Rmu_sc0039364.1_g000001

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039364.1
OG0002639
Physical Location & Seq
Reverse (-)
1 .. 1929
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039364.1_g000001.1.cds

Sequence Viewer

Length: 1013 bp
atgtgtgattttggttttaggaggcagaagctttcgcagcacaggaaggctctcccgatcgcttctgttgagaagcgtctggtagaggaagttagaaagcatgatactttgattattgttggcgaaactggaagcggaaaaacaacacaattacctcagtttttgtacaatgctggattttgtgggtatgggaaagtcattggggtaactcagcctaggcgtgtggctgctatgactgtggcgaaacgggttgctgaggaatgcggtgttactttgggtgaaaaggttggttacgctgtcagatttgaggatgtgacctctagttcaacaacactattggatccatatctctctaagtattcagtcgtcattgtcgatgaagcgcatgagagaactgtccagactgatgtcttactgggcttgcttaaaaatgtacaaaatgcaaggtcaaaagttgtcaataaccaccaagatacaaaaaacacgaagacaaataatgacatgcagttggataaagaaaatggttctcattccttgagctttctcaagcaatgccaaggaaggaatccattgaagttaattatcatgtctgccagtttggatgcacgaattttctccgagtacttcggtggtgcaagagctgttcacatccaaggtcgacagtttcctgttgatatatattatactcatcacaatgtacaagattatctagatgcatcgttaactgccatatttcagattcatatggaggaggaccctggtgatatacttgtatttttgactggtcaagaagaaattgaatctgtacagagacttgtcaaagaaagacttaaacagttacctgaaaccagtcaaaaacttgtagctgttcctatattctcatctcttccatcagaacagcaaatgcaagtgtttgcaccggctcctgatggatttcgtaaggtaatattggcaacgaatattgctgagacatctgtgacaatacctggaatcaagtatgtaatagatcctgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

338

Amino Acids

37.68

Weight (kDa)

7.7

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 658
AciI CCGC 2 cut(s) 135, 264
AclWI GGATC 3 cut(s) 335, 348, 1001
AcsI RAATTY 1 cut(s) 609
AfaI GTAC 5 cut(s) 167, 435, 623, 699, 807
AgsI TTSAA 3 cut(s) 327, 574, 800
AjnI CCWGG 2 cut(s) 757, 985
AluBI AGCT 4 cut(s) 31, 540, 641, 866
AluI AGCT 4 cut(s) 31, 540, 641, 866
Alw26I GTCTC 2 cut(s) 805, 962
AlwI GGATC 3 cut(s) 335, 348, 1001
ApeKI GCWGC 2 cut(s) 37, 227
ApoI RAATTY 1 cut(s) 609
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 754
AsuHPI GGTGA 2 cut(s) 290, 773
AvaII GGWCC 1 cut(s) 754
AvrII CCTAGG 1 cut(s) 215
BamHI GGATCC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 494
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 49, 214
BccI CCATC 2 cut(s) 898, 923
BciT130I CCWGG 3 cut(s) 759, 987, 1011
BcoDI GTCTC 2 cut(s) 805, 962
BfaI CTAG 3 cut(s) 216, 321, 710
BisI GCNGC 2 cut(s) 38, 228
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 2 cut(s) 39, 229
BmcAI AGTACT 1 cut(s) 623
Bme1390I CCNGG 3 cut(s) 759, 987, 1011
Bme18I GGWCC 1 cut(s) 754
BmgT120I GGNCC 1 cut(s) 754
BmiI GGNNCC 3 cut(s) 342, 756, 924
BmrFI CCNGG 3 cut(s) 759, 987, 1011
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 3 cut(s) 592, 703, 725
BmuI ACTGGG 1 cut(s) 425
BoxI GACNNNNGTC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 530, 556
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 4 cut(s) 215, 556, 652, 757
Bse118I RCCGGY 1 cut(s) 919
Bse1I ACTGG 5 cut(s) 133, 420, 594, 787, 849
Bse3DI GCAATG 1 cut(s) 557
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 3 cut(s) 759, 987, 1011
BseDI CCNNGG 4 cut(s) 215, 556, 652, 757
BseGI GGATG 3 cut(s) 316, 607, 648
BseJI GATNNNNATC 1 cut(s) 345
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 4 cut(s) 170, 224, 246, 957
BseNI ACTGG 5 cut(s) 133, 420, 594, 787, 849
BseRI GAGGAG 1 cut(s) 764
BseXI GCAGC 2 cut(s) 49, 214
Bsh1285I CGRYCG 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 920
BsmAI GTCTC 2 cut(s) 805, 962
BsmI GAATGC 1 cut(s) 266
Bsp1407I TGTACA 4 cut(s) 165, 433, 697, 805
Bsp143I GATC 3 cut(s) 57, 340, 1006
BspACI CCGC 2 cut(s) 135, 264
BspCNI CTCAG 4 cut(s) 169, 223, 247, 958
BspLI GGNNCC 3 cut(s) 342, 756, 924
BspPI GGATC 3 cut(s) 335, 348, 1001
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 919
BsrGI TGTACA 4 cut(s) 165, 433, 697, 805
BsrI ACTGG 5 cut(s) 133, 420, 594, 787, 849
BssAI RCCGGY 1 cut(s) 919
BssECI CCNNGG 4 cut(s) 215, 556, 652, 757
BssMI GATC 3 cut(s) 57, 340, 1006
BssT1I CCWWGG 3 cut(s) 215, 556, 652
Bst2UI CCWGG 3 cut(s) 759, 987, 1011
Bst4CI ACNGT 4 cut(s) 238, 397, 663, 837
Bst6I CTCTTC 1 cut(s) 891
BstAUI TGTACA 4 cut(s) 165, 433, 697, 805
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 5 cut(s) 156, 210, 255, 354, 966
BstF5I GGATG 3 cut(s) 316, 607, 648
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 3 cut(s) 60, 343, 1009
BstMAI GTCTC 2 cut(s) 805, 962
BstMBI GATC 3 cut(s) 57, 340, 1006
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 3 cut(s) 759, 987, 1011
BstNSI RCATGY 1 cut(s) 505
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 757, 985
BstV1I GCAGC 2 cut(s) 49, 214
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 2 cut(s) 340, 1006
BstYI RGATCY 2 cut(s) 340, 1006
BtsCI GGATG 3 cut(s) 316, 607, 648
Cac8I GCNNGC 1 cut(s) 422
CfoI GCGC 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 919
Cfr13I GGNCC 1 cut(s) 754
CseI GACGC 1 cut(s) 65
Csp6I GTAC 5 cut(s) 166, 434, 622, 698, 806
CviAII CATG 4 cut(s) 101, 386, 502, 586
CviJI RGCY 9 cut(s) 31, 50, 214, 227, 420, 540, 641, 866, 923
CviKI_1 RGCY 9 cut(s) 31, 50, 214, 227, 420, 540, 641, 866, 923
CviQI GTAC 5 cut(s) 166, 434, 622, 698, 806
DdeI CTNAG 5 cut(s) 156, 210, 255, 354, 966
DpnI GATC 3 cut(s) 59, 342, 1008
DpnII GATC 3 cut(s) 57, 340, 1006
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Eco130I CCWWGG 3 cut(s) 215, 556, 652
Eco47I GGWCC 1 cut(s) 754
EcoO109I RGGNCCY 1 cut(s) 754
EcoRII CCWGG 2 cut(s) 757, 985
EcoT14I CCWWGG 3 cut(s) 215, 556, 652
EcoT22I ATGCAT 1 cut(s) 718
ErhI CCWWGG 3 cut(s) 215, 556, 652
FaeI CATG 4 cut(s) 104, 389, 505, 589
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FatI CATG 4 cut(s) 100, 385, 501, 585
FauNDI CATATG 1 cut(s) 744
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 2 cut(s) 38, 228
FokI GGATG 3 cut(s) 323, 614, 635
Fsp4HI GCNGC 2 cut(s) 38, 228
FspBI CTAG 3 cut(s) 216, 321, 710
GlaI GCGC 1 cut(s) 384
GluI GCNGC 2 cut(s) 38, 228
HapII CCGG 1 cut(s) 920
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 385
Hin1II CATG 4 cut(s) 104, 389, 505, 589
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HincII GTYRAC 2 cut(s) 659, 723
HindII GTYRAC 2 cut(s) 659, 723
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 4 cut(s) 565, 739, 800, 990
HpaI GTTAAC 1 cut(s) 723
HpaII CCGG 1 cut(s) 920
HphI GGTGA 2 cut(s) 290, 773
Hpy166II GTNNAC 3 cut(s) 646, 659, 723
Hpy188I TCNGA 4 cut(s) 302, 619, 738, 895
Hpy188III TCNNGA 5 cut(s) 55, 400, 710, 788, 926
Hpy8I GTNNAC 3 cut(s) 646, 659, 723
HpyAV CCTTC 2 cut(s) 40, 555
HpyCH4III ACNGT 4 cut(s) 238, 397, 663, 837
HpyCH4V TGCA 7 cut(s) 443, 505, 605, 635, 716, 907, 917
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 5 cut(s) 156, 210, 255, 354, 966
Hsp92II CATG 4 cut(s) 104, 389, 505, 589
HspAI GCGC 1 cut(s) 383
KspAI GTTAAC 1 cut(s) 723
Kzo9I GATC 3 cut(s) 57, 340, 1006
LmnI GCTCC 1 cut(s) 928
Lsp1109I GCAGC 2 cut(s) 49, 214
LweI GCATC 3 cut(s) 592, 703, 725
MaeI CTAG 3 cut(s) 216, 321, 710
MaeIII GTNAC 6 cut(s) 205, 268, 290, 313, 837, 976
MalI GATC 3 cut(s) 59, 342, 1008
MboI GATC 3 cut(s) 57, 340, 1006
MboII GAAGA 3 cut(s) 499, 803, 878
MflI RGATCY 2 cut(s) 340, 1006
MluCI AATT 4 cut(s) 149, 579, 609, 795
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 8 cut(s) 15, 79, 165, 250, 301, 328, 742, 745
Mph1103I ATGCAT 1 cut(s) 718
MseI TTAA 4 cut(s) 426, 578, 722, 831
MslI CAYNNNNRTG 1 cut(s) 693
MspI CCGG 1 cut(s) 920
MspR9I CCNGG 3 cut(s) 759, 987, 1011
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 3 cut(s) 759, 987, 1011
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 744
NdeII GATC 3 cut(s) 57, 340, 1006
NlaIII CATG 4 cut(s) 104, 389, 505, 589
NlaIV GGNNCC 3 cut(s) 342, 756, 924
NmuCI GTSAC 2 cut(s) 313, 976
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 4 cut(s) 565, 739, 800, 990
PkrI GCNGC 2 cut(s) 39, 229
Ple19I CGATCG 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 754
PshAI GACNNNNGTC 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 754
Psp6I CCWGG 2 cut(s) 757, 985
PspGI CCWGG 2 cut(s) 757, 985
PspN4I GGNNCC 3 cut(s) 342, 756, 924
PspPI GGNCC 1 cut(s) 754
PspPPI RGGWCCY 1 cut(s) 754
PsuI RGATCY 2 cut(s) 340, 1006
PvuI CGATCG 1 cut(s) 60
RsaI GTAC 5 cut(s) 167, 435, 623, 699, 807
RsaNI GTAC 5 cut(s) 166, 434, 622, 698, 806
RseI CAYNNNNRTG 1 cut(s) 693
SalI GTCGAC 1 cut(s) 657
SaqAI TTAA 4 cut(s) 426, 578, 722, 831
SatI GCNGC 2 cut(s) 38, 228
Sau3AI GATC 3 cut(s) 57, 340, 1006
Sau96I GGNCC 1 cut(s) 754
ScaI AGTACT 1 cut(s) 623
ScrFI CCNGG 3 cut(s) 759, 987, 1011
SfaNI GCATC 3 cut(s) 592, 703, 725
SinI GGWCC 1 cut(s) 754
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 535, 545
SmoI CTYRAG 2 cut(s) 535, 545
Sse9I AATT 4 cut(s) 149, 579, 609, 795
SsiI CCGC 2 cut(s) 135, 264
SspI AATATT 2 cut(s) 948, 961
SspMI CTAG 3 cut(s) 216, 321, 710
StyD4I CCNGG 2 cut(s) 757, 985
StyI CCWWGG 3 cut(s) 215, 556, 652
TaaI ACNGT 4 cut(s) 238, 397, 663, 837
TaqI TCGA 2 cut(s) 375, 658
TasI AATT 4 cut(s) 149, 579, 609, 795
TatI WGTACW 5 cut(s) 165, 433, 621, 697, 805
TfiI GAWTC 4 cut(s) 565, 739, 800, 990
Tru1I TTAA 4 cut(s) 426, 578, 722, 831
Tru9I TTAA 4 cut(s) 426, 578, 722, 831
TseFI GTSAC 2 cut(s) 313, 976
TseI GCWGC 2 cut(s) 37, 227
Tsp45I GTSAC 2 cut(s) 313, 976
TspDTI ATGAA 2 cut(s) 393, 731
VpaK11BI GGWCC 1 cut(s) 754
XapI RAATTY 1 cut(s) 609
XbaI TCTAGA 1 cut(s) 709
XceI RCATGY 1 cut(s) 505
XmaJI CCTAGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 658
XspI CTAG 3 cut(s) 216, 321, 710
ZrmI AGTACT 1 cut(s) 623
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.