 cut(s)	225, 309, 1890
Vha464I	CTTAAG	1 cut(s)	1808
VpaK11BI	GGWCC	4 cut(s)	182, 211, 1330, 2143
VspI	ATTAAT	1 cut(s)	2262
XapI	RAATTY	2 cut(s)	1185, 2015
XbaI	TCTAGA	1 cut(s)	1285
XceI	RCATGY	4 cut(s)	1081, 2285, 2362, 2534
XmaJI	CCTAGG	1 cut(s)	752
XmiI	GTMKAC	2 cut(s)	111, 1234
XmnI	GAANNNNTTC	1 cut(s)	1712
ZraI	GACGTC	1 cut(s)	1949
ZrmI	AGTACT	1 cut(s)	1199
Zsp2I	ATGCAT	1 cut(s)	1294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.